Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F13 I0 R1 203 85.6 3649704 98.8% 3605907 146.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947_CJ‑RC 3,323,603 T→G 31.8% D97A (GAC→GCC)  PP_2923 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947_CJ‑RC3,323,6030TG31.8% 48.0 / 14.9 56D97A (GAC→GCC) PP_2923hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (18/18);  new base G (5/11);  total (23/33)
Fisher's exact test for biased strand distribution p-value = 2.42e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CAGATCCAGCTGCAAGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGTCGCCATGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGGGCCCGGCCCGTCAGGCGGCGCTGCCGG  >  NC_002947_CJ‑RC/3323455‑3323748
                                                                                                                                                     |                                                                                                                                                   
caGATCCAGCTGCAAGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGt                                                                                                                                                     >  6:443528/1‑149 (MQ=255)
 aGATCCAGCTGCAAGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGTc                                                                                                                                                    <  7:329921/149‑1 (MQ=255)
    tCCAGCTGCAAGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGTCGcc                                                                                                                                                 <  5:89484/149‑1 (MQ=255)
       aGCTGCAAGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAACTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGTAGCCaag                                                                                                                                              >  8:84241/1‑147 (MQ=255)
        gCTGCAAGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTTCAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGTCGCCATgg                                                                                                                                             <  5:413728/149‑1 (MQ=255)
        gCTGCAAGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGTCGcccatg                                                                                                                                             >  6:35753/1‑145 (MQ=255)
        gCTGCAAGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGTAGCCATgg                                                                                                                                             >  8:281543/1‑149 (MQ=255)
           gCAAGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCCGTCGCCATGGG‑Cg                                                                                                                                         >  8:333291/1‑149 (MQ=255)
               gTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGTCGCCATGGG‑CGAcgc                                                                                                                                     <  6:164720/149‑1 (MQ=255)
               gTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGGAGGCATggggggccc                                                                                                                                      >  3:290950/1‑143 (MQ=255)
                   tCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGGGGTCGCCAAGGG‑CGACGCGccc                                                                                                                                 >  2:319143/1‑148 (MQ=255)
                   tCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGTCGCCAAGGg‑cgccgcgccc                                                                                                                                 >  6:98992/1‑148 (MQ=255)
                       ccAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGTCGCCATGGG‑CGACGCGCCACAGc                                                                                                                             >  2:309714/1‑149 (MQ=255)
                             ccTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGGCGCCATGGG‑CGACGCGCCACAGCACTTc                                                                                                                        <  2:62160/148‑1 (MQ=255)
                               tctGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGTAGCCAAGGG‑CGACCCGCCACAGCACTTCaa                                                                                                                      >  2:278160/1‑147 (MQ=255)
                                   gCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGTCGCCATGGG‑CGACGCGCCACAGCACTTCATAca                                                                                                                   <  4:327302/147‑1 (MQ=255)
                                       cGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGGCGCCCTGGG‑GGCCGCGCCACACCCCGTGATACACCAGGt                                                                                                             >  7:368915/1‑149 (MQ=255)
                                                  gTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGGCGCCAAGGG‑CGGCCCCCCCCACCCCATCATAAAGCAGGGTACCGCgctgc                                                                                                  >  5:315472/1‑149 (MQ=255)
                                                      aaaCGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGTCGCCCTGGG‑CGCCGCGCCCCCCCACGTGAAACAGCAGGGTGCCGCGCGGC‑TGGc                                                                                             >  4:76783/1‑149 (MQ=255)
                                                       aaCGCGTGCATGTTATGCGCCTCGGGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GAATTGCCGGGGGGTCGCAATGGG‑CTACGCGCCACAGCACTTCATACAACAGGTTCCAGCGCTGC‑TCGcc                                                                                            <  2:442445/149‑1 (MQ=255)
                                                           cgTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCT‑GCATTGCCGTGCGGTCGCCTTGGG‑GGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGATGC‑TCGCCACgg                                                                                        <  6:442938/149‑1 (MQ=255)
                                                           cgTGAAAGTGATGCGCCTCGCGGGTTACGTGCTTGATGCGCGGTTGCAGCTCACTGCCCAGCCGGTCACGGGCCA‑GCATTGCCGTGCGGGCGCCATGGG‑CTACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACgg                                                                                        <  1:278160/149‑1 (MQ=255)
                                                                  gTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGGCGCCCAGGG‑CGGCGCGCCCCACCCCGTGATAAAGCAGGGTCCCGCGCGGC‑GCGCCCCGGGAGCgag                                                                                 >  8:43653/1‑149 (MQ=255)
                                                                      tGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGGGCGGGCGCCATGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAgg                                                                              <  7:281543/148‑1 (MQ=255)
                                                                           cTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGTCGCCAAGGG‑CGCCCCGCCCCCCCCCATAAAAAAGCACGTTACACCGCAGC‑TCGCCCCCGTAGCGAGAGGccagg                                                                         >  2:380561/1‑145 (MQ=255)
                                                                                gggTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGTCGCCATGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAAc                                                                   <  7:133194/149‑1 (MQ=255)
                                                                                gggTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGGCACCGGCCA‑GCATTGCCGTGCGGTCGCCATGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAAc                                                                   <  1:65779/149‑1 (MQ=255)
                                                                                  gTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGTCGCCAAGGG‑CGCCCCGCCACACCACATAATAAACCAGGTTGCACCGCGTC‑TAGCCCCCGGAGCGCGAGGGCGGCGCCAAcag                                                                 >  2:116670/1‑147 (MQ=255)
                                                                                      ccTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGTCGCCATGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCt                                                              <  5:443528/148‑1 (MQ=255)
                                                                                       cTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGGGGCCAAGGG‑GGCCCCGCCCCAACACAAAATAAAACACGTTAAAACGCTGCAGCCCCCCGGT‑GCGAGAGGCCAGCACCAACAGGCTc                                                             >  4:347682/1‑148 (MQ=255)
                                                                                        tGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGTCGCCATGGG‑CGCCCCGCCACAGCCCGTCATAAAGCAGGTTGCAGCGCTGC‑TCGCCCCGGGTGCGAGAGGCCGGCTGCAACTGGcggag                                                           >  2:40711/1‑145 (MQ=255)
                                                                                          cTTTATGCGCCGTTCCACCTCACCGCCCCGCGGGAC‑CCGGCCACGCATTGCCGGGGGGCCCCCTGGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTcagc                                                          <  3:423023/148‑1 (MQ=255)
                                                                                             tttGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCTTTGCGTTGGGGTCGCCTTGGG‑CTACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGt                                                       <  2:269409/146‑1 (MQ=255)
                                                                                                    cGTTGCAGCTCACTCCCCCGCCGGTCACCGCCCA‑GCATTGCCGTGCGGTCGCCATGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCgg                                               <  7:333291/149‑1 (MQ=255)
                                                                                                    cGTGGCAGCTCACTGCCCCGCCGGTCACCGGCCA‑GCATTGCGGTGCGGGCGCCAGGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCgg                                               <  2:193592/149‑1 (MQ=255)
                                                                                                         cAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGTCGCCATGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACtt                                          <  2:413026/149‑1 (MQ=255)
                                                                                                           gcacACTCCCCAGCGGGCCACCGGCCA‑GAATGGCCGGGCGG‑CCCCATGGGCCGCCGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTg                                        <  1:319143/146‑1 (MQ=255)
                                                                                                           gCTCACTCCCCCCCCGGCCACCGCCCA‑GCTTTGCCGGGCGTCCCCCATGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTg                                        <  5:35753/149‑1 (MQ=255)
                                                                                                               aCTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGTCGCCATGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGccc                                    <  1:309714/149‑1 (MQ=255)
                                                                                                                   cccAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGTGGCCAAGGG‑CGCCGCGCCCCACCACGTAAAAAAACAGGGTGCAGCGCAGC‑TAGCCCCCGTAGCGAGAGGGCGGGGCCAACATGCTCAGCAGTGCGGCCGGGACGTTTGGCCGGa                                 >  8:344749/1‑148 (MQ=255)
                                                                                                                   cccAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGGCGCCATGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGaa                                <  5:382463/149‑1 (MQ=255)
                                                                                                                          ggTCCCCGGCCA‑GCTTTGCCGTGCGGTCGCCTTGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGggccc                         <  4:109966/149‑1 (MQ=255)
                                                                                                                             ccccGGCCA‑GCTTGGCGGGGGGGGCGCCCGGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGggtccggc                      <  4:261002/147‑1 (MQ=255)
                                                                                                                             cACCGGCCA‑GCATTGCCGGGCGGGCGCCAGGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGggcccggc                      <  1:380561/149‑1 (MQ=255)
                                                                                                                              ccgggCCA‑GCATGGCCGTGCGGTCGCCAGGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGggcccggcc                     <  1:359853/146‑1 (MQ=255)
                                                                                                                                cGGCCA‑GCATTGCCGTGCGGTGGCCATGGG‑GGAAGCGCCCCAACAAATCAAAAAACACGTTACAACGCTGC‑ACGCCAACGGATCCAGAGGCCAGCTACAACAGGCTAAGAAGTGGCGCCGGGTCATTTTCACCGAAAAGgcccggcccg                   >  8:216438/1‑149 (MQ=255)
                                                                                                                                  gCCA‑GCATTGCCGTGGGGGCGCCTTGGG‑GTACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGGGCCCGGCCCGTc                 <  4:244969/149‑1 (MQ=255)
                                                                                                                                    ccacatttGCCGGGGGGGCGCCTGGGG‑AGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGGGCCCGGCCCGTCa                <  3:412608/143‑1 (MQ=255)
                                                                                                                                    caagatttGCCGTGGGGGCCCCAGGGG‑CTACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGGGCCCGGCCCGTCa                <  3:347682/143‑1 (MQ=255)
                                                                                                                                           tGCCGTGCGGTCGCCATGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGGGCCCGGCCCGTCAGgcggcg         >  4:364131/1‑149 (MQ=255)
                                                                                                                                            gCCGTGCGGTCGCCATGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGGGCCCGGCCCGTCAGgcggcg         <  7:100917/148‑1 (MQ=255)
                                                                                                                                            gCCGTGCGGCCGCCATGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGGGCCCGGCCCGTCAGgcggcg         <  7:344749/148‑1 (MQ=255)
                                                                                                                                              cGTGCGGTCGCCATGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGGGCCCGGCCCGTCAGGCGGCGCTg      >  8:141721/1‑149 (MQ=255)
                                                                                                                                               gTGCGGTCGCCATGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGGGCCCGGCCCGTCAGGCGGCGCTGc     >  5:73653/1‑149 (MQ=255)
                                                                                                                                                ggCGGGCGCCATGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGGGCCCGGCCCGTCAGGCGGCGCTGcc    <  1:40711/148‑1 (MQ=255)
                                                                                                                                                 gCGGTCGCCATGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGGGCCCGGCCCGTCAGGCGGCGCTGCCg   <  2:386734/149‑1 (MQ=255)
                                                                                                                                                   ggTCGCCATGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGGGCCCGGCCCGTCAGGCGGCGCTGCCgg  >  1:28107/1‑148 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
CAGATCCAGCTGCAAGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCA‑GCATTGCCGTGCGGTCGCCATGGG‑CGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGC‑TCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGGGCCCGGCCCGTCAGGCGGCGCTGCCGG  >  NC_002947_CJ‑RC/3323455‑3323748

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A