mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 22.2% | 116.6 / 27.0 | 63 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 39 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 47 (0.960) | 6 (0.140) | 6/246 | 5.1 | 13.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 33 (0.760) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4542690 | 33 (0.680) | 9 (0.200) | 6/260 | 5.4 | 20.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 39 (0.850) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 3570872 = | 63 (1.290) | 6 (0.130) | 6/266 | 5.5 | 9.4% | coding (448/1974 nt) | glgX | glycogen debranching enzyme |
| ? | NC_000913 | 3570898 = | 55 (1.180) | coding (422/1974 nt) | glgX | glycogen debranching enzyme | |||||
| * | ? | NC_000913 | = 1207805 | 40 (0.820) | 5 (0.120) | 5/246 | 5.6 | 12.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 33 (0.760) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 961051 | 52 (1.060) | 5 (0.110) | 5/262 | 5.9 | 9.0% | intergenic (+23/‑150) | ycaL/cmk | putative peptidase‑related chaperone/cytidylate kinase |
| ? | NC_000913 | = 961058 | 52 (1.130) | intergenic (+30/‑143) | ycaL/cmk | putative peptidase‑related chaperone/cytidylate kinase | |||||
| * | ? | NC_000913 | 4542682 = | 32 (0.650) | 4 (0.090) | 4/260 | 6.4 | 10.4% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 39 (0.850) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 1237052 | 63 (1.290) | 4 (0.080) | 4/268 | 6.5 | 6.3% | coding (190/1533 nt) | ycgB | SpoVR family stationary phase protein |
| ? | NC_000913 | = 1237064 | 58 (1.230) | coding (178/1533 nt) | ycgB | SpoVR family stationary phase protein | |||||
| * | ? | NC_000913 | 66668 = | 63 (1.290) | 4 (0.090) | 4/264 | 6.5 | 6.2% | noncoding (104/248 nt) | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | 66742 = | 61 (1.310) | noncoding (178/248 nt) | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | 66650 = | 66 (1.350) | 4 (0.090) | 4/264 | 6.5 | 6.1% | noncoding (86/248 nt) | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | 66675 = | 61 (1.310) | noncoding (111/248 nt) | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | 66565 = | NA (NA) | 4 (0.090) | 4/264 | 6.5 | 6.2% | noncoding (1/248 nt) | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | 66675 = | 61 (1.310) | noncoding (111/248 nt) | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||