mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 38.7% | 51.1 / 94.5 | 94 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,287,268 | 0 | C | A | 26.9% | 126.6 / 10.4 | 80 | noncoding (61/85 nt) | tyrV | tRNA‑Tyr |
| * | NC_000913 | 2,081,057 | 0 | A | G | 20.8% | 179.2 / 45.4 | 98 | V69A (GTG→GCG) ‡ | sbmC | DNA gyrase inhibitor |
| * | NC_000913 | 2,081,058 | 0 | C | T | 20.4% | 202.6 / 41.8 | 98 | V69M (GTG→ATG) ‡ | sbmC | DNA gyrase inhibitor |
| * | NC_000913 | 1,708,662 | 0 | C | G | 20.0% | 74.3 / 11.4 | 41 | Q582E (CAA→GAA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Marginal new junction evidence (lowest skew 10 of 234 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 331646 | 141 (1.400) | 18 (0.190) | 14/276 | 7.1 | 11.6% | intergenic (+150/‑725) | betT/yahA | choline transporter of high affinity/c‑di‑GMP‑specific phosphodiesterase |
| ? | NC_000913 | = 331653 | 143 (1.510) | intergenic (+157/‑718) | betT/yahA | choline transporter of high affinity/c‑di‑GMP‑specific phosphodiesterase | |||||
| * | ? | NC_000913 | = 220064 | 145 (1.440) | 16 (0.170) | 14/280 | 7.2 | 10.3% | intergenic (‑69/+49) | rcsF/metQ | putative outer membrane protein/DL‑methionine transporter subunit |
| ? | NC_000913 | = 220068 | 141 (1.470) | intergenic (‑73/+45) | rcsF/metQ | putative outer membrane protein/DL‑methionine transporter subunit | |||||
| * | ? | NC_000913 | = 1207805 | 80 (0.790) | 11 (0.120) | 11/262 | 7.8 | 15.0% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 53 (0.590) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1465092 = | 133 (1.320) | 13 (0.140) | 11/272 | 8.1 | 9.1% | intergenic (+31/+73) | paaY/ynbG | thioesterase required for phenylacetic acid degradation; trimeric; phenylacetate regulatory and detoxification protein; hexapeptide repeat protein/uncharacterized protein |
| ? | NC_000913 | 1465125 = | 136 (1.460) | intergenic (+64/+40) | paaY/ynbG | thioesterase required for phenylacetic acid degradation; trimeric; phenylacetate regulatory and detoxification protein; hexapeptide repeat protein/uncharacterized protein | |||||
| * | ? | NC_000913 | 2822046 = | 120 (1.190) | 14 (0.140) | 11/282 | 8.3 | 10.5% | intergenic (‑35/+93) | alaS/recX | alanyl‑tRNA synthetase/regulatory protein for RecA |
| ? | NC_000913 | 2822080 = | 124 (1.280) | intergenic (‑69/+59) | alaS/recX | alanyl‑tRNA synthetase/regulatory protein for RecA | |||||
| * | ? | NC_000913 | = 3775718 | 103 (1.020) | 12 (0.120) | 10/282 | 8.7 | 10.6% | coding (147/588 nt) | mtlR | mannitol operon repressor |
| ? | NC_000913 | = 3775735 | 103 (1.070) | coding (164/588 nt) | mtlR | mannitol operon repressor | |||||
| * | ? | NC_000913 | 4363384 = | 128 (1.270) | 11 (0.120) | 9/278 | 9.1 | 9.1% | coding (1659/1698 nt) | dsbD | thiol:disulfide interchange protein and activator of DsbC |
| ? | NC_000913 | 4363422 = | 99 (1.040) | coding (1621/1698 nt) | dsbD | thiol:disulfide interchange protein and activator of DsbC | |||||
| * | ? | NC_000913 | 1893757 = | 119 (1.180) | 12 (0.130) | 9/280 | 9.1 | 9.7% | intergenic (+46/‑376) | yoaB/yoaC | putative reactive intermediate deaminase/DUF1889 family protein |
| ? | NC_000913 | 1893784 = | 111 (1.160) | intergenic (+73/‑349) | yoaB/yoaC | putative reactive intermediate deaminase/DUF1889 family protein | |||||
| * | ? | NC_000913 | = 3576736 | 75 (0.740) | 11 (0.110) | 9/284 | 9.2 | 13.1% | coding (326/1341 nt) | gntU | gluconate transporter, low affinity GNT 1 system |
| ? | NC_000913 | = 3576763 | 74 (0.760) | coding (299/1341 nt) | gntU | gluconate transporter, low affinity GNT 1 system | |||||
| * | ? | NC_000913 | = 4497952 | 128 (1.270) | 9 (0.100) | 8/276 | 9.5 | 7.0% | intergenic (+12/‑320) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |
| ? | NC_000913 | = 4497954 | 118 (1.250) | intergenic (+14/‑318) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA | |||||