Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F48 I1 R1
|
58 |
71.3 |
3054194 |
98.3% |
3002272 |
146.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
336,125 |
+T |
coding (210/237 nt) |
PP_0278 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 336,124 | 1 | . | T | 96.1%
| 166.2
/ 0.7
| 51 | coding (209/237 nt) | PP_0278 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base T (23/26); total (24/27) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.78e-01 |
ACCCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑A‑T‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATT > NC_002947_CJ‑RC/335980‑336267
|
aCCCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑A‑ttac < 7:126910/149‑4 (MQ=255)
aCCCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑A‑ttac < 8:356068/149‑4 (MQ=255)
tCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCCGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCtgtg < 6:28871/149‑1 (MQ=255)
cccTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGc < 4:153564/149‑1 (MQ=255)
cTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGa < 2:58887/149‑1 (MQ=255)
cTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGa > 8:181315/1‑149 (MQ=255)
cTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGa > 7:207323/1‑149 (MQ=255)
cTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCa < 7:143336/148‑1 (MQ=255)
cTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTAGATCCTGATGGGCTACATCAAGCAACTGGTGCGCGAGGGCGATATGGAGGACGACCATAAAATACTGGGTGCAGCCG‑A‑TAACCTGTGCGACATGGca > 1:144343/1‑146 (MQ=255)
cgcgTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAgg < 7:273944/148‑1 (MQ=255)
cgTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGgcgc < 3:334770/149‑1 (MQ=255)
gTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCAAAGGCGCt > 1:274342/1‑149 (MQ=255)
agagCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCtga > 5:34088/1‑149 (MQ=255)
agagCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCtga > 5:64547/1‑149 (MQ=255)
gagCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCtgat < 3:222369/149‑1 (MQ=255)
cccGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCCAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGAGGaa > 1:336381/1‑149 (MQ=255)
cccGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGaa > 1:325034/1‑149 (MQ=255)
tCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATc < 6:11717/149‑1 (MQ=255)
cccGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATc > 5:23792/1‑147 (MQ=255)
cGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCACCCG‑ATT‑ACCTGTCAGACATGCCCAAGACGCTAATAAACAATATCaag > 4:259556/1‑148 (MQ=255)
cgcgGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGcc > 8:385414/1‑148 (MQ=255)
gcgGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGcc > 4:185399/1‑147 (MQ=255)
cTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCga > 5:375398/1‑135 (MQ=255)
aTGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCAt > 3:23913/1‑149 (MQ=255)
tctcGATCCTGATGGGCTACATCAAGCACCTGGTTCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGTGCATCCT‑ATT‑ACCTGTGCGACATGGCAAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTa < 7:37579/148‑1 (MQ=255)
tctcGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAg > 7:112449/1‑149 (MQ=255)
ctcGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAgg > 3:255210/1‑149 (MQ=255)
ctcGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAgg > 1:121009/1‑149 (MQ=255)
ctcGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAgg > 5:278736/1‑149 (MQ=255)
tcGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAgg > 7:9993/1‑148 (MQ=255)
gATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGc < 5:134163/147‑1 (MQ=255)
gATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCa < 7:385414/148‑1 (MQ=255)
aTCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCAtt > 3:311826/1‑149 (MQ=255)
tGATTGGTTACATCAATCAACTGGTGCGGGAGGGCGATATGGTGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGAc < 3:259556/148‑1 (MQ=255)
tGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGAcg > 7:379402/1‑149 (MQ=255)
cTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGCGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCAt > 1:303860/1‑149 (MQ=255)
cACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGc < 6:215620/149‑1 (MQ=255)
cACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGc < 2:124118/149‑1 (MQ=255)
aCCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCg > 7:297491/1‑149 (MQ=255)
ccTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCGAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCgg < 4:226910/149‑1 (MQ=255)
gcgAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGCCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCGTGCGt < 8:144751/149‑1 (MQ=255)
gCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCGAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGaa < 4:109219/149‑1 (MQ=255)
gCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGaa < 7:181315/149‑1 (MQ=255)
tatGGAGGATGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATgg < 2:332272/148‑1 (MQ=255)
tatGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCAAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATggg < 2:274342/149‑1 (MQ=255)
tGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCt < 2:119236/149‑1 (MQ=255)
gacCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCCAGCGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAagca < 2:373467/149‑1 (MQ=255)
gacCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAagca < 4:23913/149‑1 (MQ=255)
gacCATAAATTCCTGGGGGCAGCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAagca < 8:388436/149‑1 (MQ=255)
gacCAATAATTCCTGCGCCCAGCCGCT‑T‑ACCTGTGCGACATGGCCTAGGCGCTGATGAACTATATCGAGATCGCCTAGGGTAAGGCTCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAagca < 2:365155/149‑1 (MQ=255)
ggggCAGCCT‑ATT‑ACCGGTGCCACAGGCCCACGGCGCTGAGGAACGAAATCGAGATCCCCACGGGTACGGCGCATTAGCCATTGCCGCGGTCATTTGGGGGCGCGGCCTTGCGGCGCTAATGGGCTGCAAAGCAGCCCCGGCGATTTCa < 8:298479/149‑1 (MQ=255)
ggCAGCCT‑ATT‑ACCTGTGCCACATGGCCAAGGCGCTTATCAACGATATCGAGATCGCCAAGGGTAAGGCCCATTAGGCATTGCCGCGGTCATTTGGGGGAGCGGCCTTGCGTCGCTAATGGGCTGAAAAGCCGCCCCGGCGATTTCaga < 8:379402/149‑1 (MQ=255)
gCCG‑ATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGAtt > 1:219461/1‑149 (MQ=255)
|
ACCCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑A‑T‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATT > NC_002947_CJ‑RC/335980‑336267
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AACCCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGA‑T‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTG > NC_002947_CJ‑RC/335979‑336268
|
AACCCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACC < NB501016:282:H2V7GAFX2:4:11511:15740:12943/151‑1 (MQ=60)
CCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGAC > NB501016:282:H2V7GAFX2:4:21402:20691:15262/1‑151 (MQ=60)
CCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAA < NB501016:282:H2V7GAFX2:4:11602:24812:14512/150‑1 (MQ=60)
CCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTAGATCCTGATGGGCTACATCAAGCAACTGGTGCGCGAGGGCGATATGGAGGACGACCATAAAATACTGGGTGCAGCCGA‑TAACCTGTGCGACATGGCAA > NB501016:282:H2V7GAFX2:1:11302:16939:17509/1‑149 (MQ=60)
ACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGC < NB501016:282:H2V7GAFX2:4:21502:1967:12342/150‑1 (MQ=60)
GCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCT < NB501016:282:H2V7GAFX2:2:21306:9623:12165/151‑1 (MQ=60)
CGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTG > NB501016:282:H2V7GAFX2:4:21404:21297:2883/1‑151 (MQ=60)
CGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCAAAGGCGCTG > NB501016:282:H2V7GAFX2:1:21203:3185:10054/1‑151 (MQ=60)
TAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGAT > NB501016:282:H2V7GAFX2:3:11501:3156:14578/1‑151 (MQ=60)
TAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGAT > NB501016:282:H2V7GAFX2:3:11407:5297:14462/1‑151 (MQ=60)
CGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATG < NB501016:282:H2V7GAFX2:2:21106:13875:12110/151‑1 (MQ=60)
GCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCCAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGAGGAAC > NB501016:282:H2V7GAFX2:1:21304:24324:2070/1‑151 (MQ=60)
GCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAAC > NB501016:282:H2V7GAFX2:1:21301:11319:3950/1‑151 (MQ=60)
CGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGAT > NB501016:282:H2V7GAFX2:2:21109:3854:7432/1‑151 (MQ=60)
CCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCG > NB501016:282:H2V7GAFX2:3:11405:23078:13696/1‑149 (MQ=60)
CCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAG > NB501016:282:H2V7GAFX2:3:21611:24912:17031/1‑137 (MQ=60)
CATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATT > NB501016:282:H2V7GAFX2:2:11105:20704:13262/1‑151 (MQ=60)
GTCTCGATCCTGATGGGCTACATCAAGCACCTGGTTCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGTGCATCCTATT‑ACCTGTGCGACATGGCAAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAG < NB501016:282:H2V7GAFX2:4:11407:13990:13542/150‑1 (MQ=60)
GTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGG > NB501016:282:H2V7GAFX2:4:11509:18657:1759/1‑151 (MQ=60)
TCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGC > NB501016:282:H2V7GAFX2:1:11210:8051:11699/1‑151 (MQ=60)
TCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGC > NB501016:282:H2V7GAFX2:3:21505:18033:17768/1‑151 (MQ=60)
TCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGC > NB501016:282:H2V7GAFX2:2:21201:10741:12480/1‑151 (MQ=60)
CTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGC > NB501016:282:H2V7GAFX2:4:11402:3823:16297/1‑150 (MQ=60)
CGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCAT < NB501016:282:H2V7GAFX2:4:21611:9100:7413/150‑1 (MQ=60)
CGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCA < NB501016:282:H2V7GAFX2:3:11602:23132:5932/149‑1 (MQ=60)
CGATCATGATGGTCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGTGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATT < NB501016:282:H2V7GAFX2:1:11209:17494:16559/151‑1 (MQ=60)
GATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTG > NB501016:282:H2V7GAFX2:2:21302:14200:3940/1‑151 (MQ=60)
ttgattggtTACATCAATCAACTGGTGCGGGAGGGCGATATGGTGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACG < NB501016:282:H2V7GAFX2:2:21203:3461:5271/141‑1 (MQ=60)
CTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGC > NB501016:282:H2V7GAFX2:4:21610:3498:4553/1‑151 (MQ=60)
GCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGCGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATT > NB501016:282:H2V7GAFX2:1:21209:6970:3347/1‑151 (MQ=60)
CACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGG > NB501016:282:H2V7GAFX2:4:21506:22083:17166/1‑151 (MQ=60)
GGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAAT < NB501016:282:H2V7GAFX2:4:11609:14435:18841/151‑1 (MQ=60)
ATAAATTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGggggggggggggggggggggggggggggacgacc > NB501016:282:H2V7GAFX2:3:11507:6328:20248/1‑117 (MQ=60)
TTCCTGGGGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGggggggggggggggggggggggggcgggacgccccgcgc > NB501016:282:H2V7GAFX2:1:21206:11612:6399/1‑112 (MQ=60)
GGGCAGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGggggggggggggggcagggggggggggacggccccggcccgggga > NB501016:282:H2V7GAFX2:1:21202:25885:15216/1‑105 (MQ=60)
AGCCGATT‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTG > NB501016:282:H2V7GAFX2:1:21104:24746:19713/1‑151 (MQ=60)
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AACCCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGA‑T‑ACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTG > NC_002947_CJ‑RC/335979‑336268
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
