Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F13 I0 R1 140 52.5 2164708 98.8% 2138731 146.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947_CJ‑RC 3,323,603 T→G 22.3% D97A (GAC→GCC)  PP_2923 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947_CJ‑RC3,323,6030TG22.3% 72.1 / 2.6 55D97A (GAC→GCC) PP_2923hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (15/25);  new base G (4/8);  total (19/36)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ATCCAGCTGCAAGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCATGGGCGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGGGCCCGGCCCGTCAGGCGGCGCTGCCG  >  NC_002947_CJ‑RC/3323458‑3323747
                                                                                                                                                  |                                                                                                                                                
aTCCAGCTGCAAGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGtg                                                                                                                                                 >  2:117929/1‑146 (MQ=255)
  ccAGCTGCAAGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGc                                                                                                                                               <  5:237474/147‑1 (MQ=255)
  ccAGCTGCAAGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGc                                                                                                                                               <  1:28620/147‑1 (MQ=255)
      cTGCAAGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCATg                                                                                                                                           <  6:15429/147‑1 (MQ=255)
      cTGCAAGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCATg                                                                                                                                           <  6:243742/147‑1 (MQ=255)
      cTGCAAGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCATg                                                                                                                                           <  6:9257/147‑1 (MQ=255)
       tGCAAGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCATgg                                                                                                                                          <  7:14571/147‑1 (MQ=255)
       agCAAGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGGCGCCCTgg                                                                                                                                          >  7:123271/2‑147 (MQ=255)
         cAAGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTAGCCCTGGGc                                                                                                                                        >  2:79311/1‑147 (MQ=255)
          aaGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCATGGGc                                                                                                                                        <  8:162426/146‑1 (MQ=255)
          aaGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCAAGGGcc                                                                                                                                       >  4:226598/1‑146 (MQ=255)
              gCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCCTGGGCgcccc                                                                                                                                   >  1:232322/1‑143 (MQ=255)
              gCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCATGGGCGAcgc                                                                                                                                   <  3:26852/147‑1 (MQ=255)
                  aGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCATg                                                                                                                                           <  2:199197/135‑1 (MQ=255)
                  aGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCATg                                                                                                                                           >  1:199197/1‑135 (MQ=255)
                   gCCAGTTCCTCTTGCAACGGCACGATGCGTACAAACGCGTGAATGTGTTGGGCCTCGCGTTTTACCTGCTTGATGCGCCGTTTCAGCTCACTGCCCTGCCGGTCACCGGCAAGCATTGCCGT‑GCGGTCGCCATGGGCGACGCGCca                                                                                                                               <  2:147753/146‑1 (MQ=255)
                     cAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GGGGGGGCCCGGGGGGGCGCGcccccc                                                                                                                            >  5:178311/1‑143 (MQ=255)
                            tctGGCAACGGCACTACGCGAACAACCGCGTGAAAGGTATGCGCCTCGCGGTTAACCTGCTTTATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGCCGCCATGGGCGACGCGCCACAGCACTTc                                                                                                                      <  4:18789/146‑1 (MQ=255)
                               ggCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCATGGGCGCCGCCCCACAGCAcatacta                                                                                                                   >  8:252901/1‑140 (MQ=255)
                                 cAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCAATGGCGACGCGCCCCCGCCCGTCATaaaa                                                                                                                >  2:10192/1‑144 (MQ=255)
                                         cGAAGCGTACAACGGCGGGCAAGTGAGGCGCCTCGGGGGTTACCTGCTTTATGGGGGGTTGCTGCCCACTCCCCCGCCGGCCCCCGGCCATC‑TTTCCGTGGCGGGCGCCATGGGCGAGGCGCCACAGCACTTCATACAGCAGGTTcc                                                                                                        <  2:101385/147‑1 (MQ=255)
                                            aGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCCAGGGCGACGCGCCCCACCACGTCATAAAGCAGGTTCCacc                                                                                                     >  8:267430/1‑145 (MQ=255)
                                             gCGTACAAACGCGCGCAAGTCCTGCGCCTCGCGGGGTACCTGCTTGAGGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGGCGCCATGGGCGACGCGCCACAGCACTTCATACAGCAGGTTCCAgcg                                                                                                    <  6:247001/147‑1 (MQ=255)
                                                tACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTGGCCCAGGGGGCCGCCCCCCCCCCCTTCATAAAGCACGTTGCAgcccgg                                                                                                 >  5:77009/1‑143 (MQ=255)
                                                      cgcgTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GGGGGGGCCCAGGGGGGCGCGCCCCCGCCCGAGATAAAGCAGGGTGCAGCCCGGCGCGcc                                                                                           >  3:49438/1‑147 (MQ=255)
                                                      cgcgTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCCATGGCGCCCCCCCCCACCCCATCAAAAACCAGGTTACAGCGCTGCTCGcc                                                                                           >  6:182997/1‑147 (MQ=255)
                                                              aGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCAAGGGCGACGCGCCCCAGCACATCATACAGCACGTTGCAGCGCTGCTCGCCACCGTAGc                                                                                   >  2:90917/1‑147 (MQ=255)
                                                               gTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCATGGGCGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCg                                                                                  <  6:251828/147‑1 (MQ=255)
                                                                      gcCTCGGGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTCCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCATGGGCGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGc                                                                            <  5:90449/146‑1 (MQ=255)
                                                                      gcCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCATGGGCGACGCG‑CACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGCCt                                                                          <  6:228858/147‑1 (MQ=255)
                                                                       ccTCGCGGGTAACGTGGTTGATGCGCCGTTGCAGCTCACTGCCCAGCGGGGCACCGGCCTGCATTGCCGT‑GCGGTGGCCAGGGCGGACGCGCCACAGCACTTCATACTGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGCCt                                                                          <  7:90201/147‑1 (MQ=255)
                                                                          cgcgGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCAATGGCGACGCGCCACAGCACATCAAAAAGCAGGTTACAGCGCTGCTCGCCACCGTAGCGAGAGGCCAGCt                                                                       >  8:266542/1‑147 (MQ=255)
                                                                                     tGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCCCCGGCCAGCATTGCCGT‑GCGGTCGCAATGGGCTACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTc                                                            <  4:120674/147‑1 (MQ=255)
                                                                                     tGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGGGGCCAAGGGGGACGCGCCCCAGCCCATGAAAAAACAGGGTGCACCGCTGCGGGCCCCGGTTGCGAGAGGCCGGCACCAACTGGCTc                                                            >  2:53407/1‑147 (MQ=255)
                                                                                      gCTTGATGCGCCGTGCCTGCCCCCCCCCCCGCCGGCCCCCGGCAAGCATTCCCGG‑GCGGCCCCCATGGGCTACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTca                                                           <  4:166792/147‑1 (MQ=255)
                                                                                                ccGTTGCTGCTCACTGCCCTGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCATGGGCGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGc                                                 <  6:87710/147‑1 (MQ=255)
                                                                                                 cGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GGGGTGGCCCAGGGGGACCCCCCCCACCACATAAAAAAACACGTTAAACCCCAGCACGCCCCCGGAGGCAGAGGCCAGCTCCAAAAAGCTCAGCACTGCGGcc                                                >  4:100037/1‑147 (MQ=255)
                                                                                                  gTTGCAGCTCAGTGCCCCGCCGTTCACCGGCCAGCATTGCGGG‑GGGGGCGCAATGGCCGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCg                                               <  3:162637/147‑1 (MQ=255)
                                                                                                  gTTGCAGCTCACTGCCCCGCCGGCCACCGCCCAGCATTGCCGT‑GCGGGCGCCATGGGCTACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCg                                               <  1:101547/147‑1 (MQ=255)
                                                                                                  gTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCATGGGCGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCg                                               <  4:49438/147‑1 (MQ=255)
                                                                                                  gTTGCAGCTCACTGCCCAGCCGGACACCGGCCACAATTGCCGG‑GCGGTCGCCAGGGGCGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCg                                               <  7:197733/147‑1 (MQ=255)
                                                                                                         cTCACTGCCCAGCCGGTCACCGGCCATCATTCCGGT‑GGGGGCGCCATGGGCTACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACttt                                        <  1:28209/147‑1 (MQ=255)
                                                                                                          tCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCCTGGGCGACGCGCCCCCGCACGTAATACAGCAGGTTGCAGCCCAGCGCGCCACCGTAGCGAGAGGCCGGCTCCAACAGGCGCAGCAGTGCCGCCGGGGCtttt                                       >  6:194902/1‑146 (MQ=255)
                                                                                                          tCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGATCGCCATGGGCGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTg                                       >  7:159250/1‑147 (MQ=255)
                                                                                                                    gCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCATGGGCGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAg                             <  1:94661/147‑1 (MQ=255)
                                                                                                                    gCCGGTCACCGGCCAGCATTGCCGT‑GCGGGCGCCATGGGCGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAg                             <  2:54243/147‑1 (MQ=255)
                                                                                                                      cGGTCACCGGCCAGCATTGCCGG‑GCGGGCGCCATGGGCGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCGGTGCGGCCGGGACTTTGGCCCGGAAAggg                           <  1:44062/147‑1 (MQ=255)
                                                                                                                           aCCCGCCAGCACGGCCGC‑GCCGCCGCCATGGCCGACGCGCCACAGCACTTCATACAGCAGGCTCCAGCGCTGCCCGCCACGGACGCGAGAGGCCCGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGggcccgg                      <  6:237683/147‑1 (MQ=255)
                                                                                                                              ggCCTGCTTTGCCGT‑GCGGTCGCCTTGGGCGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGggcccggccc                   <  4:125121/147‑1 (MQ=255)
                                                                                                                                ccAGCATTGCCGT‑GCGGTCGCCATGGGCGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGGGCCCGGCCCGt                 <  8:123271/147‑1 (MQ=255)
                                                                                                                                ccAGCATTGCCGT‑GCGGTCGCCAGGGGCGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGGGCCCGGCCCGt                 <  8:125257/147‑1 (MQ=255)
                                                                                                                                   gccttGCCGT‑GCGTTCGCCCTGGGCGACGCGCCACCGCACTTCCTACACCAGGTTCCAGCGCTGCTCGCCACGGTATCGAGAGTCCGGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGGGCCCGGCCCGTCAg              <  4:181465/144‑1 (MQ=255)
                                                                                                                                      ttGCCGT‑GCGGGCCCCATGGGCGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGGGCCCGGCCCGTCAggcg           <  3:162119/147‑1 (MQ=255)
                                                                                                                                        gCCGT‑GGGGTCTCCATGGGCGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGGGCCCGGCCCGTCAggcgg          <  6:106155/146‑1 (MQ=255)
                                                                                                                                               cGGTCGCCATGGGCGACGCGCCACAGCACTTCATACAGCAGGTTCAAGCGCTGCTCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGAGCGGCCGGGACTTTGGCCCGGAAAGGGCCCGGCCCGTCAGGCGGCGCTGcc   >  8:49397/1‑147 (MQ=255)
                                                                                                                                                ggTCGCCATGGGCTACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGGGCCCGGCCCGTCAGGCGGCGCTGCCg  <  1:117929/147‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                
ATCCAGCTGCAAGTGCTCAGCCAGTTCCTCTGGCAACGGCACGAAGCGTACAAACGCGTGCAAGTGATGCGCCTCGCGGGTTACCTGCTTGATGCGCCGTTGCAGCTCACTGCCCAGCCGGTCACCGGCCAGCATTGCCGT‑GCGGTCGCCATGGGCGACGCGCCACAGCACTTCATACAGCAGGTTCCAGCGCTGCTCGCCACGGTAGCGAGAGGCCTGCTCCAACTGGCTCAGCAGTGCGGCCGGGACTTTGGCCCGGAAAGGGCCCGGCCCGTCAGGCGGCGCTGCCG  >  NC_002947_CJ‑RC/3323458‑3323747

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A