Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F13 I0 R1
|
203 |
85.6 |
3649704 |
98.8% |
3605907 |
146.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
4,635,418 |
A→G |
37.8% |
S149P (TCC→CCC) |
uvrY ← |
BarA/UvrY two‑componenent system response regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 4,635,418 | 0 | A | G | 37.8%
| 65.7
/ 97.0
| 90 | S149P (TCC→CCC) | uvrY | BarA/UvrY two‑componenent system response regulator |
| Reads supporting (aligned to +/- strand): ref base A (26/30); new base G (18/16); total (44/46) |
| Fisher's exact test for biased strand distribution p-value = 6.64e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.42e-01 |
GTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGT > NC_002947_CJ‑RC/4635271‑4635561
|
gTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGa > 8:400434/1‑148 (MQ=255)
tCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACaa > 6:296136/1‑149 (MQ=255)
gACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAAc < 2:152846/148‑1 (MQ=255)
gCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCg > 4:54821/1‑148 (MQ=255)
gCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCg > 3:329063/1‑148 (MQ=255)
gTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAAc < 7:27831/147‑1 (MQ=255)
gTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACg > 6:170395/1‑148 (MQ=255)
tGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACg > 3:315298/1‑147 (MQ=255)
cGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACAATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGAcc > 1:307932/1‑149 (MQ=255)
gagTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCt > 8:215401/1‑149 (MQ=255)
gagTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCt > 2:415298/1‑149 (MQ=255)
ttCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCt > 5:428648/1‑149 (MQ=255)
ttCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCt > 1:237659/1‑149 (MQ=255)
tCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCt < 3:288880/148‑1 (MQ=255)
tCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGt > 4:177079/1‑149 (MQ=255)
gATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGttt > 5:51141/1‑148 (MQ=255)
gATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGttt > 6:195045/1‑148 (MQ=255)
aCGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAgc < 4:258287/148‑1 (MQ=255)
aCGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAgc < 1:88337/148‑1 (MQ=255)
cGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAgcgc < 6:51141/149‑1 (MQ=255)
cGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACTCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAgcgc < 4:352735/149‑1 (MQ=255)
gTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGcc > 7:75946/1‑148 (MQ=255)
aTTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAActgct > 3:51050/1‑149 (MQ=255)
ttGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCTATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAActgct < 5:156192/148‑1 (MQ=255)
ttGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAActgctg < 5:3851/149‑1 (MQ=255)
gACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTgg < 7:213780/148‑1 (MQ=255)
aCGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGc > 6:44730/1‑149 (MQ=255)
aCGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTggg < 6:319887/148‑1 (MQ=255)
aCGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGc > 8:123322/1‑149 (MQ=255)
gTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGAt < 7:13340/149‑1 (MQ=255)
tCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGTAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATc > 3:372756/1‑149 (MQ=255)
tCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATc > 7:193177/1‑149 (MQ=255)
cTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCt > 2:196602/1‑149 (MQ=255)
ggCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCACGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCgg < 8:428415/149‑1 (MQ=255)
agagGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTg < 1:357087/149‑1 (MQ=255)
agagGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTg < 7:47634/149‑1 (MQ=255)
ggCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGata > 6:55325/1‑149 (MQ=255)
gCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGata > 8:88035/1‑148 (MQ=255)
gCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTgg < 7:463617/130‑1 (MQ=255)
gCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTgg > 8:463617/1‑130 (MQ=255)
gCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGata > 6:34527/1‑148 (MQ=255)
cacaACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGAtata < 6:428648/149‑1 (MQ=255)
acaACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAg > 4:202726/1‑149 (MQ=255)
aaCTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAgcg > 7:359186/1‑149 (MQ=255)
aaCTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAgcg > 6:332559/1‑149 (MQ=255)
cTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCt > 4:344609/1‑149 (MQ=255)
ttGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTg > 8:184332/1‑149 (MQ=255)
gTCGGTGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCTTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTg < 8:464995/147‑1 (MQ=255)
gTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTgg < 5:44730/148‑1 (MQ=255)
tCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGcc > 1:169410/1‑149 (MQ=255)
gagaTGATCTGCACTTACTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCgg > 2:369917/1‑148 (MQ=255)
atgatCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCaaa < 7:23413/149‑1 (MQ=255)
tgatCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAg < 4:68347/149‑1 (MQ=255)
tgatCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAg > 1:16367/1‑149 (MQ=255)
tgatCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAg < 2:169410/149‑1 (MQ=255)
atCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAgg < 6:255851/148‑1 (MQ=255)
atCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGc > 2:176932/1‑149 (MQ=255)
tGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGc > 5:247892/1‑146 (MQ=255)
tCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGaa < 3:177079/147‑1 (MQ=255)
tgtcAGCCGACGATCATCAGTGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACAGCTGGGCGATCTGCGGGCTGATATAGCTCTGGCCGGCAAAGGCCAGACTAATGGc > 2:256438/4‑149 (MQ=255)
gCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAATGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGcc < 5:170395/148‑1 (MQ=255)
cAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGCCCAGACGAATGGCCTg < 7:400434/149‑1 (MQ=255)
gCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGAc > 6:209963/1‑137 (MQ=255)
gCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGAc < 5:209963/137‑1 (MQ=255)
gCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGa < 4:315298/149‑1 (MQ=255)
ccGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGAc < 5:332559/149‑1 (MQ=255)
gaTCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCAttt > 7:42164/1‑149 (MQ=255)
atcatcAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTc < 2:307932/149‑1 (MQ=255)
atcatcAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTc < 8:75946/149‑1 (MQ=255)
atgtgggCAATGTGGTTTTCCCGTTCGGACAACGCGTGGAACGGAGTCCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCGGGGGGTTCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCgg < 6:192055/144‑2 (MQ=255)
atcaGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGt > 6:187072/1‑148 (MQ=255)
tcaGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCACCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTc > 7:179660/1‑148 (MQ=255)
tcaGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTc > 3:59541/1‑148 (MQ=255)
aGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAg < 6:81952/149‑1 (MQ=255)
aGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAg < 5:133024/149‑1 (MQ=255)
aGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAg < 7:215401/149‑1 (MQ=255)
gggCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAgg > 3:330289/1‑149 (MQ=255)
gCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGcc < 5:355305/149‑1 (MQ=255)
cAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCt < 4:329063/149‑1 (MQ=255)
gATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCt > 8:221960/1‑149 (MQ=255)
gATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCCATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCa < 7:123322/145‑1 (MQ=255)
tttCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTg < 7:184332/149‑1 (MQ=255)
tttCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTg < 7:88035/149‑1 (MQ=255)
tttCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTg < 5:404648/149‑1 (MQ=255)
tCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGt > 1:326300/1‑149 (MQ=255)
cccGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGt > 4:33668/1‑148 (MQ=255)
ccGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTTATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCa < 6:63746/149‑1 (MQ=255)
ccGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCa < 5:55325/149‑1 (MQ=255)
cGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCATAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAg < 3:54821/149‑1 (MQ=255)
cGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGTTTTCCGCGCCAACTGGTGGGCGTTCTGCGGGCTGATATTGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAg < 5:34527/149‑1 (MQ=255)
ttCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGt < 5:296136/149‑1 (MQ=255)
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GTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGT > NC_002947_CJ‑RC/4635271‑4635561
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
