Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F24 I1 R1
|
60 |
68.7 |
2919236 |
98.6% |
2878366 |
146.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
4,635,418 |
A→G |
S149P (TCC→CCC) |
uvrY ← |
BarA/UvrY two‑componenent system response regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 4,635,418 | 0 | A | G | 100.0%
| 243.5
/ NA
| 68 | S149P (TCC→CCC) | uvrY | BarA/UvrY two‑componenent system response regulator |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (38/30); total (38/30) |
GACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGG > NC_002947_CJ‑RC/4635275‑4635560
|
gACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAAcg > 6:1243/1‑149 (MQ=255)
gTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGt > 1:252035/1‑149 (MQ=255)
tCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTc < 4:190571/149‑1 (MQ=255)
cGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTc > 8:336393/1‑148 (MQ=255)
gCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCg > 8:16784/1‑148 (MQ=255)
ccGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGAc > 2:198108/1‑149 (MQ=255)
gagaGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGAccc > 3:190258/1‑149 (MQ=255)
agagTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGAcccc > 8:63784/1‑149 (MQ=255)
tttCAAAGATCCGATAACTGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCTGGCAACGCGTCGAACGGAGACCCCTGCgg < 5:53694/148‑1 (MQ=255)
tCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCTCTGCGGCt < 6:252353/148‑1 (MQ=255)
aaGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGaa > 1:228706/1‑149 (MQ=255)
aGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAAc > 2:206853/1‑149 (MQ=255)
gATCCGATAACGGTTATTATTGACGTTCTTGGGCGAGAGTCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCTACGATCATCAGTGCAATCTGGATTTCCCGTTCTGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACg < 5:13265/149‑1 (MQ=255)
cGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGttt < 8:82558/149‑1 (MQ=255)
gATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTc < 7:63784/149‑1 (MQ=255)
tAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCa < 5:1243/148‑1 (MQ=255)
gTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGcc > 6:270095/1‑148 (MQ=255)
tATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAActgc > 7:319912/1‑149 (MQ=255)
tATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAActgc > 6:90967/1‑149 (MQ=255)
gggCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGc < 7:374467/148‑1 (MQ=255)
ggCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCgg < 7:13657/149‑1 (MQ=255)
agagGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCt > 2:348654/1‑148 (MQ=255)
agGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGat < 7:112946/149‑1 (MQ=255)
caACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAgc > 4:266293/1‑149 (MQ=255)
aaCTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAgcg > 3:170819/1‑149 (MQ=255)
cTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCt < 7:148976/149‑1 (MQ=255)
ggAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCgg > 1:250492/1‑149 (MQ=255)
ggAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCg < 7:174010/148‑1 (MQ=255)
ggAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCg < 7:336393/148‑1 (MQ=255)
gatCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAgg > 5:24701/1‑149 (MQ=255)
gatCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAgg > 8:23209/1‑149 (MQ=255)
gCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGa > 6:28334/1‑149 (MQ=255)
cACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGa < 7:150920/148‑1 (MQ=255)
cACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGa < 7:237592/148‑1 (MQ=255)
tGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGc > 8:118197/1‑149 (MQ=255)
tGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGc > 5:14577/1‑149 (MQ=255)
gCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCt < 2:228706/149‑1 (MQ=255)
cAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTg < 6:76807/149‑1 (MQ=255)
gCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGa < 8:113158/149‑1 (MQ=255)
gaTCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCAttt > 1:259132/1‑149 (MQ=255)
gaTCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCAttt > 8:349325/1‑149 (MQ=255)
gaTCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCAttt > 8:348670/1‑149 (MQ=255)
atcatcAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTc < 3:266293/149‑1 (MQ=255)
tcatcaGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCg > 3:142773/1‑149 (MQ=255)
tcaGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTc > 6:310782/1‑148 (MQ=255)
aGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCaa < 2:259132/148‑1 (MQ=255)
aGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAg < 7:349325/149‑1 (MQ=255)
aGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAg < 1:206853/149‑1 (MQ=255)
gggCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAgg > 4:145057/1‑149 (MQ=255)
gggCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAgg > 6:191457/1‑149 (MQ=255)
cAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCt < 7:261017/149‑1 (MQ=255)
aaTCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTg > 6:3683/1‑149 (MQ=255)
aaTCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTg > 3:291866/1‑149 (MQ=255)
tCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCa > 2:221125/1‑149 (MQ=255)
tCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCa > 2:225988/1‑149 (MQ=255)
tCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCa > 4:22023/1‑149 (MQ=255)
ggATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCAccc > 1:3736/1‑149 (MQ=255)
tttCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGTGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTg < 7:16784/149‑1 (MQ=255)
tttCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTg < 5:99960/149‑1 (MQ=255)
tttCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTg < 5:90967/149‑1 (MQ=255)
tttCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTg < 4:255904/149‑1 (MQ=255)
tttCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTg > 8:346697/1‑149 (MQ=255)
tttCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCAGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTg > 3:6003/1‑149 (MQ=255)
ttCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTgg > 8:26037/1‑149 (MQ=255)
cccGTTCGGGCTACGCGTCGAACGGAGACCCGTGCGGCTGGATCGGTTTGAGCGCCAACTGCTGGGCGATCTGCGGGCTGATAAAGCGGTGGCCGGCTTAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGt < 6:148656/148‑1 (MQ=255)
cGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAg < 4:170819/149‑1 (MQ=255)
gTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAgg > 5:313546/1‑149 (MQ=255)
gTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAgg < 1:110597/149‑1 (MQ=255)
|
GACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGG > NC_002947_CJ‑RC/4635275‑4635560
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGTAGCC > NC_002947_CJ‑RC/4635277‑4635565
|
CGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTC > NB501016:282:H2V7GAFX2:1:21201:13493:12951/1‑151 (MQ=60)
CGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCC > NB501016:282:H2V7GAFX2:2:21101:2721:19988/1‑151 (MQ=60)
TTTTCAAAGATCCGATAACTGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCTGGCAACGCGTCGAACGGAGACCCCTGCGGC < NB501016:282:H2V7GAFX2:3:11411:10149:19655/150‑1 (MQ=60)
CAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTACCCGTTCGGGCAACGCTTCGAACGGAGACCCCTGCGGCTGGA > NB501016:282:H2V7GAFX2:1:11304:25751:19067/1‑150 (MQ=60)
AAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAAC > NB501016:282:H2V7GAFX2:1:21108:14574:18584/1‑151 (MQ=60)
AGATCCGATAACGGTTATTATTGACGTTCTTGGGCGAGAGTCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCTACGATCATCAGTGCAATCTGGATTTCCCGTTCTGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGG < NB501016:282:H2V7GAFX2:3:11403:3702:13821/151‑1 (MQ=60)
CGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCA < NB501016:282:H2V7GAFX2:4:11412:20639:15907/151‑1 (MQ=60)
ATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAG < NB501016:282:H2V7GAFX2:3:11401:7093:5780/150‑1 (MQ=60)
GTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCT > NB501016:282:H2V7GAFX2:4:21601:20062:18204/1‑151 (MQ=60)
TGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCG < NB501016:282:H2V7GAFX2:4:21612:12369:15228/150‑1 (MQ=60)
GGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGG < NB501016:282:H2V7GAFX2:4:11403:3777:11353/151‑1 (MQ=60)
GAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATA < NB501016:282:H2V7GAFX2:4:11510:15070:2138/151‑1 (MQ=60)
CAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGC > NB501016:282:H2V7GAFX2:2:11310:15380:4729/1‑151 (MQ=60)
ACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTG < NB501016:282:H2V7GAFX2:4:11605:13998:2332/151‑1 (MQ=60)
CGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGC > NB501016:282:H2V7GAFX2:1:21201:3280:6663/1‑151 (MQ=60)
CGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGG < NB501016:282:H2V7GAFX2:4:11610:6561:2109/150‑1 (MQ=60)
CGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGG < NB501016:282:H2V7GAFX2:4:21605:15045:4648/150‑1 (MQ=60)
GGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGC > NB501016:282:H2V7GAFX2:2:11107:24580:11830/1‑150 (MQ=60)
TGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGC > NB501016:282:H2V7GAFX2:3:11406:15632:1154/1‑151 (MQ=60)
GCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGAC < NB501016:282:H2V7GAFX2:4:11605:17426:9939/150‑1 (MQ=60)
GCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGAC < NB501016:282:H2V7GAFX2:4:21410:22089:5076/150‑1 (MQ=60)
GTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCC > NB501016:282:H2V7GAFX2:3:11403:23836:19002/1‑151 (MQ=60)
CGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTC > NB501016:282:H2V7GAFX2:1:21202:12596:20226/1‑151 (MQ=60)
GATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCG < NB501016:282:H2V7GAFX2:2:21207:19991:9410/151‑1 (MQ=60)
ATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGT > NB501016:282:H2V7GAFX2:2:11304:3800:19130/1‑151 (MQ=60)
CAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGG < NB501016:282:H2V7GAFX2:4:21607:10506:15241/151‑1 (MQ=60)
CAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGG < NB501016:282:H2V7GAFX2:1:21104:23044:12806/151‑1 (MQ=60)
GCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTG < NB501016:282:H2V7GAFX2:4:21502:5581:12258/151‑1 (MQ=60)
CAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGC > NB501016:282:H2V7GAFX2:2:21212:5364:14613/1‑151 (MQ=60)
TGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCT > NB501016:282:H2V7GAFX2:1:11101:18733:14294/1‑151 (MQ=60)
ATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGTGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGG < NB501016:282:H2V7GAFX2:4:11404:6396:3117/151‑1 (MQ=60)
ATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGG < NB501016:282:H2V7GAFX2:3:11508:7754:15834/151‑1 (MQ=60)
ATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGG < NB501016:282:H2V7GAFX2:3:11507:8167:2343/151‑1 (MQ=60)
ATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCAGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGG > NB501016:282:H2V7GAFX2:2:11102:3202:5227/1‑151 (MQ=60)
CGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGT > NB501016:282:H2V7GAFX2:3:21602:10196:16131/1‑151 (MQ=60)
CGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGT < NB501016:282:H2V7GAFX2:1:11209:22311:10896/151‑1 (MQ=60)
CGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGTAGCC > NB501016:282:H2V7GAFX2:2:11211:18777:18597/1‑151 (MQ=60)
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CGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGTAGCC > NC_002947_CJ‑RC/4635277‑4635565
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
