Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F23 I1 R1 59 87.9 3762788 98.7% 3713871 145.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_002947_CJ‑RC 5,396,064 A→G V231A (GTA→GCA)  tphBII ← 4‑hydroxythreonine‑4‑phosphate dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947_CJ‑RC5,396,0640AG100.0% 308.8 / NA 87V231A (GTA→GCA) tphBII4‑hydroxythreonine‑4‑phosphate dehydrogenase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (47/40);  total (47/40)

CACCCTGCCACCGATAGATAGTGCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTACTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCGAGTAAGGTGCATGTC  >  NC_002947_CJ‑RC/5395919‑5396207
                                                                                                                                                 |                                                                                                                                               
caccCTGCCACCGATAGATAGTGCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTctactgct                                                                                                                                               <  7:446343/148‑1 (MQ=255)
caccCTGCCACCGATAGATAGTGCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTctactgct                                                                                                                                               <  2:211006/148‑1 (MQ=255)
   ccTGCCACCGATAGATAGTGCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAgg                                                                                                                                            >  3:287633/1‑148 (MQ=255)
   ccTGCCACCGATAGATAGTGCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAgg                                                                                                                                            <  1:76568/148‑1 (MQ=255)
    cTGCCACCGATAGATAGTGCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGc                                                                                                                                           >  3:255556/1‑148 (MQ=255)
      gCCACCGATAGATAGTGCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCcg                                                                                                                                         >  7:319690/1‑148 (MQ=255)
         aCCGATAGATAGTGCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCgcgc                                                                                                                                      >  8:285791/1‑148 (MQ=255)
          cccatagaaagTGCGCTGGCTCCGTTAGGTGACAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGAGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCt                                                                                                                                     >  6:269963/4‑148 (MQ=255)
              tagatagTGCGCTGTCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTgcg                                                                                                                                 >  2:469230/1‑148 (MQ=255)
              tagatagTGCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTgcg                                                                                                                                 >  1:39111/1‑148 (MQ=255)
                gatagTGCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCa                                                                                                                               <  5:295251/148‑1 (MQ=255)
                       cgcTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGtct                                                                                                                         <  3:42701/147‑1 (MQ=255)
                       cgcTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGtct                                                                                                                         <  1:423325/147‑1 (MQ=255)
                         cTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGa                                                                                                                      <  5:278228/148‑1 (MQ=255)
                           ggCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACATGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTACCATGGGGACGTGTACTGCTAGGCCGCGCTTGCTCAGTGTCTCGa                                                                                                                      >  4:272188/1‑146 (MQ=255)
                                 gTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCggg                                                                                                               >  7:421228/1‑147 (MQ=255)
                                  ttAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGaa                                                                                                             >  3:126988/1‑148 (MQ=255)
                                   tAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAAc                                                                                                            >  7:243041/1‑148 (MQ=255)
                                       tGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGt                                                                                                         >  8:5025/1‑147 (MQ=255)
                                       tGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTg                                                                                                        <  6:244728/148‑1 (MQ=255)
                                         ccAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGa                                                                                                       <  6:464779/147‑1 (MQ=255)
                                         ccAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGAt                                                                                                      <  8:293950/148‑1 (MQ=255)
                                          cagcagCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTgc                                                                                                                                  <  2:425179/119‑1 (MQ=255)
                                          cagcagCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTgc                                                                                                                                  >  1:425179/1‑119 (MQ=255)
                                          cagcagCTTGATGGGGATATGGCCCTCATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCCCTGTGCCAGAACCATGTCAGCTCCCAAGGGGCCGTCAACTGCTAGGCCCCGCATGCGCACTGTCACGACACCGGGAACGGTGAt                                                                                                      >  3:448100/1‑147 (MQ=255)
                                            gcagcTTGATGGGGATATGGCGCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGGTAGGCCGCGCTTGCGCTGTGTCTCGACAGCGGGAACGGTGTTCTg                                                                                                   <  3:272188/148‑1 (MQ=255)
                                            gcagcTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTg                                                                                                   <  2:320606/148‑1 (MQ=255)
                                            gcagcTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTg                                                                                                   <  6:230270/148‑1 (MQ=255)
                                             cagcTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTgg                                                                                                  >  5:24860/1‑148 (MQ=255)
                                              agcTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTggg                                                                                                 <  5:191861/148‑1 (MQ=255)
                                              agcTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTggg                                                                                                 <  4:189373/148‑1 (MQ=255)
                                              agcTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTggg                                                                                                 <  7:285791/148‑1 (MQ=255)
                                              agcTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTggg                                                                                                 <  1:195948/148‑1 (MQ=255)
                                              agcTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTggg                                                                                                 <  1:134672/148‑1 (MQ=255)
                                                 ttGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGt                                                                                              >  2:273472/1‑148 (MQ=255)
                                                           tatGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGtcctct                                                                                         >  8:117280/1‑142 (MQ=255)
                                                           tatGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGtcctct                                                                                         <  7:117280/143‑2 (MQ=255)
                                                           tatGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCGTCCAGGcc                                                                                    >  8:160930/1‑148 (MQ=255)
                                                             tGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGa                                                                                  <  8:319690/148‑1 (MQ=255)
                                                               gCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGaa                                                                                 <  7:200384/147‑1 (MQ=255)
                                                               gCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCACAACCATGTCACCTCCCATGGGGCCGTCAACAGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAAACGAGAACTGGGACTCCTCCAGGCCGaa                                                                                 >  6:280092/1‑147 (MQ=255)
                                                                cccTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGaaca                                                                               <  3:321754/148‑1 (MQ=255)
                                                                 ccTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGaacaa                                                                              >  1:73171/1‑148 (MQ=255)
                                                                 ccTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGaacaa                                                                              >  4:175191/1‑148 (MQ=255)
                                                                 ccTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGaacaa                                                                              >  8:156232/1‑148 (MQ=255)
                                                                  cTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGaacaa                                                                              >  1:229375/1‑147 (MQ=255)
                                                                   tGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACt                                                                            >  3:148995/1‑148 (MQ=255)
                                                                     aTCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTg                                                                           <  5:237362/147‑1 (MQ=255)
                                                                         tGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCtt                                                                      >  2:330571/1‑148 (MQ=255)
                                                                         tGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCtt                                                                      >  2:429877/1‑148 (MQ=255)
                                                                                      catacaGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGtct                                                                                                                         <  2:445125/84‑1 (MQ=255)
                                                                                      catacaGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGtct                                                                                                                         >  1:445125/1‑84 (MQ=255)
                                                                                      catacaGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAgg                                                         >  8:202558/1‑148 (MQ=255)
                                                                                      catacaGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAg                                                          <  4:287633/147‑1 (MQ=255)
                                                                                      catacaGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTACCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAgg                                                         >  7:423871/1‑148 (MQ=255)
                                                                                        tacaGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGt                                                       >  4:419919/1‑148 (MQ=255)
                                                                                        tacaGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGt                                                       <  4:126988/148‑1 (MQ=255)
                                                                                          caGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGGGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGtt                                                      >  4:276496/1‑147 (MQ=255)
                                                                                           aGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGa                                                    >  5:155408/1‑148 (MQ=255)
                                                                                                 tGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGa                                              <  8:168854/148‑1 (MQ=255)
                                                                                                 tGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGa                                              <  7:156232/148‑1 (MQ=255)
                                                                                                   cTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGt                                                       <  7:26301/137‑1 (MQ=255)
                                                                                                   cTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGt                                                       >  8:26301/1‑137 (MQ=255)
                                                                                                   cTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGaa                                             <  1:469230/147‑1 (MQ=255)
                                                                                                   cTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAAt                                            <  8:325268/148‑1 (MQ=255)
                                                                                                     tGCGCTGTGCCAGAACAATGTCAGCTCACATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATa                                           >  7:145299/1‑147 (MQ=255)
                                                                                                      gcgcTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATAc                                          <  5:269963/147‑1 (MQ=255)
                                                                                                              ccAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACttt                                 <  4:448100/148‑1 (MQ=255)
                                                                                                              ccAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACttt                                 <  4:285785/148‑1 (MQ=255)
                                                                                                               cAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAAAACAGCGACtttt                                >  2:189693/1‑148 (MQ=255)
                                                                                                                 gAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTgg                              >  2:228970/1‑148 (MQ=255)
                                                                                                                    ccATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGttt                           <  3:175191/148‑1 (MQ=255)
                                                                                                                      aTGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAg                         <  7:251474/148‑1 (MQ=255)
                                                                                                                        gTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGGGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAGCTGTGCTTCAGATGCATGAGGGTTGATCGGGCATACAGCGACTTTTGGTTTAGGc                       >  2:251138/1‑148 (MQ=255)
                                                                                                                        gTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAgg                        >  5:151490/1‑147 (MQ=255)
                                                                                                                         tCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCa                      >  1:235650/1‑148 (MQ=255)
                                                                                                                            gCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTc                   <  7:202558/148‑1 (MQ=255)
                                                                                                                            gCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTc                   <  8:421228/148‑1 (MQ=255)
                                                                                                                              tCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTcc                  >  3:302116/1‑147 (MQ=255)
                                                                                                                               cccATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTcc                  >  1:334931/1‑146 (MQ=255)
                                                                                                                               cccATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTcc                  >  4:104676/1‑146 (MQ=255)
                                                                                                                                 cATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCGAg               >  1:307065/1‑147 (MQ=255)
                                                                                                                                 cATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCGAg               >  7:71854/1‑147 (MQ=255)
                                                                                                                                  aTGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCGAGt              >  7:184713/1‑147 (MQ=255)
                                                                                                                                   tGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTTGGCACTCCGAGt              >  4:14252/1‑146 (MQ=255)
                                                                                                                                   tGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCGAGTaa            <  1:273472/148‑1 (MQ=255)
                                                                                                                                     tggCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCTGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAAGTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACTGCGACTTTTGGTTTAGGCACTCCGAGTAAg           <  2:190062/146‑1 (MQ=255)
                                                                                                                                     gggCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCGAGTAAgg          <  6:155408/148‑1 (MQ=255)
                                                                                                                                      ggCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCGAGTAAGGt         >  6:352058/1‑148 (MQ=255)
                                                                                                                                            ctactgctaGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCGAGTAAGGTGCATGt   >  5:11108/1‑148 (MQ=255)
                                                                                                                                             tactgctaGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTgg                              >  4:35864/1‑120 (MQ=255)
                                                                                                                                             tactgctaGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTgg                              <  3:35864/120‑1 (MQ=255)
                                                                                                                                             tactgctaGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCGAGTAAGGTGCATGTc  <  5:280092/148‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                               
CACCCTGCCACCGATAGATAGTGCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTACTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCGAGTAAGGTGCATGTC  >  NC_002947_CJ‑RC/5395919‑5396207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCACCACCCTGCCACCGATAGATAGTGCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTACTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCGAGTAAGGTGCATGTCTGCACGG  >  NC_002947_CJ‑RC/5395915‑5396214
                                                                                                                                                     |                                                                                                                                                      
GCACCACCCTGCCACCGATAGATAGTGCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGC                                                                                                                                                       >  NB501016:282:H2V7GAFX2:2:11305:22132:19268/1‑151 (MQ=60)
   CCACCCTGCCACCGATAGATAGTGCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAG                                                                                                                                                    <  NB501016:282:H2V7GAFX2:4:21607:21320:4251/151‑1 (MQ=60)
     ACCCTGCCACCGATAGATAGTGCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGC                                                                                                                                                  >  NB501016:282:H2V7GAFX2:2:21109:13189:1905/1‑151 (MQ=60)
      CCCTGCCACCGATAGATAGTGCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCC                                                                                                                                                 <  NB501016:282:H2V7GAFX2:1:11111:16025:16543/151‑1 (MQ=60)
      CCCTGCCACCGATAGATAGTGCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCC                                                                                                                                                 >  NB501016:282:H2V7GAFX2:2:21103:19285:16007/1‑151 (MQ=60)
        CTGCCACCGATAGATAGTGCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGC                                                                                                                                               >  NB501016:282:H2V7GAFX2:4:21412:5970:3482/1‑151 (MQ=60)
                GATAGATAGTGCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGC                                                                                                                                       >  NB501016:282:H2V7GAFX2:1:11106:8542:10184/1‑151 (MQ=60)
                   AGATAGTGCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGT                                                                                                                                    <  NB501016:282:H2V7GAFX2:3:21409:8766:14531/151‑1 (MQ=60)
                          GCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCG                                                                                                                              <  NB501016:282:H2V7GAFX2:1:21305:20203:9461/150‑1 (MQ=60)
                          GCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCG                                                                                                                              <  NB501016:282:H2V7GAFX2:2:11107:10333:13757/150‑1 (MQ=60)
                            GCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACA                                                                                                                           <  NB501016:282:H2V7GAFX2:3:21406:24384:19315/151‑1 (MQ=60)
                                   CCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGA                                                                                                                     >  NB501016:282:H2V7GAFX2:4:21603:21748:6053/1‑150 (MQ=60)
                                    CGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAAC                                                                                                                   >  NB501016:282:H2V7GAFX2:2:11208:6299:12473/1‑151 (MQ=60)
                                     GTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACG                                                                                                                  >  NB501016:282:H2V7GAFX2:4:21401:4956:3731/1‑151 (MQ=60)
                                            GCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGC                                                                                                                                       >  NB501016:282:H2V7GAFX2:1:21305:5698:15196/1‑123 (MQ=60)
                                            GCCAGCAGCTTGATGGGGATATGGCCCTCATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCCCTGTGCCAGAACCATGTCAGCTCCCAAGGGGCCGTCAACTGCTAGGCCCCGCATGCGCACTGTCACGACACCGGGAACGGTGATC                                                                                                            >  NB501016:282:H2V7GAFX2:2:21312:14866:4707/1‑150 (MQ=60)
                                               AGCAGCTTGATGGGGATATGGCGCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGGTAGGCCGCGCTTGCGCTGTGTCTCGACAGCGGGAACGGTGTTCTGTG                                                                                                        <  NB501016:282:H2V7GAFX2:2:21106:25819:11523/151‑1 (MQ=60)
                                               AGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGG                                                                                                        >  NB501016:282:H2V7GAFX2:3:11404:6167:17042/1‑151 (MQ=60)
                                                 CAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAG                                                                                                      <  NB501016:282:H2V7GAFX2:4:21407:4612:8271/151‑1 (MQ=60)
                                                 CAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAG                                                                                                      <  NB501016:282:H2V7GAFX2:3:11605:8238:16306/151‑1 (MQ=60)
                                                 CAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAG                                                                                                      <  NB501016:282:H2V7GAFX2:1:11305:15931:16653/151‑1 (MQ=60)
                                                 CAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAG                                                                                                      <  NB501016:282:H2V7GAFX2:1:11208:8174:10885/151‑1 (MQ=60)
                                                             GATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCTAG                                                                                              <  NB501016:282:H2V7GAFX2:4:11505:9732:19493/147‑1 (MQ=60)
                                                                  GGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACA                                                                                      <  NB501016:282:H2V7GAFX2:4:11606:7637:12144/150‑1 (MQ=60)
                                                                   GCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAAC                                                                                    <  NB501016:282:H2V7GAFX2:2:21204:11310:4942/151‑1 (MQ=60)
                                                                   GCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAAC                                                                                    >  NB501016:282:H2V7GAFX2:1:11111:24372:7475/1‑151 (MQ=60)
                                                                    CCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAAC                                                                                    >  NB501016:282:H2V7GAFX2:1:11311:19749:4181/1‑150 (MQ=60)
                                                                     CCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTG                                                                                  >  NB501016:282:H2V7GAFX2:2:11211:15945:18799/1‑151 (MQ=60)
                                                                        GATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTC                                                                                <  NB501016:282:H2V7GAFX2:3:11612:18604:7437/150‑1 (MQ=60)
                                                                                        TACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACAGCTAGGCCGCGCTTGCGCAGTGTCTCG                                                                                                                              >  NB501016:282:H2V7GAFX2:1:21309:9093:1550/1‑88 (MQ=60)
                                                                                        TACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTACCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGG                                                               >  NB501016:282:H2V7GAFX2:4:21603:4647:14169/1‑151 (MQ=60)
                                                                                             ACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGACGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCCAACAACTGTCCTTCAGATGCATGAGGGTTGAT                                                          >  NB501016:282:H2V7GAFX2:3:11512:24173:13198/1‑151 (MQ=60)
                                                                                                    GTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAAT                                                   <  NB501016:282:H2V7GAFX2:4:11511:26011:15685/151‑1 (MQ=60)
                                                                                                     TGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTG                                                            <  NB501016:282:H2V7GAFX2:4:11404:20418:16410/141‑1 (MQ=60)
                                                                                                      GCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATA                                                  <  NB501016:282:H2V7GAFX2:1:21312:12049:17715/150‑1 (MQ=60)
                                                                                                       CTTGCGCTGTGCCAGAACAATGTCAGCTCACATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATAC                                                 >  NB501016:282:H2V7GAFX2:4:11510:12116:3741/1‑150 (MQ=60)
                                                                                                         TGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAG                                               <  NB501016:282:H2V7GAFX2:3:21405:18085:13259/150‑1 (MQ=60)
                                                                                                                       ACCATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAG                                <  NB501016:282:H2V7GAFX2:2:11303:20138:17045/151‑1 (MQ=60)
                                                                                                                         CATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGC                              <  NB501016:282:H2V7GAFX2:4:21402:14135:8572/151‑1 (MQ=60)
                                                                                                                          ATGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGC                              >  NB501016:282:H2V7GAFX2:3:11512:14178:2066/1‑150 (MQ=60)
                                                                                                                           TGTCAGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCAC                            >  NB501016:282:H2V7GAFX2:1:11312:17857:3987/1‑151 (MQ=60)
                                                                                                                               AGCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCG                        <  NB501016:282:H2V7GAFX2:4:11606:2602:18433/151‑1 (MQ=60)
                                                                                                                                GCTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCG                        >  NB501016:282:H2V7GAFX2:2:21111:24886:8974/1‑150 (MQ=60)
                                                                                                                                 CTCCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCG                        >  NB501016:282:H2V7GAFX2:1:21203:9382:1950/1‑149 (MQ=60)
                                                                                                                                   CCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCGAGT                     >  NB501016:282:H2V7GAFX2:4:11411:12493:5927/1‑150 (MQ=60)
                                                                                                                                   CCCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCGAGT                     >  NB501016:282:H2V7GAFX2:1:21110:5668:14770/1‑150 (MQ=60)
                                                                                                                                    CCATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCGAGTA                    >  NB501016:282:H2V7GAFX2:4:11604:12307:3905/1‑150 (MQ=60)
                                                                                                                                      ATGGGGCCGTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCGAGTAAGG                 <  NB501016:282:H2V7GAFX2:1:21105:26043:13549/151‑1 (MQ=60)
                                                                                                                                              GTCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCGAGTAAGGTGCATGTC         >  NB501016:282:H2V7GAFX2:3:11402:18595:14517/1‑151 (MQ=60)
                                                                                                                                               TCTACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTT                                   <  NB501016:282:H2V7GAFX2:2:11106:21719:12651/124‑1 (MQ=60)
                                                                                                                                                ATACTGCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCGAGTAAGGTGCATGTCTG       <  NB501016:282:H2V7GAFX2:3:21407:12126:6046/151‑1 (MQ=60)
                                                                                                                                                     GCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCGAGTAAGGTGCATGTCTGCACGG  >  NB501016:282:H2V7GAFX2:4:11504:19683:14629/1‑151 (MQ=60)
                                                                                                                                                     GCTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCGAGTAAGG                 <  NB501016:282:H2V7GAFX2:1:21309:6815:13619/136‑1 (MQ=60)
                                                                                                                                                     |                                                                                                                                                      
GCACCACCCTGCCACCGATAGATAGTGCGCTGGCTCCGTTAGGTGCCAGCAGCTTGATGGGGATATGGCCCTGATCGTGCAGCATGGCTACATACAGGTCGTGCTTGCGCTGTGCCAGAACCATGTCAGCTCCCATGGGGCCGTCTACTACTAGGCCGCGCTTGCGCAGTGTCTCGACAGCGGGAACGGTGATCTGGGAGTCCTCCAGGCCGAACAACTGTCCTTCAGATGCATGAGGGTTGATCCCGAATACAGCGACTTTTGGTTTAGGCACTCCGAGTAAGGTGCATGTCTGCACGG  >  NC_002947_CJ‑RC/5395915‑5396214

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: