mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 26.1% | 57.2 / 23.3 | 47 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_pae_tpiA | 1,544,022 | 1 | . | A | 20.0% | 62.5 / 16.2 | 25 | coding (39/1389 nt) | narU | nitrate/nitrite transporter |
| Marginal new junction evidence (lowest skew 10 of 181 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 3986604 = | 42 (1.160) | 5 (0.150) | 5/260 | 4.1 | 11.0% | noncoding (173/207 nt) | glmZ | sRNA antisense activator of glmS mRNA, Hfq‑dependent |
| ? | NC_000913_3_pae_tpiA | 3986634 = | 42 (1.260) | noncoding (203/207 nt) | glmZ | sRNA antisense activator of glmS mRNA, Hfq‑dependent | |||||
| * | ? | NC_000913_3_pae_tpiA | 1735255 = | 43 (1.190) | 6 (0.180) | 5/260 | 4.1 | 13.1% | intergenic (+5/‑123) | mepH/sodB | murein DD‑endopeptidase, space‑maker hydrolase/superoxide dismutase, Fe |
| ? | NC_000913_3_pae_tpiA | 1735283 = | 40 (1.200) | intergenic (+33/‑95) | mepH/sodB | murein DD‑endopeptidase, space‑maker hydrolase/superoxide dismutase, Fe | |||||
| * | ? | NC_000913_3_pae_tpiA | = 2530780 | 45 (1.250) | 5 (0.140) | 5/270 | 4.2 | 10.3% | coding (454/987 nt) | zipA | FtsZ stabilizer |
| ? | NC_000913_3_pae_tpiA | = 2530797 | 44 (1.270) | coding (437/987 nt) | zipA | FtsZ stabilizer | |||||
| * | ? | NC_000913_3_pae_tpiA | 2304842 = | NA (NA) | 5 (0.150) | 5/268 | 4.2 | 21.7% | noncoding (426/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_pae_tpiA | 2304923 = | 19 (0.530) | noncoding (507/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | 2304616 = | NA (NA) | 5 (0.150) | 5/268 | 4.2 | 26.0% | noncoding (200/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_pae_tpiA | 2304697 = | 15 (0.420) | noncoding (281/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | 2304591 = | NA (NA) | 5 (0.150) | 5/268 | 4.2 | 14.9% | noncoding (175/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_pae_tpiA | 2304609 = | 30 (0.830) | noncoding (193/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | = 773552 | 42 (1.160) | 5 (0.140) | 5/270 | 4.2 | 11.5% | coding (511/1140 nt) | cydB | cytochrome d terminal oxidase, subunit II |
| ? | NC_000913_3_pae_tpiA | = 773554 | 37 (1.070) | coding (513/1140 nt) | cydB | cytochrome d terminal oxidase, subunit II | |||||
| * | ? | NC_000913_3_pae_tpiA | 4322620 = | 32 (0.890) | 5 (0.140) | 5/276 | 4.3 | 12.8% | pseudogene (111/372 nt) | phnE | defective phosphonate ABC transporter permease;transport; Transport of small molecules: Anions; membrane channel protein component of Pn transporter; membrane component of ABC superfamily |
| ? | NC_000913_3_pae_tpiA | 4322653 = | 37 (1.050) | pseudogene (78/372 nt) | phnE | defective phosphonate ABC transporter permease;transport; Transport of small molecules: Anions; membrane channel protein component of Pn transporter; membrane component of ABC superfamily | |||||
| * | ? | NC_000913_3_pae_tpiA | = 2014974 | 32 (0.890) | 5 (0.140) | 5/272 | 4.3 | 11.9% | coding (95/996 nt) | fliG | flagellar motor switching and energizing component |
| ? | NC_000913_3_pae_tpiA | = 2014992 | 43 (1.230) | coding (113/996 nt) | fliG | flagellar motor switching and energizing component | |||||
| * | ? | NC_000913_3_pae_tpiA | 526259 = | NA (NA) | 5 (0.140) | 5/272 | 4.3 | 100% | coding (2999/4281 nt) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913_3_pae_tpiA | 526275 = | 0 (0.000) | coding (3015/4281 nt) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||