Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F11 I1 R1
|
56 |
79.5 |
3383150 |
98.4% |
3329019 |
146.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
336,125 |
+T |
coding (210/237 nt) |
PP_0278 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 336,124 | 1 | . | T | 98.1%
| 174.1
/ ‑3.2
| 52 | coding (209/237 nt) | PP_0278 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base T (15/36); total (15/37) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 |
ACCCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGA‑TA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAG > NC_002947_CJ‑RC/335980‑336264
|
aCCCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCTTGTCTCGTTCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATATATTCCTGGGGGCAGCCGA‑ttac < 2:280024/149‑4 (MQ=255)
aCCCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGA‑CATAAATTCCTGGGGGCAGCCGA‑ttac < 4:230320/148‑4 (MQ=255)
cccATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCTACGCGGCCTACGAGCATGTCTAGATCCTGATTGGCTACATCAAGCACCTGGTGCGCGAGGGCGATTTGGAGGACGACCATAAATTCCTGGGGGCAGCCGA‑ttacc < 3:274879/149‑5 (MQ=255)
cATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCtg < 8:392130/149‑1 (MQ=255)
cccTCAATCTCCTACGCGAAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGc < 2:331139/149‑1 (MQ=255)
ccTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGc < 7:361164/148‑1 (MQ=255)
cTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGa > 1:209069/1‑149 (MQ=255)
aTCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATg < 3:410103/149‑1 (MQ=255)
aTCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATg < 4:384944/149‑1 (MQ=255)
tcCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGc > 2:257258/1‑148 (MQ=255)
cTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGTGGGCAGCCGATTA‑CCTGTGCGACATGGc < 8:74906/146‑1 (MQ=255)
cTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGcc > 1:44612/1‑147 (MQ=255)
cTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGc < 5:277639/146‑1 (MQ=255)
tACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAg > 8:263334/1‑149 (MQ=255)
cgcgTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGgc < 6:112598/149‑1 (MQ=255)
gTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCt > 6:286118/1‑149 (MQ=255)
ccGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAAc < 7:113005/149‑1 (MQ=255)
ggCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGa < 7:139695/149‑1 (MQ=255)
tCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATc < 2:385739/149‑1 (MQ=255)
tCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATc < 1:257258/149‑1 (MQ=255)
tCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATGAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATc < 1:210714/149‑1 (MQ=255)
tCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATc < 4:245370/149‑1 (MQ=255)
gcgGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCaa < 1:278300/149‑1 (MQ=255)
ggCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAgg < 1:228439/149‑1 (MQ=255)
cTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGt > 1:228570/1‑148 (MQ=255)
cGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAg < 3:326871/148‑1 (MQ=255)
gAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGgc > 5:122310/1‑149 (MQ=255)
cATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCa > 7:61468/1‑149 (MQ=255)
ctcGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAgg < 6:43493/149‑1 (MQ=255)
tcGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAgg > 7:133306/1‑148 (MQ=255)
aTCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCAtt < 4:41841/149‑1 (MQ=255)
aTCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCAtt > 5:360776/1‑149 (MQ=255)
aTCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCAtt < 6:264765/149‑1 (MQ=255)
tGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGAcg > 7:405971/1‑149 (MQ=255)
cTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCAt < 7:429400/149‑1 (MQ=255)
tCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCAttt > 4:226173/1‑146 (MQ=255)
tCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCAttt < 3:226173/146‑1 (MQ=255)
tCAAGCACCTCGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTtgtg < 4:92904/149‑1 (MQ=255)
aaGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGTCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTgg < 6:292758/148‑1 (MQ=255)
aaGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTgg < 7:263334/148‑1 (MQ=255)
aGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAgg > 7:178536/1‑111 (MQ=255)
aGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAgg < 8:178536/111‑1 (MQ=255)
aGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGa < 6:207148/149‑1 (MQ=255)
gcgAGGGCGATATTGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACCTGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCTTTAGGCATTGAAGCGGTCATTTGTGGGAGCGGCCTTGCGt < 8:236986/149‑1 (MQ=255)
ggCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGa < 5:286118/149‑1 (MQ=255)
tatGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATggg < 6:360776/149‑1 (MQ=255)
tGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGc < 2:271839/148‑1 (MQ=255)
ggaggaCGACCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCt < 4:312248/148‑1 (MQ=255)
gacgacCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATCTCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCaaa < 1:321056/149‑1 (MQ=255)
acgacCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAag < 2:209069/149‑1 (MQ=255)
gacCATAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAag > 1:293091/1‑147 (MQ=255)
tAAATTCCTGGGGGCAGCCGATTA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGcccc > 7:103512/1‑149 (MQ=255)
ggggCACCCTATTA‑CCTGTGCGACATGCCCACGGCGCTGATCAACGATACCGCCATCCCCACGGGTAAGGCGAATTAGCCATTGCCGCGGTCATTTGGGGCAGCGGCCTTGCGGCGCTATTGGGCTGCAAAGCAGCCCCGGCGATTTCa < 8:46273/149‑1 (MQ=255)
ggCAGCCTA‑TTCCCTGGGCGACATGCCCAAGGCGCTGATCAACGATATCCAGACCGCCAAGGGTAAGGCCCATTAGGCATTGACGCGGTCATTTGGGGGCGCGGCCTTGCGCCGCTAATGGGCTGCAAAGCAGCCCCGGCGATTTCaga < 2:293091/149‑1 (MQ=255)
gccgCCGATTA‑CCGGTGCGACATGGCCACGGCGCTCATCAACGAAATCCAGATCGCCACGGGTAAGGCGCATTAGCCATTGACGCGGTCATTTGTGGCAGCGGCCTTGCGCCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCagag < 2:44612/146‑1 (MQ=255)
|
ACCCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGA‑TA‑CCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAG > NC_002947_CJ‑RC/335980‑336264
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACCCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGA‑TACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCT > NC_002947_CJ‑RC/335980‑336272
|
ACCCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCTACGCGGCCTACGAGCATGTCTAGATCCTGATTGGCTACATCAAGCACCTGGTGCGCGAGGGCGATTTGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCT < NB501016:282:H2V7GAFX2:2:21111:24323:14721/151‑1 (MQ=60)
CCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACACCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAAATCCTGGGGGCAGCCGA‑Ttaccagt < NB501016:282:H2V7GAFX2:4:21505:22511:7739/151‑8 (MQ=60)
CCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCG < NB501016:282:H2V7GAFX2:4:21511:16440:20287/150‑1 (MQ=60)
CCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGAC > NB501016:282:H2V7GAFX2:1:11311:2769:13937/1‑151 (MQ=60)
AATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGG < NB501016:282:H2V7GAFX2:2:21312:22427:17384/151‑1 (MQ=60)
TCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCA > NB501016:282:H2V7GAFX2:3:11404:17181:13748/1‑150 (MQ=60)
CCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCA > NB501016:282:H2V7GAFX2:1:11107:5439:20088/1‑149 (MQ=60)
CCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCC < NB501016:282:H2V7GAFX2:3:21412:10747:3136/148‑1 (MQ=60)
CCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACG < NB501016:282:H2V7GAFX2:4:11507:22104:3276/151‑1 (MQ=60)
CGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGAT < NB501016:282:H2V7GAFX2:4:11511:10653:9477/151‑1 (MQ=60)
GTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCG < NB501016:282:H2V7GAFX2:1:21107:25439:12725/151‑1 (MQ=60)
GTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATGAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCG < NB501016:282:H2V7GAFX2:1:11311:5565:19381/151‑1 (MQ=60)
CGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAG < NB501016:282:H2V7GAFX2:1:21111:20362:6059/151‑1 (MQ=60)
CGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGG < NB501016:282:H2V7GAFX2:1:21102:19095:16945/151‑1 (MQ=60)
CCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTA > NB501016:282:H2V7GAFX2:1:21102:10744:17293/1‑150 (MQ=60)
ACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGG < NB501016:282:H2V7GAFX2:2:21210:3246:11475/150‑1 (MQ=60)
CGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCG > NB501016:282:H2V7GAFX2:3:11509:24152:15858/1‑151 (MQ=60)
GCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCAT > NB501016:282:H2V7GAFX2:4:11410:24656:15418/1‑151 (MQ=60)
CTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGC > NB501016:282:H2V7GAFX2:4:11510:3059:8440/1‑150 (MQ=60)
GATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTG > NB501016:282:H2V7GAFX2:3:21602:4309:9636/1‑151 (MQ=60)
CTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGC > NB501016:282:H2V7GAFX2:4:21607:12520:15692/1‑151 (MQ=60)
GCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATT < NB501016:282:H2V7GAFX2:4:21611:18153:16974/151‑1 (MQ=60)
ATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTG < NB501016:282:H2V7GAFX2:2:21102:23624:16458/148‑1 (MQ=60)
CAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGG < NB501016:282:H2V7GAFX2:4:21408:7260:5359/150‑1 (MQ=60)
AAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGG > NB501016:282:H2V7GAFX2:4:11606:22358:2748/1‑113 (MQ=60)
GGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAA < NB501016:282:H2V7GAFX2:3:21501:2103:12760/151‑1 (MQ=60)
TGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGgggggggggggggggggggggg > NB501016:282:H2V7GAFX2:4:21605:6432:15301/1‑129 (MQ=60)
GGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGggggggggggggggtgggggggg > NB501016:282:H2V7GAFX2:4:21508:13717:1988/1‑128 (MQ=60)
GGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATCTCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAG < NB501016:282:H2V7GAFX2:1:21206:9030:11996/151‑1 (MQ=60)
GGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCcggggggataaacgaaaaagggcaaaa > NB501016:282:H2V7GAFX2:4:21401:7696:17732/1‑123 (MQ=60)
CGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGC > NB501016:282:H2V7GAFX2:1:21201:6862:17044/1‑149 (MQ=60)
ACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGGCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGgggggggggggggggggggggggcgggcgtc > NB501016:282:H2V7GAFX2:3:11402:7106:12896/1‑120 (MQ=60)
CCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGgggggggggggggggggggggggggggggaac > NB501016:282:H2V7GAFX2:2:11211:1773:13052/1‑119 (MQ=60)
CCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGgggggggggcggccggcgggggggacaacgcc > NB501016:282:H2V7GAFX2:4:11509:5042:11422/1‑119 (MQ=60)
CATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGgggggggggggggggggggggcggggggggg > NB501016:282:H2V7GAFX2:2:11206:12557:18658/1‑118 (MQ=60)
ATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGggggggggggggggggggggggggggggggggggggg > NB501016:282:H2V7GAFX2:1:11310:3580:15188/1‑114 (MQ=60)
ATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCG > NB501016:282:H2V7GAFX2:4:11505:11233:12131/1‑151 (MQ=60)
TGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGggggggggggggggggggggggggggggtggggggggcgcggcggg > NB501016:282:H2V7GAFX2:2:11105:16364:6877/1‑105 (MQ=60)
CAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGggggggggggggcgggggggggggaaaagcccccccccgtaatgtgatt > NB501016:282:H2V7GAFX2:4:21502:19360:13075/1‑102 (MQ=60)
CGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGggggggggggggggggggggggggggggggggggcgggacggggcccgagcagg > NB501016:282:H2V7GAFX2:1:21311:8857:7666/1‑95 (MQ=60)
gatTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGgggggggggggggcggggggggcggacaccaccccccccagagggagttatatg > NB501016:282:H2V7GAFX2:4:21610:2025:4400/4‑97 (MQ=60)
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ACCCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGA‑TACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCT > NC_002947_CJ‑RC/335980‑336272
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
