mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 81 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_021214 | 1,239,628 | 0 | T | G | 43.9% | 117.5 / 42.9 | 99 | C97G (TGT→GGT) | TMARI_RS06210 | oxidoreductase |
| * | NC_021214 | 769,664 | 0 | C | T | 37.6% | 99.6 / 83.5 | 117 | G295R (GGA→AGA) ‡ | TMARI_RS03820 | S41 family peptidase |
| * | NC_021214 | 769,656 | 0 | G | C | 35.1% | 136.9 / 91.2 | 117 | A297A (GCC→GCG) ‡ | TMARI_RS03820 | S41 family peptidase |
| * | NC_021214 | 769,661 | 0 | A | G | 34.8% | 101.3 / 84.2 | 115 | S296P (TCG→CCG) | TMARI_RS03820 | S41 family peptidase |
| * | NC_021214 | 358,511 | 0 | G | A | 33.0% | 186.1 / 56.3 | 115 | intergenic (‑93/‑92) | TMARI_RS01730/TMARI_RS01735 | hypothetical protein/DUF2089 domain‑containing protein |
| * | NC_021214 | 270,788 | 0 | C | T | 33.0% | 151.1 / 35.5 | 91 | S150F (TCC→TTC) | TMARI_RS01340 | inorganic phosphate transporter |
| * | NC_021214 | 769,648 | 0 | G | T | 31.9% | 138.5 / 81.3 | 120 | S300Y (TCC→TAC) | TMARI_RS03820 | S41 family peptidase |
| * | NC_021214 | 769,657 | 0 | G | T | 31.6% | 124.9 / 59.3 | 117 | A297D (GCC→GAC) ‡ | TMARI_RS03820 | S41 family peptidase |
| * | NC_021214 | 769,663 | 0 | C | T | 31.3% | 131.5 / 57.8 | 117 | G295E (GGA→GAA) ‡ | TMARI_RS03820 | S41 family peptidase |
| * | NC_021214 | 769,669 | 0 | T | A | 31.2% | 166.9 / 63.1 | 114 | N293I (AAC→ATC) | TMARI_RS03820 | S41 family peptidase |
| * | NC_021214 | 769,658 | 0 | C | T | 30.7% | 111.5 / 64.3 | 116 | A297T (GCC→ACC) ‡ | TMARI_RS03820 | S41 family peptidase |
| * | NC_021214 | 602,920 | 0 | T | G | 30.5% | 218.3 / 11.5 | 105 | V382G (GTT→GGT) L17V (TTG→GTG) | TMARI_RS02930 TMARI_RS02935 | DegT/DnrJ/EryC1/StrS aminotransferase family protein apolipoprotein N‑acyltransferase |
| * | NC_021214 | 769,662 | 0 | T | C | 30.4% | 160.2 / 58.7 | 116 | G295G (GGA→GGG) ‡ | TMARI_RS03820 | S41 family peptidase |
| * | NC_021214 | 769,665 | 0 | T | G | 29.3% | 159.8 / 53.3 | 117 | E294D (GAA→GAC) | TMARI_RS03820 | S41 family peptidase |
| * | NC_021214 | 769,655 | 0 | A | T | 29.2% | 163.2 / 66.7 | 117 | S298T (TCG→ACG) | TMARI_RS03820 | S41 family peptidase |
| * | NC_021214 | 769,670 | 0 | T | A | 28.6% | 195.5 / 49.0 | 114 | N293Y (AAC→TAC) | TMARI_RS03820 | S41 family peptidase |
| * | NC_021214 | 1,869,424 | 0 | C | A | 28.6% | 84.4 / 20.1 | 124 | intergenic (+36/‑75) | TMARI_RS09635/TMARI_RS09660 | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase/hypothetical protein |
| * | NC_021214 | 358,524 | 0 | T | A | 28.3% | 237.1 / 28.6 | 107 | intergenic (‑106/‑79) | TMARI_RS01730/TMARI_RS01735 | hypothetical protein/DUF2089 domain‑containing protein |
| * | NC_021214 | 1,104,172 | 0 | T | A | 27.8% | 315.1 / 58.9 | 169 | I120K (ATA→AAA) | TMARI_RS05545 | TrkA family potassium uptake protein |
| * | NC_021214 | 769,660 | 0 | G | T | 27.6% | 170.4 / 50.5 | 116 | S296* (TCG→TAG) | TMARI_RS03820 | S41 family peptidase |
| Marginal new junction evidence (lowest skew 10 of 26 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_021214 | 157995 = | 182 (0.810) | 10 (0.050) | 7/434 | 13.5 | 5.5% | coding (478/648 nt) | TMARI_RS00740 | lactate utilization protein |
| ? | NC_021214 | 158204 = | 171 (0.800) | coding (1857/1872 nt) | TMARI_RS00745 | DUF4914 domain‑containing protein | |||||
| * | ? | NC_021214 | = 453135 | 251 (1.120) | 8 (0.040) | 7/438 | 13.6 | 3.3% | coding (496/1272 nt) | TMARI_RS02190 | carbohydrate ABC transporter substrate‑binding protein |
| ? | NC_021214 | = 453205 | 230 (1.060) | coding (426/1272 nt) | TMARI_RS02190 | carbohydrate ABC transporter substrate‑binding protein | |||||
| * | ? | NC_021214 | = 1327959 | 225 (1.000) | 6 (0.030) | 6/434 | 14.1 | 2.9% | coding (417/762 nt) | TMARI_RS06635 | ABC transporter permease |
| ? | NC_021214 | = 1328123 | 187 (0.870) | coding (581/762 nt) | TMARI_RS06635 | ABC transporter permease | |||||
| * | ? | NC_021214 | = 1724963 | 334 (1.490) | 6 (0.030) | 5/440 | 14.8 | 2.1% | coding (45/870 nt) | TMARI_RS08945 | ABC transporter permease |
| ? | NC_021214 | = 1725091 | 248 (1.140) | coding (173/870 nt) | TMARI_RS08945 | ABC transporter permease | |||||
| * | ? | NC_021214 | 1732299 = | 215 (0.960) | 4 (0.020) | 4/434 | 15.3 | 1.7% | coding (201/1128 nt) | TMARI_RS08985 | butyrate kinase |
| ? | NC_021214 | 1733235 = | 247 (1.150) | coding (41/657 nt) | TMARI_RS08990 | hypothetical protein | |||||
| * | ? | NC_021214 | = 2975 | 274 (1.220) | 3 (0.020) | 3/394 | 15.3 | 1.2% | noncoding (2564/2694 nt) | CRISPR | repeat region |
| ? | NC_021214 | = 1428166 | 244 (1.250) | intergenic (+114/+78) | TMARI_RS07195/TMARI_RS07200 | ATPase AAA/hypothetical protein | |||||
| * | ? | NC_021214 | 1674032 = | 286 (1.270) | 4 (0.020) | 4/438 | 15.4 | 1.5% | coding (737/1074 nt) | TMARI_RS08680 | tetratricopeptide repeat protein |
| ? | NC_021214 | 1674159 = | 247 (1.140) | coding (864/1074 nt) | TMARI_RS08680 | tetratricopeptide repeat protein | |||||
| * | ? | NC_021214 | 772347 = | 210 (0.940) | 6 (0.030) | 4/436 | 15.4 | 2.8% | coding (288/876 nt) | TMARI_RS03835 | DUF4941 domain‑containing protein |
| ? | NC_021214 | 772524 = | 211 (0.980) | coding (111/876 nt) | TMARI_RS03835 | DUF4941 domain‑containing protein | |||||
| * | ? | NC_021214 | 738170 = | 209 (0.930) | 7 (0.030) | 4/436 | 15.4 | 3.2% | coding (1870/2592 nt) | TMARI_RS03650 | tRNA nucleotidyltransferase |
| ? | NC_021214 | 738304 = | 218 (1.010) | coding (2004/2592 nt) | TMARI_RS03650 | tRNA nucleotidyltransferase | |||||
| * | ? | NC_021214 | = 158156 | 176 (0.780) | 4 (0.020) | 4/438 | 15.4 | 2.1% | coding (639/648 nt) | TMARI_RS00740 | lactate utilization protein |
| ? | NC_021214 | = 158314 | 198 (0.910) | coding (1747/1872 nt) | TMARI_RS00745 | DUF4914 domain‑containing protein | |||||