Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F61 I1 R1
|
63 |
66.6 |
2847048 |
98.6% |
2807189 |
146.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
4,635,417 |
G→T |
S149Y (TCC→TAC) |
uvrY ← |
BarA/UvrY two‑componenent system response regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 4,635,417 | 0 | G | T | 100.0%
| 244.6
/ NA
| 71 | S149Y (TCC→TAC) | uvrY | BarA/UvrY two‑componenent system response regulator |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (34/37); total (34/37) |
GTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGT > NC_002947_CJ‑RC/4635278‑4635561
|
gTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGt > 3:258945/1‑149 (MQ=255)
tGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACg < 7:59295/147‑1 (MQ=255)
tGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACg < 7:292362/147‑1 (MQ=255)
aCCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGgag < 5:35995/148‑1 (MQ=255)
cGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGAcc > 4:102020/1‑149 (MQ=255)
gagaGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGAccc > 1:148253/1‑149 (MQ=255)
gTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTg > 8:177854/1‑148 (MQ=255)
tttttCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCg > 2:36594/1‑149 (MQ=255)
ttCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCt > 1:37196/1‑149 (MQ=255)
aaaGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTgg > 1:341634/1‑148 (MQ=255)
tCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGt < 5:26717/149‑1 (MQ=255)
cGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGttt > 3:278317/1‑149 (MQ=255)
gATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGttt > 3:290262/1‑148 (MQ=255)
cGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAgc < 7:207370/147‑1 (MQ=255)
aaGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAAc > 4:325913/1‑149 (MQ=255)
gTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAAct > 8:160998/1‑148 (MQ=255)
ttGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAActgct < 1:36594/148‑1 (MQ=255)
tGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAActgctg < 4:133542/148‑1 (MQ=255)
gACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCATCTGCTgg < 3:188041/148‑1 (MQ=255)
gACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTgg > 8:204679/1‑148 (MQ=255)
aCGGGCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCTACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGAGCCAACTGCTggg < 2:35530/148‑1 (MQ=255)
cGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAAc < 2:169288/140‑1 (MQ=255)
cGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAAc > 1:169288/1‑140 (MQ=255)
cGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTggg < 7:177854/147‑1 (MQ=255)
ggTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGa > 4:65007/1‑149 (MQ=255)
gTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGAt < 5:97589/149‑1 (MQ=255)
tCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATc < 5:205695/149‑1 (MQ=255)
cTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATc > 8:196132/1‑148 (MQ=255)
tGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTg > 8:283153/1‑148 (MQ=255)
gagGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGa < 2:124853/149‑1 (MQ=255)
gagGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGa > 6:198862/1‑149 (MQ=255)
gCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGata < 7:160998/148‑1 (MQ=255)
gCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGata > 2:246087/1‑148 (MQ=255)
acaACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCggg > 7:152981/1‑140 (MQ=255)
acaACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAg > 4:71765/1‑149 (MQ=255)
caACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGc < 8:152981/140‑1 (MQ=255)
aaCTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAgcg > 1:20255/1‑149 (MQ=255)
cGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCg > 2:192425/1‑149 (MQ=255)
atgatCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCaa < 8:48379/148‑1 (MQ=255)
tgatCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCaaa < 7:204679/148‑1 (MQ=255)
tCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGc > 2:9737/1‑148 (MQ=255)
cACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGa > 8:302622/1‑148 (MQ=255)
cACTTTCTGGCAACCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGAc < 5:290452/149‑1 (MQ=255)
aCTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGa < 7:113087/147‑1 (MQ=255)
cTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACg > 2:111824/1‑148 (MQ=255)
cTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGa < 1:22498/149‑1 (MQ=255)
tCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGaa < 2:37342/147‑1 (MQ=255)
tCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAAt < 3:71765/148‑1 (MQ=255)
ggCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGc > 7:141237/1‑148 (MQ=255)
gCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAGGGCCAGACGAATGGc < 5:116324/147‑1 (MQ=255)
cAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTg < 1:111824/149‑1 (MQ=255)
cAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTg < 1:192425/149‑1 (MQ=255)
cgacgaTCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACTAATGGCCTGGAcc < 2:20255/149‑1 (MQ=255)
acgaTCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACACCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCAGGACCAt > 2:286782/1‑149 (MQ=255)
cgaTCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCTTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCAtt < 2:329484/149‑1 (MQ=255)
gaTCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCAttt > 5:149560/1‑149 (MQ=255)
tcaGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAAACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTc > 2:2407/1‑148 (MQ=255)
tgggCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAg < 1:87685/148‑1 (MQ=255)
gggCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAg < 7:302622/148‑1 (MQ=255)
ggCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGc > 5:95791/1‑149 (MQ=255)
ggCAATCTCGATATCCCGTTCGTACAACGCGTCGAACGGATACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTCTGCGATCTGCTGGCTGATATAGCGCTCGCCGGAAAAGGACAGACTAATGGCCTGAACCATTACGTAAAgga > 2:87685/1‑148 (MQ=255)
ggATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGc > 6:351636/1‑141 (MQ=255)
ggATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGc < 5:351636/141‑1 (MQ=255)
ggATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCAccc > 2:73168/1‑149 (MQ=255)
gATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCACTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCAccc < 6:329192/148‑1 (MQ=255)
tttCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCtt < 8:141237/148‑1 (MQ=255)
tttCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTg < 5:118200/149‑1 (MQ=255)
ccGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCa < 2:37196/149‑1 (MQ=255)
cGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAg > 3:203616/1‑149 (MQ=255)
cGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAg < 4:258945/149‑1 (MQ=255)
ttCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGt < 6:348657/149‑1 (MQ=255)
|
GTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGT > NC_002947_CJ‑RC/4635278‑4635561
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGG > NC_002947_CJ‑RC/4635277‑4635560
|
CGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTC > NB501016:282:H2V7GAFX2:2:21207:7836:10367/1‑151 (MQ=60)
GGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGG < NB501016:282:H2V7GAFX2:4:11412:19827:5851/150‑1 (MQ=60)
GGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGG < NB501016:282:H2V7GAFX2:4:21510:22245:9384/150‑1 (MQ=60)
GACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGA < NB501016:282:H2V7GAFX2:3:11408:5583:6624/150‑1 (MQ=60)
CGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCC > NB501016:282:H2V7GAFX2:1:11305:9357:15749/1‑151 (MQ=60)
TTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTG > NB501016:282:H2V7GAFX2:1:11107:14261:18581/1‑151 (MQ=60)
CAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGA > NB501016:282:H2V7GAFX2:1:21309:26122:17029/1‑150 (MQ=60)
ATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTT < NB501016:282:H2V7GAFX2:3:11406:10401:8065/151‑1 (MQ=60)
CCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTC > NB501016:282:H2V7GAFX2:2:21211:23286:9071/1‑151 (MQ=60)
CGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTC > NB501016:282:H2V7GAFX2:2:21302:5319:6804/1‑150 (MQ=60)
AACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCG < NB501016:282:H2V7GAFX2:4:21405:20543:16110/150‑1 (MQ=60)
ATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTG < NB501016:282:H2V7GAFX2:1:11107:20416:16362/150‑1 (MQ=60)
TGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCATCTGCTGGG < NB501016:282:H2V7GAFX2:2:21102:8040:11199/150‑1 (MQ=60)
GACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGC < NB501016:282:H2V7GAFX2:4:11611:20529:19465/150‑1 (MQ=60)
ACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACT > NB501016:282:H2V7GAFX2:1:11310:10564:2635/1‑142 (MQ=60)
GGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATC < NB501016:282:H2V7GAFX2:3:11508:14034:12538/151‑1 (MQ=60)
GTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCT < NB501016:282:H2V7GAFX2:3:21405:14633:16042/151‑1 (MQ=60)
AGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATAT < NB501016:282:H2V7GAFX2:4:11608:14672:11512/151‑1 (MQ=60)
CACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCT > NB501016:282:H2V7GAFX2:4:11606:2474:19085/1‑143 (MQ=60)
CAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGC > NB501016:282:H2V7GAFX2:1:11104:26370:15748/1‑151 (MQ=60)
GATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAG < NB501016:282:H2V7GAFX2:4:21405:6250:6168/151‑1 (MQ=60)
GCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGAC < NB501016:282:H2V7GAFX2:4:11510:7856:17529/150‑1 (MQ=60)
GCACTTTCTGGCAACCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACG < NB501016:282:H2V7GAFX2:3:21511:19878:9770/151‑1 (MQ=60)
ACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAA < NB501016:282:H2V7GAFX2:1:11105:21136:4502/151‑1 (MQ=60)
TTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATG < NB501016:282:H2V7GAFX2:2:11203:14503:15263/150‑1 (MQ=60)
TGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCT > NB501016:282:H2V7GAFX2:4:11604:23394:10839/1‑151 (MQ=60)
GGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAGGGCCAGACGAATGGCC < NB501016:282:H2V7GAFX2:3:11512:3570:5873/149‑1 (MQ=60)
GCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGG < NB501016:282:H2V7GAFX2:1:21102:22734:15984/151‑1 (MQ=60)
GCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGG < NB501016:282:H2V7GAFX2:1:11210:23764:8632/151‑1 (MQ=60)
CGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTC > NB501016:282:H2V7GAFX2:3:11606:20447:10310/1‑151 (MQ=60)
gtGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGT < NB501016:282:H2V7GAFX2:1:11205:23515:14000/149‑1 (MQ=60)
CAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGG < NB501016:282:H2V7GAFX2:4:21512:1336:9338/151‑1 (MQ=60)
GGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCC > NB501016:282:H2V7GAFX2:3:11508:1673:5897/1‑151 (MQ=60)
TGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCC < NB501016:282:H2V7GAFX2:3:21611:4009:11993/143‑1 (MQ=60)
ATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGG < NB501016:282:H2V7GAFX2:3:11512:15339:12521/151‑1 (MQ=60)
CCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGG > NB501016:282:H2V7GAFX2:2:21105:9141:20141/1‑151 (MQ=60)
GTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGG < NB501016:282:H2V7GAFX2:1:21203:10597:10807/112‑1 (MQ=60)
|
CGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGG > NC_002947_CJ‑RC/4635277‑4635560
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
