Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F25 I1 R1
|
61 |
74.4 |
3161000 |
98.6% |
3116746 |
146.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
4,635,417 |
G→T |
S149Y (TCC→TAC) |
uvrY ← |
BarA/UvrY two‑componenent system response regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 4,635,417 | 0 | G | T | 100.0%
| 187.3
/ NA
| 54 | S149Y (TCC→TAC) | uvrY | BarA/UvrY two‑componenent system response regulator |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (23/31); total (23/31) |
TTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGG > NC_002947_CJ‑RC/4635272‑4635560
|
ttCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTAc > 7:246750/1‑148 (MQ=255)
gACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAAcg > 3:110778/1‑149 (MQ=255)
tctcTGGTTACAGAGAGTTTATCAAAGATCCGATAACTGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTc < 4:277935/146‑1 (MQ=255)
cTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGaa < 4:305797/149‑1 (MQ=255)
gTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAAc < 5:163493/147‑1 (MQ=255)
cGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGAcc > 3:330789/1‑149 (MQ=255)
gagaGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGAccc > 2:358232/1‑149 (MQ=255)
gagTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCt < 6:85908/149‑1 (MQ=255)
gTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGc < 2:39644/149‑1 (MQ=255)
cAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTg < 5:1076/148‑1 (MQ=255)
aaaGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTgg > 8:61843/1‑148 (MQ=255)
aaaGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTgg > 3:51118/1‑148 (MQ=255)
aaGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGaa < 8:124229/149‑1 (MQ=255)
tCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGt < 8:145345/149‑1 (MQ=255)
tCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGt < 4:154722/149‑1 (MQ=255)
tCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGt < 3:228274/149‑1 (MQ=255)
tCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGt < 7:3862/149‑1 (MQ=255)
cGATAACGGTAAGTATTGACTGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGttt < 5:260292/149‑1 (MQ=255)
aGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAAct < 1:73307/149‑1 (MQ=255)
aatGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAGCGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAActgct > 8:387329/3‑149 (MQ=255)
ttGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAActgctg < 6:11122/149‑1 (MQ=255)
ttGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAActgctg > 7:333329/1‑149 (MQ=255)
cGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGc > 8:99813/1‑148 (MQ=255)
gTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGAt < 5:232532/149‑1 (MQ=255)
agagGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCt > 7:407101/1‑148 (MQ=255)
gagGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGa < 5:373076/149‑1 (MQ=255)
gCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGata > 4:272733/1‑148 (MQ=255)
cacaACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGACAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGata > 6:187268/1‑147 (MQ=255)
acaACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAg > 8:54839/1‑149 (MQ=255)
cTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCt < 3:11378/149‑1 (MQ=255)
ggAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCg < 4:330789/148‑1 (MQ=255)
tgatCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAg < 7:184143/149‑1 (MQ=255)
gatCTGCACTTTCTGGAAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGCAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAgg > 8:174541/1‑149 (MQ=255)
cTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGAGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGc > 4:159374/1‑147 (MQ=255)
cACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCa < 1:358232/146‑1 (MQ=255)
cACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGa < 3:318800/148‑1 (MQ=255)
cACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGa < 7:81512/148‑1 (MQ=255)
cTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGa < 4:110778/149‑1 (MQ=255)
gCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCt > 6:366680/1‑149 (MQ=255)
gCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGa < 7:54839/149‑1 (MQ=255)
gCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGa < 4:107142/149‑1 (MQ=255)
cgaTCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCAtt < 2:238949/149‑1 (MQ=255)
atcaGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTc < 3:272733/149‑1 (MQ=255)
gggCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAgg > 2:356434/1‑149 (MQ=255)
ggCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGc > 3:136510/1‑149 (MQ=255)
cAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCt < 8:333329/149‑1 (MQ=255)
cAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTGCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCt < 4:51118/149‑1 (MQ=255)
aaTCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTg > 3:129697/1‑149 (MQ=255)
tGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGa > 1:169410/1‑127 (MQ=255)
tGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGa < 2:169410/127‑1 (MQ=255)
gATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCt > 1:286495/1‑149 (MQ=255)
aTTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCtt < 7:99813/149‑1 (MQ=255)
tttCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTg > 8:254164/1‑149 (MQ=255)
gTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAgg > 4:160514/1‑149 (MQ=255)
|
TTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGG > NC_002947_CJ‑RC/4635272‑4635560
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGTAGCCG > NC_002947_CJ‑RC/4635271‑4635566
|
GTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACA > NB501016:282:H2V7GAFX2:4:21408:10837:9223/1‑150 (MQ=60)
CGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGC > NB501016:282:H2V7GAFX2:2:11209:25692:11993/1‑151 (MQ=60)
GGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACG < NB501016:282:H2V7GAFX2:3:11606:20077:4357/149‑1 (MQ=60)
CCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCACGTTCGTACAACGCGTCGAACGGAGACCC > NB501016:282:H2V7GAFX2:2:21304:9105:6882/1‑151 (MQ=60)
TCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGG < NB501016:282:H2V7GAFX2:3:11401:7816:4798/150‑1 (MQ=60)
CAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGA > NB501016:282:H2V7GAFX2:2:11110:15622:12720/1‑150 (MQ=60)
ATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTT < NB501016:282:H2V7GAFX2:4:11401:20740:13803/151‑1 (MQ=60)
ATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTT < NB501016:282:H2V7GAFX2:2:21106:3954:14929/151‑1 (MQ=60)
CCGATAACGGTAAGTATTGACTGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTC < NB501016:282:H2V7GAFX2:3:21411:26704:17873/151‑1 (MQ=60)
AAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTG < NB501016:282:H2V7GAFX2:1:11201:19077:9655/151‑1 (MQ=60)
ATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGG > NB501016:282:H2V7GAFX2:4:21511:9637:6589/1‑151 (MQ=60)
GGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATC < NB501016:282:H2V7GAFX2:3:21406:12772:13946/151‑1 (MQ=60)
GAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTG > NB501016:282:H2V7GAFX2:4:21612:14159:14544/1‑150 (MQ=60)
AGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGAT < NB501016:282:H2V7GAFX2:3:21608:3628:3578/151‑1 (MQ=60)
ACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTG < NB501016:282:H2V7GAFX2:2:11103:26588:4510/151‑1 (MQ=60)
ATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGG < NB501016:282:H2V7GAFX2:4:11609:17519:10250/151‑1 (MQ=60)
GCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGAC < NB501016:282:H2V7GAFX2:2:21302:17341:1716/150‑1 (MQ=60)
GCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGAC < NB501016:282:H2V7GAFX2:4:11502:9603:17577/150‑1 (MQ=60)
GCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAG < NB501016:282:H2V7GAFX2:1:21306:2189:5968/148‑1 (MQ=60)
AGCCGACTATCATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGAC < NB501016:282:H2V7GAFX2:4:11410:15284:6527/151‑1 (MQ=60)
AATCAGGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCA < NB501016:282:H2V7GAFX2:2:21205:5918:3284/151‑1 (MQ=60)
GGGCAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCC > NB501016:282:H2V7GAFX2:2:11302:4485:4928/1‑151 (MQ=60)
CAATCTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGC > NB501016:282:H2V7GAFX2:2:11212:17203:19806/1‑151 (MQ=60)
CTGGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGAC > NB501016:282:H2V7GAFX2:1:11307:11613:1993/1‑129 (MQ=60)
GGATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTT > NB501016:282:H2V7GAFX2:1:21204:19395:4102/1‑151 (MQ=60)
GATTTCCCGTTCGTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTG < NB501016:282:H2V7GAFX2:4:11506:4014:4315/151‑1 (MQ=60)
CCGTTTGTACAACGCGTCGACCGGAGAGCCCTGCGGCTTCATCGGTTTCAGCGCCAAGTGCTGGGCTTGCTGCGGGCTGATTTAGCGCTGGCCGGCAAAGGCATTACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGG < NB501016:282:H2V7GAFX2:1:11210:3938:15828/151‑1 (MQ=60)
GTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGTAGCCG > NB501016:282:H2V7GAFX2:1:11202:10357:7596/1‑151 (MQ=60)
GTACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGAC < NB501016:282:H2V7GAFX2:1:11103:16629:15365/114‑1 (MQ=60)
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GTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGTAGCCG > NC_002947_CJ‑RC/4635271‑4635566
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
