Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F13 I0 R1
|
203 |
85.6 |
3649704 |
98.8% |
3605907 |
146.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
5,512,723 |
T→G |
17.9% |
L36R (CTC→CGC) |
urtB → |
urea ABC transporter permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 5,512,723 | 0 | T | G | 17.9%
| 89.5
/ 2.8
| 64 | L36R (CTC→CGC) | urtB | urea ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base T (21/29); new base G (5/7); total (28/36) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCGACAACGCCCTGGCCAGCCACCA > NC_002947_CJ‑RC/5512579‑5512870
|
ccGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGaa < 3:145071/149‑1 (MQ=255)
cgcgAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCACCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAg < 2:379316/149‑1 (MQ=255)
gcgAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCACGCCGGCCACCTCCAAga > 7:94499/1‑148 (MQ=255)
aTCCAACACCGATTTCCTGTTTTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGATAACCCCCCTGTCAACCCCCGCCAGCGAGGGCTATTTCTTTCTCACCGCCACCCCGGCCGAGCCGGCCGGCCTGCTCGAAGGCTGGgc < 6:191432/148‑1 (MQ=255)
tCCAACACCTATTTCCAGTATTGCCCGCATGCTCATACTCCTGCTCACCCTCCTGCTTCTAATCCCCGTGGCAACCCACGCCAGCGTGGGCTATTTTTTTCTCACCGCCAAGCCCGCCGAGCTGGCCGGCGTGCTCGAAGGCTGGgcag < 6:248685/149‑1 (MQ=255)
cAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTAACCCTCCTGCTGATAATCACCCTCGCAACCCACGACAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCACGCCCGCCTGCACCAAGGCATGgcacca > 6:114583/1‑149 (MQ=255)
aaCACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCGCGAAGGCTGGgcagca > 4:125846/1‑148 (MQ=255)
acacCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGCCCCGCCTGCGCCAACGCGGGgcacccc > 7:160026/1‑144 (MQ=255)
acacCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGCCCCGCCAGAACCAAGGCAGGGCAGcac > 4:360471/1‑148 (MQ=255)
cGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCCGGCCGGCCAGCTCGAAGGCTGGGCAGCACAAccc > 8:408060/1‑149 (MQ=255)
gttttCCAGGTTCGCGCGCTTGCTCAGCCTCCTGGACCCCCTCCCGCGGCTAATCCCCCTGGCAACCCTCGCCAGCTCGGGCGATTTCTTTCTCACCGCCAAGCCCGCGGACCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCg < 2:246622/147‑1 (MQ=255)
ttCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCCGCACAACCCCATg > 8:127760/1‑149 (MQ=255)
gATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCGGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCcgcgc < 6:247268/149‑1 (MQ=255)
gATTCCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAAGCCCCCTCCCACCCCCCGCCAGGGAGGGCTAATTCTTTCTCACCCCCACGCCCGCCGAGCAGGCCGGCCTGCGCGAAGGCTGGGCAGCACAACCCGATGCcgcgc < 5:164657/149‑1 (MQ=255)
tCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCCGGCCGGCCGGCTCGAAGGCTGGGGACCCCAACCCCAAGCCGCGCGCCCGCCGCGGCGGGaaaa > 7:358323/1‑148 (MQ=255)
cTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTc < 5:248206/96‑1 (MQ=255)
cTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTc > 6:248206/1‑96 (MQ=255)
ttgctgcTTATCCCCCTGCCAACCAACGCTAGCGTGGGCTATTTCTTTCTCACCGCCTTGCCCGCCTTGCTGGCCGGCTTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGc < 6:244528/146‑1 (MQ=255)
ctgctgCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCCGCCAGCTCGAAGGCTGGGCAGCACAACCCCAAGCCGCGCGCCAGCCGCAGCTGGAAAACCAGCCCCAAGGCCg > 2:146500/1‑149 (MQ=255)
ctgctgCAAACCCCCCTCCCACCCCACGCCTGCGTGGGCTAATTCTTTCACCCCGCCCCGCCCGCCGAGCCGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGc < 5:394794/147‑1 (MQ=255)
tgctAATCCCCCTGCCAACCCACGCCAGCGTGGGCTATTTCTTTCTCACCGCCAAGCCCGCCGAGCTGGCGGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATc < 8:358323/149‑1 (MQ=255)
cccccccTGGCACCCCACGCCAGGGAGGGCGAATTCTTTCTCACCGCCCAGCCCGCCGCGCAGGCCGGCCTGCGCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGccac < 3:215670/147‑1 (MQ=255)
acccccccCGCACCCCACGCCCGCGCGGGCGAATTCTTACCCCCCCCCACCCCCCCCGCCCACGCCGCCCGGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGccac < 7:142688/147‑1 (MQ=255)
aTCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCGGCTCGAAGGCGGGGCCGCCCAACCCGATGCCCCGCGCCAGCCGCTGCTGGAAAACCTGCGCCCAGGCCCCCTCGccac > 4:40286/1‑149 (MQ=255)
cccTTGCAACCCACGCCAGCGTGGGCTTATTATATCTCCCCGCCCCGCCCGCCCCGCTGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAAt < 3:360471/149‑1 (MQ=255)
cccTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCCGGCCGGCCTGCTCGAAGGCAGGGCGGCCCAACCCCAAGCCCCGCCCCAGCCCCTGCTGGAAAAACAGCGCCAACGCCGCCACGCCACCaa > 4:429622/1‑148 (MQ=255)
cccTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCCGGCCCGCCGGCGCGCAAGCGGGGGCGCACCACCCCCATCCCCCCCCCAGCCCCGGCTGGGAAAACATCGCCCACGCCCCATCGCCACCaa > 4:35656/1‑148 (MQ=255)
cccTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCGGGCCTGCTCGAAGGCTGGGCAGGACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCaaa > 1:235345/1‑148 (MQ=255)
cccTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCACGCCGGCCTGCGCGAAGGCTGGGCAGCCCAACCCCAAGCCGCGCGCCAGCCGCGCCGGGAAAACCACCGCCAAGGCCCCAACGCCACCaa > 4:219167/1‑148 (MQ=255)
cccTGGAAACCCACGCCAGCGTGGGCTTATTCTTTCACCCCCCCACGCCCGCCTAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAAt < 4:330611/149‑1 (MQ=255)
cccTCGCAACCCACGCCAGCGTGTGCTAATTCTCTCTCCCCCCCCAGCCCGCCGCGCCGGCCGGCGTGCGCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAAt < 3:411624/149‑1 (MQ=255)
ccTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCCGGCCCGCCAGCTCGAAGGCTGGGCAGCACAACCCCAAGCCCCCCCCCAGCCGCAGCGGGAAAACCAGCGCCAAAGCCCCAGCGccacca > 4:395109/1‑146 (MQ=255)
gccacccccCGCCCGCGAGGGCTAATTCTTTCTCACCCCCACGCCCGCCGCGCCGGCCGGCGTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGa < 5:335324/142‑1 (MQ=255)
cccccccACCCCCGCGCGGGCTAATTCTTACACCCCCCCCCGCCCCCCCAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGAc < 7:408060/143‑1 (MQ=255)
ccccCGCCCGCGAGGGCTAATTCTTTCACCCCCCCACCCCCGCCGAGCAGGCCGGCCGGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCgct < 5:149589/103‑1 (MQ=255)
cccACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCGGGGCAGCACAACCCGATGCCGCGCGCCAGCCGCTGCTGGAAAACCTGCGCCAACGCCGCCACGCCACCAAAGACAAccg > 6:384831/1‑148 (MQ=255)
ccACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGGCGGCCGGCCGGCTCGCAGGCTGGGCGGCGCCACCCCAAGCCGCGCGCCAGCCGCGGCGGGAAAACCGGCGCCCACGCCGCCGCGCCCCCCAAGACACgccc > 3:94201/1‑146 (MQ=255)
ccACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAACGCTGGGGAGCACAACCCCATGCCCCGCGCCAGCCGCTGCTGGAAAACCAGCGCCAAGGCCGCATCGCCCCCAAAGACAAgccc > 8:443535/1‑146 (MQ=255)
ccACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCGGCTCGAAGGCTGGGCAGCCCAACCCCATGCCGCGCGCCGGCCGCTGCGGGAAAACCAGCGCCAAAGCCGCAACGCCACCAATGACAAgcgc > 4:266472/1‑148 (MQ=255)
aCGCCAGCGAGGGCTAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAg < 8:361149/149‑1 (MQ=255)
gctagtgCGAATTCTTTCTCACCCCCCAGCCCGCCGCGCCGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTgcgc < 3:436527/143‑1 (MQ=255)
ggctatttctttcaCCCCCCCACCCCCGCGGCGCCGGCGGCCCGGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGa < 2:344900/142‑1 (MQ=255)
ggCGAATTCTTTCTCACCGCCAACCCCGCCGAGCCGGCGGGCCGGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGaa < 1:11786/149‑1 (MQ=255)
gCGAATTATTTCTCCCCCCCACGCCCGCCGCGCCGGCGGGCCGGCGCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGaac < 2:165680/149‑1 (MQ=255)
ttaaTTCTTTCTCACCGCCATGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGaac < 3:372019/146‑1 (MQ=255)
ttctttctCACCGCCAAGCCCGCCGAGCAGGCCCGCCTGCTCGAAGGCTGGGCAGCACAACCCCATGCCCCGCGCCAGCCCCTGCAGGAAAACCAGCGCCAAGGCCGCCTAGCCACCAAAGACAAACCCAAGGTGCGCCTGAACAAccc > 8:455124/1‑148 (MQ=255)
tctcACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCGCGAACGCTGGGCAGCACAACCCCCAGCCGCGCGCCTGCCGCGGCGGGAGAACCAGCCCCAACGCCGCAACGCCCCCAATGACAACCGCAAGGAGCGCCTCAAAAACCGCCAgc > 4:400858/1‑149 (MQ=255)
cACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGcgcg > 2:277931/1‑149 (MQ=255)
ccccccACGCCCGCCGCGCCGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTgcgc < 1:146500/143‑1 (MQ=255)
aCCGCCATGCCCGCCTTGCTGGCGGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTgcgc < 8:94499/147‑1 (MQ=255)
aCCGCCAAGCCCGCCGAGCCGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGAAGCCGCGCGCCAGCCGCTGCTGGAAAACCAGCGCCAACGCCGCCTCGCCCCCAAAGACAAGCGCAAGGTGCGCCTGAACAACCCCCTGCGCgg > 4:426849/1‑149 (MQ=255)
aCCCCCAACCCCGCCTCGCAGGCGGGCGTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGcgcg < 2:381224/148‑1 (MQ=255)
ccgccccgccCGCCGCGCCGGCCGGCCGGCGCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGc < 5:384831/149‑1 (MQ=255)
cGCCAAGCCCGCCGAGCAGGCCGGCCGGCTCGAAAGCTGGGCAGCACAACCCCCATCCCCCCCCCAGCCGCTGGGGGAAAAACAGCCCCCAAGCCGCCTAGCCACCAATTACAACCGCAAAGTGGGCCAGAACAACCCCCAGCGCGGcc > 8:424943/1‑149 (MQ=255)
acgCCCGCCGCGCAGGCCGGCCTGCGCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGAt < 1:51156/147‑1 (MQ=255)
cccccgccccgcCGGCCGCCCGGCGCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATc < 3:35656/147‑1 (MQ=255)
gcgccggccggccTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCGACAACGc < 7:127760/144‑1 (MQ=255)
cggccggccTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGACACCAATGACAAGCTCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCGACAACGCCCTg < 5:114583/148‑1 (MQ=255)
aGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCGACAACGCCCTg < 2:146306/149‑1 (MQ=255)
gccggccTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCGACAACGCCCTgg < 1:132751/148‑1 (MQ=255)
gccggccTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCGACAACGCCCTgg > 2:132751/1‑148 (MQ=255)
ccggccTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCGACAACGCCCTGgcc > 7:406069/1‑149 (MQ=255)
cggccCGCTCCAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCGACAACGCCCTGgcca < 3:400858/149‑1 (MQ=255)
cTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCGACAACGCCCTGgccagcca > 1:262731/1‑149 (MQ=255)
gtCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCGACAACGCCCTGGCCAGccacca < 2:352905/148‑1 (MQ=255)
tCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCGACAACGCCCt > 3:356079/1‑136 (MQ=255)
tCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCGACAACGCCCt < 4:356079/136‑1 (MQ=255)
|
CCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCGACAACGCCCTGGCCAGCCACCA > NC_002947_CJ‑RC/5512579‑5512870
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
