mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 526,792 | 0 | A | C | 22.5% | 225.3 / 62.1 | 112 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 4,295,320 | 0 | C | T | 21.8% | 247.4 / 63.1 | 125 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_pae_pgi | 526,796 | 0 | C | G | 21.4% | 288.9 / 67.4 | 112 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Marginal new junction evidence (lowest skew 10 of 602 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 225281 | NA (NA) | 26 (0.270) | 23/252 | 6.3 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_pgi | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_pae_pgi | = 4541950 | 95 (0.940) | 24 (0.260) | 21/244 | 6.6 | 20.9% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_pgi | = 4542246 | 93 (0.990) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_pgi | = 2068406 | 194 (1.920) | 29 (0.330) | 19/226 | 6.6 | 15.8% | pseudogene (14/159 nt) | yoeH | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related |
| ? | NC_000913_3_pae_pgi | = 2068411 | 143 (1.640) | pseudogene (9/159 nt) | yoeH | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_pgi | 3423218 = | 124 (1.230) | 19 (0.210) | 17/240 | 7.7 | 14.3% | intergenic (+24/+205) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_pae_pgi | 3423244 = | 114 (1.230) | intergenic (+50/+179) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913_3_pae_pgi | = 274419 | NA (NA) | 39 (0.400) | 18/252 | 7.8 | NA | coding (699/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913_3_pae_pgi | = 274423 | NA (NA) | coding (695/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913_3_pae_pgi | 1097172 = | NA (NA) | 23 (0.230) | 18/256 | 8.0 | 27.5% | intergenic (+343/+393) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_pae_pgi | 1097188 = | 62 (0.610) | intergenic (+359/+377) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_pae_pgi | 1096988 = | 89 (0.880) | 23 (0.230) | 18/256 | 8.0 | 20.9% | intergenic (+159/+577) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_pae_pgi | 1097191 = | NA (NA) | intergenic (+362/+374) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_pae_pgi | 2906594 = | 124 (1.230) | 16 (0.180) | 15/236 | 8.3 | 12.9% | intergenic (+11/+49) | ygcG/eno | TPM domain protein, putative phosphatase/enolase |
| ? | NC_000913_3_pae_pgi | 2906624 = | 105 (1.160) | intergenic (+41/+19) | ygcG/eno | TPM domain protein, putative phosphatase/enolase | |||||
| * | ? | NC_000913_3_pae_pgi | 225456 = | 10 (0.100) | 24 (0.260) | 15/244 | 8.6 | 72.0% | noncoding (76/77 nt) | ileV | tRNA‑Ile |
| ? | NC_000913_3_pae_pgi | = 3427056 | NA (NA) | intergenic (‑23/+20) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | NC_000913_3_pae_pgi | 59280 = | 115 (1.140) | 15 (0.170) | 13/228 | 8.8 | 13.8% | intergenic (+1/+407) | yabP/rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent |
| ? | NC_000913_3_pae_pgi | 59320 = | 88 (1.000) | intergenic (+41/+367) | yabP/rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent | |||||