Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F13 I1 R1
|
58 |
75.1 |
3211970 |
98.6% |
3167002 |
146.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
4,635,418 |
A→G |
S149P (TCC→CCC) |
uvrY ← |
BarA/UvrY two‑componenent system response regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 4,635,418 | 0 | A | G | 91.0%
| 233.0
/ 9.3
| 78 | S149P (TCC→CCC) | uvrY | BarA/UvrY two‑componenent system response regulator |
| Reads supporting (aligned to +/- strand): ref base A (4/3); new base G (36/35); total (40/38) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.64e-01 |
TTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGG > NC_002947_CJ‑RC/4635272‑4635560
|
ttCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCa < 4:233741/149‑1 (MQ=255)
aCGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAAcgc < 7:364408/149‑1 (MQ=255)
gTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGt > 6:134773/1‑149 (MQ=255)
cGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTc > 8:56688/1‑148 (MQ=255)
tGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGTGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGga < 5:112988/149‑1 (MQ=255)
cGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGAcc > 1:37519/1‑149 (MQ=255)
gagaGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGAccc > 7:815/1‑149 (MQ=255)
gagaGTTTATCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGAccc < 5:6507/149‑1 (MQ=255)
agagTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGAcccc > 6:20145/1‑149 (MQ=255)
agagTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTCTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGAcccc > 1:355261/1‑149 (MQ=255)
gTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGc > 8:126211/1‑149 (MQ=255)
tttttCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTAGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCg > 2:42746/1‑149 (MQ=255)
tttCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGc > 1:192231/1‑149 (MQ=255)
ttCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCt > 7:277536/1‑149 (MQ=255)
cAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTg > 7:254158/1‑148 (MQ=255)
aaaGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTgg < 7:261769/148‑1 (MQ=255)
aaGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTGCAACGCGTCGAACGGAGACCCCTGCGGCTGGaa < 7:178839/149‑1 (MQ=255)
aTAACGGTAAGTATTGACGGTGTTGGGGGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGGCGACGATCATCAGGGGATTCTGGATTTCCCGTTGGGGCTACGCGTCGAACGGCGACGCCGGCGGCGGGAACGGttg > 6:382214/1‑146 (MQ=255)
aTAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGttt > 8:172829/1‑147 (MQ=255)
aCGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAgc < 5:314567/148‑1 (MQ=255)
ggTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAgcgc > 2:66777/1‑148 (MQ=255)
ggTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGcc < 4:125764/149‑1 (MQ=255)
ttGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAActgctg < 8:388025/149‑1 (MQ=255)
ttGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAActgctg > 2:242723/1‑149 (MQ=255)
gACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTgg < 1:59489/148‑1 (MQ=255)
gACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTgg < 5:293934/148‑1 (MQ=255)
aCGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGc > 6:322422/1‑149 (MQ=255)
ggTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGa > 5:138061/1‑149 (MQ=255)
gggCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGc < 6:333110/148‑1 (MQ=255)
gCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCggg < 2:111264/149‑1 (MQ=255)
cacaACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGTAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGAtata < 5:9874/149‑1 (MQ=255)
cacaACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGAtata < 4:36313/149‑1 (MQ=255)
acaACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAg > 8:265065/1‑149 (MQ=255)
acaACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCATTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAg > 8:223068/1‑149 (MQ=255)
gTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTCATATAGCGCTGGc > 8:312002/1‑149 (MQ=255)
tCGGAGATGATCTGCACTTTCTGGCCGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGc < 2:348041/148‑1 (MQ=255)
tCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGcc > 3:225941/1‑149 (MQ=255)
ggAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCg < 5:355276/148‑1 (MQ=255)
gagaTGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCgg > 2:221655/1‑148 (MQ=255)
tgatCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCaaa < 2:360802/148‑1 (MQ=255)
gCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCt < 8:405292/132‑1 (MQ=255)
gCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCt > 7:405292/1‑132 (MQ=255)
gCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGa > 4:190757/1‑149 (MQ=255)
gCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGc > 8:58790/1‑145 (MQ=255)
gCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGc < 7:58790/145‑1 (MQ=255)
cACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCTGCAAAGGc < 6:138061/144‑1 (MQ=255)
cACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGc < 2:37519/144‑1 (MQ=255)
cACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGAc > 3:47648/1‑149 (MQ=255)
cACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGAc > 2:10953/1‑149 (MQ=255)
tttCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGaa > 8:118372/1‑149 (MQ=255)
tttCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGaa > 1:81900/1‑149 (MQ=255)
tttCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAAATGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGaa > 8:317818/1‑149 (MQ=255)
tttCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGaa > 5:29887/1‑149 (MQ=255)
tCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGaa < 6:23014/147‑1 (MQ=255)
cAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTg < 1:66777/149‑1 (MQ=255)
cAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTg < 7:56688/149‑1 (MQ=255)
gCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGa < 1:246916/149‑1 (MQ=255)
gacgaTCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCa < 1:242723/149‑1 (MQ=255)
cgaTCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCAtt < 8:815/149‑1 (MQ=255)
cgaTCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCAtt < 2:81900/149‑1 (MQ=255)
gaTCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAATGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCAttt > 5:50625/1‑149 (MQ=255)
atcatcAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTc < 2:279055/149‑1 (MQ=255)
tcaGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTc > 7:210764/1‑148 (MQ=255)
tcaGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTc > 8:133768/1‑148 (MQ=255)
tcaGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTc > 3:170109/1‑148 (MQ=255)
aGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAg < 6:320417/149‑1 (MQ=255)
ggCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGc < 8:254158/149‑1 (MQ=255)
cAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCt < 5:20145/149‑1 (MQ=255)
tCTGGATTTCCCGTTTGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCa > 4:373414/1‑149 (MQ=255)
tCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCa > 6:382748/1‑149 (MQ=255)
ggATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGACAAGGCCTGCAccc > 1:136363/1‑149 (MQ=255)
tttCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTg < 1:150693/149‑1 (MQ=255)
cccGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGt < 7:312002/148‑1 (MQ=255)
ccGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGt > 8:189458/1‑147 (MQ=255)
ccGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTc < 7:126211/148‑1 (MQ=255)
cGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAg < 3:314056/149‑1 (MQ=255)
gTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCAGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAgg < 8:277536/149‑1 (MQ=255)
ttCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAgg > 8:286054/1‑148 (MQ=255)
|
TTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGG > NC_002947_CJ‑RC/4635272‑4635560
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGG > NC_002947_CJ‑RC/4635275‑4635560
|
GACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCG < NB501016:282:H2V7GAFX2:4:21604:18580:12428/151‑1 (MQ=60)
GTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGTGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAG < NB501016:282:H2V7GAFX2:3:11509:24512:8717/151‑1 (MQ=60)
CCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCC > NB501016:282:H2V7GAFX2:1:11107:17707:2222/1‑151 (MQ=60)
CGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCC > NB501016:282:H2V7GAFX2:4:11401:10067:3866/1‑151 (MQ=60)
CGAGAGTTTATCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCC < NB501016:282:H2V7GAFX2:3:11402:7720:5096/151‑1 (MQ=60)
GAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTCTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCT > NB501016:282:H2V7GAFX2:1:21303:5893:13870/1‑151 (MQ=60)
TTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCT > NB501016:282:H2V7GAFX2:1:11309:22485:18505/1‑151 (MQ=60)
TTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTG > NB501016:282:H2V7GAFX2:4:21501:18465:6403/1‑151 (MQ=60)
TCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGG > NB501016:282:H2V7GAFX2:4:21409:24975:6052/1‑150 (MQ=60)
CAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGA < NB501016:282:H2V7GAFX2:4:21410:1627:11855/150‑1 (MQ=60)
AAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAAC < NB501016:282:H2V7GAFX2:4:11607:3871:18717/151‑1 (MQ=60)
AACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCG < NB501016:282:H2V7GAFX2:3:21509:14007:13764/150‑1 (MQ=60)
TGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGG < NB501016:282:H2V7GAFX2:3:21505:6030:19487/150‑1 (MQ=60)
TGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGG < NB501016:282:H2V7GAFX2:1:11110:8170:14785/150‑1 (MQ=60)
CGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGAT > NB501016:282:H2V7GAFX2:3:11601:23572:13567/1‑151 (MQ=60)
GCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGTAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAG < NB501016:282:H2V7GAFX2:3:11402:25319:16758/151‑1 (MQ=60)
GTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCG > NB501016:282:H2V7GAFX2:2:21104:9777:19855/1‑151 (MQ=60)
CGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGG < NB501016:282:H2V7GAFX2:3:21604:11757:12668/150‑1 (MQ=60)
TGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTG > NB501016:282:H2V7GAFX2:4:21611:3206:20192/1‑134 (MQ=60)
TGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCC < NB501016:282:H2V7GAFX2:4:11411:9492:2625/147‑1 (MQ=60)
GCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACG > NB501016:282:H2V7GAFX2:2:11109:10843:12375/1‑151 (MQ=60)
CTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAAT > NB501016:282:H2V7GAFX2:1:11202:14801:10078/1‑151 (MQ=60)
CTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAAT > NB501016:282:H2V7GAFX2:3:11406:13611:11181/1‑151 (MQ=60)
GCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGG < NB501016:282:H2V7GAFX2:1:11111:17474:18733/151‑1 (MQ=60)
GCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGG < NB501016:282:H2V7GAFX2:4:11410:10105:15040/151‑1 (MQ=60)
AGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGAC < NB501016:282:H2V7GAFX2:1:21107:17902:12287/151‑1 (MQ=60)
CGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCAT < NB501016:282:H2V7GAFX2:1:21106:25472:16487/151‑1 (MQ=60)
CGATCATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAATGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTC > NB501016:282:H2V7GAFX2:3:11410:4362:10475/1‑151 (MQ=60)
ATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCA > NB501016:282:H2V7GAFX2:2:11306:17000:19897/1‑150 (MQ=60)
ATCAGGGCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCA > NB501016:282:H2V7GAFX2:4:21401:13191:13175/1‑150 (MQ=60)
GCAATCTGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTG < NB501016:282:H2V7GAFX2:3:11404:21864:14498/151‑1 (MQ=60)
TGGATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGACAAGGCCTGCACCCT > NB501016:282:H2V7GAFX2:1:11211:26439:15331/1‑151 (MQ=60)
ATTTCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGG < NB501016:282:H2V7GAFX2:1:11302:22278:5650/151‑1 (MQ=60)
TCCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTC < NB501016:282:H2V7GAFX2:4:21507:16222:7464/150‑1 (MQ=60)
CCCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCA < NB501016:282:H2V7GAFX2:4:11510:1421:11800/150‑1 (MQ=60)
CCGTTCGGGCAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGG < NB501016:282:H2V7GAFX2:2:21211:23146:2220/151‑1 (MQ=60)
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GACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGG > NC_002947_CJ‑RC/4635275‑4635560
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
