mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 27 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 489979 = | NA (NA) | 6 (0.200) | 6/272 | 3.1 | 19.4% | noncoding (21/98 nt) | RIP43 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP43 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_pae_tpiA | 490042 = | 25 (0.840) | noncoding (84/98 nt) | RIP43 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP43 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_pae_tpiA | 3423376 = | 31 (0.990) | 6 (0.190) | 6/280 | 3.2 | 17.0% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_pae_tpiA | = 4213078 | 28 (0.910) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913_3_pae_tpiA | 3423376 = | 31 (0.990) | 6 (0.190) | 6/280 | 3.2 | 23.7% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_pae_tpiA | = 3946822 | 8 (0.260) | intergenic (+3/‑50) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp | |||||
| * | ? | NC_000913_3_pae_tpiA | 3423376 = | 31 (0.990) | 6 (0.190) | 6/280 | 3.2 | 16.4% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_pae_tpiA | 3423665 = | NA (NA) | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913_3_pae_tpiA | = 382205 | NA (NA) | 6 (0.190) | 6/282 | 3.2 | NA | coding (532/906 nt) | insD1 | IS2 transposase TnpB |
| ? | NC_000913_3_pae_tpiA | = 382224 | NA (NA) | coding (551/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | NC_000913_3_pae_tpiA | 1207790 = | 27 (0.860) | 5 (0.180) | 4/252 | 3.6 | 18.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | 1209619 = | 20 (0.720) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | 3423672 = | NA (NA) | 4 (0.130) +ACATCAA |
4/270 | 3.9 | 4.5% | noncoding (116/120 nt) | rrfD | 5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_pae_tpiA | = 4040683 | 89 (2.850) | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3231408 | 28 (0.900) | 4 (0.130) | 4/274 | 3.9 | 13.1% | noncoding (157/283 nt) | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913_3_pae_tpiA | = 3231427 | 26 (0.860) | noncoding (176/283 nt) | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | = 2530204 | 34 (1.090) | 4 (0.140) | 4/268 | 3.9 | 10.9% | intergenic (‑28/+43) | ligA/zipA | DNA ligase, NAD(+)‑dependent/FtsZ stabilizer |
| ? | NC_000913_3_pae_tpiA | = 2530209 | 33 (1.120) | intergenic (‑33/+38) | ligA/zipA | DNA ligase, NAD(+)‑dependent/FtsZ stabilizer | |||||
| * | ? | NC_000913_3_pae_tpiA | = 2235628 | 30 (0.960) | 4 (0.130) | 4/272 | 3.9 | 11.3% | coding (364/1236 nt) | preA | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C |
| ? | NC_000913_3_pae_tpiA | = 2235642 | 34 (1.140) | coding (378/1236 nt) | preA | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C | |||||