Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A20 F4 I5 R1
|
61 |
40.1 |
2005705 |
98.2% |
1969602 |
131.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AE015451_phaM1 |
5,701,209 |
C→A |
intergenic (+1955/‑2050) |
PP_5002 CDS (conserved protein of unknown function) → / → PP_5009 CDS (conserved protein of unknown function) |
–/– |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AE015451_phaM1 | 5,701,209 | 0 | C | A | 100.0%
| 258.3
/ NA
| 65 | intergenic (+1955/‑2050) | PP_5002 CDS (conserved protein of unknown function)/PP_5009 CDS (conserved protein of unknown function) | –/– |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (17/48); total (17/48) |
CCGGCGTCGCCGTGCTCTCGGCCTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGCGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTATGCCCTCAGATATCGAGATCGCCCGCGCGGCGACCCTGAAGC > AE015451_phaM1/5701070‑5701335
|
ccGGCGTCGCCGTGCTCTCGGCCTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGgagcg > 5:110937/1‑143 (MQ=255)
gCGTCGCCGTGCTCTCGGCCTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTc > 5:112769/1‑143 (MQ=255)
tCGCCGTGCTCTCGGCCTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACg < 2:469529/144‑1 (MQ=255)
cGTGCTCTCGGCCTATGCCGGTCTGCGCTCTGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCg < 2:151528/144‑1 (MQ=255)
cGTGCTCTCGGCCTATGCCGGTCTGCGCTCGTCTGCCCTCAACTTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCg < 2:221098/144‑1 (MQ=255)
cGTGCTCTCGGCCTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCg < 2:270040/144‑1 (MQ=255)
cGTGCTCTCGGCCTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCg < 2:270041/144‑1 (MQ=255)
cGTGCTCTCGGCCTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCg < 2:443060/144‑1 (MQ=255)
cGTGCTCTCGGCCTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCg < 2:270042/144‑1 (MQ=255)
cGTGCTCTCGGCCTATGCCGGTCTGCGCGCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCg < 2:443061/144‑1 (MQ=255)
cGTGCGCTCGGCCTATGCCGGTCTGCGCTCTTCGGCCCTCAACTTCTACGTCAATGCCAAGGGCCTCGACGACCGTGCCGTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCg < 2:151530/144‑1 (MQ=255)
tGCTCTCGGCCTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGCCCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGa > 1:241182/1‑144 (MQ=255)
tGCTCTCGGCCTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGa > 1:241183/1‑144 (MQ=255)
ggCCTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACg > 5:44810/1‑143 (MQ=255)
ggCCTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACg > 5:10395/1‑143 (MQ=255)
gCCTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACgag > 2:638463/1‑144 (MQ=255)
cTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGAc < 1:344579/144‑1 (MQ=255)
cGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGaa < 2:390855/144‑1 (MQ=255)
cGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGaa < 2:390856/144‑1 (MQ=255)
gcgcTCGGCGGCCCTCAACTTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCa < 6:112769/143‑1 (MQ=255)
cgcTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCaa < 5:17922/143‑1 (MQ=255)
tCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGt > 6:78990/1‑143 (MQ=255)
tCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGt > 6:64723/1‑143 (MQ=255)
ggcggcCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGa < 6:71650/111‑1 (MQ=255)
ggcggcCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGa > 5:71650/1‑111 (MQ=255)
ggcggcCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTATGAGACGGTGAAGTCCAAGGTaaa < 1:555724/144‑1 (MQ=255)
ggcggcCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTaaa < 1:97231/144‑1 (MQ=255)
gcCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGa < 2:80441/144‑1 (MQ=255)
gcCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGa < 2:80438/144‑1 (MQ=255)
cTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCt < 1:16859/144‑1 (MQ=255)
cTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCt < 1:16860/144‑1 (MQ=255)
cTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCt < 1:16861/144‑1 (MQ=255)
cGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCGTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGa < 2:183357/144‑1 (MQ=255)
gTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGAt > 1:29924/1‑144 (MQ=255)
tCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGAtt < 2:592805/144‑1 (MQ=255)
tCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCg < 3:137996/94‑1 (MQ=255)
cAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAAtt > 6:75206/1‑143 (MQ=255)
aaGGTCCTCGACGACCGCGCCTTCTCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCa < 1:570272/144‑1 (MQ=255)
aaGGGCCTTGACGACCGCGCCTTCGCCGAGGAGCTGCTAAAGGAGCTGGAAGGCCCGCCGGCCGAGGCGGAAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGGAAACTGACCTAGGGATTTTAATTCATTAGCa < 1:570270/144‑1 (MQ=255)
gggCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAgg < 2:257339/144‑1 (MQ=255)
gggCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAgg < 2:257341/144‑1 (MQ=255)
ggCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATGAGCAgg < 5:75206/143‑1 (MQ=255)
cTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACgg < 3:175089/94‑1 (MQ=255)
cTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACgg < 3:47399/94‑1 (MQ=255)
cTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTc < 1:452913/144‑1 (MQ=255)
cTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTc < 1:638463/144‑1 (MQ=255)
cTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTc < 2:287940/144‑1 (MQ=255)
cTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTc < 2:23957/144‑1 (MQ=255)
cTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTc < 2:74334/144‑1 (MQ=255)
tCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGt < 4:33882/94‑1 (MQ=255)
tCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGt < 4:11/94‑1 (MQ=255)
cgacgaCCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTg > 4:186897/1‑94 (MQ=255)
acgacCGCGCCTTCNCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTg < 1:600184/144‑1 (MQ=255)
acCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTAt > 1:168870/1‑144 (MQ=255)
acCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTAt > 1:168871/1‑144 (MQ=255)
ccGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAATGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGGGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCATGAGTCTTTGTAtt < 2:608413/144‑2 (MQ=255)
gcgcCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAGACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTATGc > 5:64404/1‑143 (MQ=255)
gcCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTATGccc < 6:110937/143‑1 (MQ=255)
gcCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTATGCCCt < 2:241182/144‑1 (MQ=255)
gcCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTATGCCCt < 2:241183/144‑1 (MQ=255)
ccGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTATGCCCTCAGatat < 1:399546/144‑1 (MQ=255)
ggCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTATGCCCTCAGATATCGAGATCGc > 1:236450/1‑144 (MQ=255)
gAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTATGCCCTCAGATATCGAGATCGCCcgcgcg < 6:10395/143‑1 (MQ=255)
tGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACTAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTATGCCCTCAGATATCGAGATCGCCCGCGCGGCGAc < 2:562327/144‑1 (MQ=255)
ggCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTATGCCCTCAGATATCGAGATCGCCCGCGCGGCGACCCTGa < 1:281772/144‑1 (MQ=255)
tgctgGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTATGCCCTCAGATATCGAGATCGCCCGCGCGGCGACCCTGAAGc > 5:107290/1‑143 (MQ=255)
|
CCGGCGTCGCCGTGCTCTCGGCCTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGCGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTATGCCCTCAGATATCGAGATCGCCCGCGCGGCGACCCTGAAGC > AE015451_phaM1/5701070‑5701335
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTCGGATGCCGGCGTCGCCGTGCTCTCGGCCTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGCGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTATGCCCTCAGATATCGAGATCGCCCGCGCGGCGACCCTGAAGCCGATCGCCCAGGTCGCCGAAA > AE015451_phaM1/5701062‑5701356
|
CTCGGATGCCGGCGTCGCCGTGCTCTCGGCCTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCG > LH00444:90:22JGJLLT3:8:2251:16006:4765/1‑151 (MQ=60)
GGATGCCGGCGTCGCCGTGCTCTCGGCCTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTC > LH00444:90:22JGJLLT3:8:2254:50707:28654/1‑151 (MQ=60)
GTCGCCGTGCTCTCGGCCTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGCCCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGA > LH00444:58:22357VLT4:2:1418:24735:18496/1‑151 (MQ=60)
GTCGCCGTGCTCTCGGCCTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGA > LH00444:58:22357VLT4:2:1418:24751:18496/1‑151 (MQ=60)
GTGCTCTCGGCCTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACG > LH00444:90:22JGJLLT3:8:1228:52085:5983/1‑151 (MQ=60)
GTGCTCTCGGCCTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACG > LH00444:90:22JGJLLT3:8:1119:23496:20403/1‑151 (MQ=60)
CTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAG < LH00444:58:22357VLT4:2:2146:32123:24981/151‑1 (MQ=60)
CTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTAgatcggaagagcacacgtctgaa > LH00444:90:22JGJLLT3:8:2131:16755:20451/1‑128 (MQ=60)
CGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACT < LH00444:90:22JGJLLT3:8:1132:2738:3532/151‑1 (MQ=60)
TGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCT < LH00444:58:22357VLT4:2:1229:42764:28777/151‑1 (MQ=60)
GGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTATGAGACGGTGAAGTCCAAGGTAAACTGACCT < LH00444:58:22357VLT4:2:2394:5273:12626/151‑1 (MQ=60)
CCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGAT > LH00444:58:22357VLT4:2:1141:15388:13243/1‑151 (MQ=60)
CTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATT < LH00444:58:22357VLT4:2:1124:36986:9054/151‑1 (MQ=60)
CTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATT < LH00444:58:22357VLT4:2:1124:36978:9068/151‑1 (MQ=60)
CTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATT < LH00444:58:22357VLT4:2:1124:36986:9082/151‑1 (MQ=60)
ACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATT < LH00444:58:22357VLT4:2:1188:34874:13691/151‑1 (MQ=60)
ACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATT < LH00444:58:22357VLT4:2:1188:34874:13663/151‑1 (MQ=60)
ACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATT < LH00444:58:22357VLT4:2:2129:46025:1252/151‑1 (MQ=60)
ACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATT < LH00444:58:22357VLT4:2:2129:46017:1238/151‑1 (MQ=60)
TCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTAC < LH00444:62:22GH52LT3:8:2133:9617:11511/101‑1 (MQ=60)
AAGGTCCTCGACGACCGCGCCTTCTCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCT < LH00444:58:22357VLT4:2:2415:2505:19294/151‑1 (MQ=60)
AAGGGCCTTGACGACCGCGCCTTCGCCGAGGAGCTGCTAAAGGAGCTGGAAGGCCCGCCGGCCGAGGCGGAAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGGAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCT < LH00444:58:22357VLT4:2:2415:2497:19280/151‑1 (MQ=60)
GGCCTCGACGACCGCGCCTTCGCCGGGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATGAGCAGGAGTCTTTG < LH00444:90:22JGJLLT3:8:2139:49089:25306/151‑1 (MQ=60)
CTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTAT < LH00444:58:22357VLT4:2:2276:26992:3437/151‑1 (MQ=60)
CTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTAT > LH00444:58:22357VLT4:2:1324:33628:10553/1‑151 (MQ=60)
CTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTAT < LH00444:58:22357VLT4:2:2491:28724:11170/151‑1 (MQ=60)
CTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTAT > LH00444:58:22357VLT4:2:1324:33620:10567/1‑151 (MQ=60)
CTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTC < LH00444:62:22GH52LT3:8:1177:41036:22149/101‑1 (MQ=60)
CTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTC < LH00444:62:22GH52LT3:8:2190:22359:26219/101‑1 (MQ=60)
agaaGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAGACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTATGC > LH00444:90:22JGJLLT3:8:2116:24698:1208/5‑151 (MQ=60)
ACGACCGCGCCTTCNCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTATGCCC < LH00444:58:22357VLT4:2:2449:26531:3311/151‑1 (MQ=60)
CCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTATGCCCTCAGATATCGAGATC < LH00444:58:22357VLT4:2:2213:14328:23482/151‑1 (MQ=60)
GAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTATGCCCTCAGATATCGAGATCGC > LH00444:58:22357VLT4:2:1412:26450:15610/1‑151 (MQ=60)
GGAAGGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTATGCCCTCAGATATCGAGATCGCCCGCGCGGCGACCCTGAAGC > LH00444:90:22JGJLLT3:8:2243:34018:21204/1‑151 (MQ=60)
GGCCTGCTGGCCGAGGCGGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTATGCCCTCAGATATCGAGATCGCCCGCGCGGCGACCCTGAAGCCGAT < LH00444:58:22357VLT4:2:1470:32705:6351/151‑1 (MQ=60)
GGGAGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTATGCCCTCAGATATCGAGATCGCCCGCGCGGCGACCCTGAAGCCGATCGCCCAGGTCGCCGAAA > LH00444:90:22JGJLLT3:8:2208:21619:14971/1‑151 (MQ=60)
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CTCGGATGCCGGCGTCGCCGTGCTCTCGGCCTATGCCGGTCTGCGCTCGGCGGCCCTCAACGTCTACGTCAACGCCAAGGGCCTCGACGACCGCGCCTTCGCCGAGGAGCGGCTGAAGGAGCTGGAAGGCCTGCTGGCCGAGGCGGGCGCGCTCAACGAGCGGATCTACGAGACGGTGAAGTCCAAGGTAAACTGACCTAGGGATTTTAATTCATTAGCAGGAGTCTTTGTATGCCCTCAGATATCGAGATCGCCCGCGCGGCGACCCTGAAGCCGATCGCCCAGGTCGCCGAAA > AE015451_phaM1/5701062‑5701356
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
