mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| JC | 1,110 | +66 bp | intergenic (+1035/+2045) | TMARI_RS09660 → / ← TMARI_RS00005 | hypothetical protein/IGHMBP2 family helicase |
| MC JC | 32,473 | Δ1,603 bp | TMARI_RS00145 | TMARI_RS00145 | |
| RA | 448,951 | T→C | R536R (AGA→AGG) | TMARI_RS02175 ← | methyl‑accepting chemotaxis protein 1 |
| RA | 453,837 | A→G | intergenic (‑207/‑40) | TMARI_RS02190 ← / → TMARI_RS02195 | carbohydrate ABC transporter substrate‑binding protein/pectate trisaccharide‑lyase |
| RA | 531,887 | Δ1 bp | intergenic (‑320/‑355) | TMARI_RS02580 ← / → TMARI_RS02585 | ABC transporter permease/molecular chaperone GroES |
| RA | 619,041 | C→T | W173* (TGG→TGA) | TMARI_RS03000 ← | gfo/Idh/MocA family oxidoreductase |
| RA | 620,909 | C→T | G396R (GGA→AGA) | TMARI_RS03010 ← | manganese‑dependent inorganic pyrophosphatase |
| RA | 1,577,174 | C→T | E979K (GAA→AAA) | TMARI_RS08125 ← | peptidase C11 |
| JC | 1,814,273 | (CCCT)2→1 | intergenic (‑48/+60) | TMARI_RS09830 ← / ← TMARI_RS09405 | DUF4896 domain‑containing protein/maltose/maltodextrin ABC transporter substrate‑binding protein MalE |
| MC JC | 1,815,540 | Δ28 bp | intergenic (‑23/‑201) | TMARI_RS09405 ← / → TMARI_RS09410 | maltose/maltodextrin ABC transporter substrate‑binding protein MalE/alpha‑amylase |
| RA | 1,831,868 | T→C | intergenic (‑123/+144) | TMARI_RS09460 ← / ← TMARI_RS09465 | sugar ABC transporter substrate‑binding protein/carbohydrate ABC transporter permease |
| RA | 1,831,886 | C→A | intergenic (‑141/+126) | TMARI_RS09460 ← / ← TMARI_RS09465 | sugar ABC transporter substrate‑binding protein/carbohydrate ABC transporter permease |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_021214 | 1811362 = | 16 (0.070) | 261 (1.160) | 121/454 | 0.3 | 94.2% | coding (1164/2502 nt) | TMARI_RS09395 | maltose ABC transporter permease |
| ? | NC_021214 | = 1811372 | NA (NA) | coding (1154/2502 nt) | TMARI_RS09395 | maltose ABC transporter permease | |||||