Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
52 |
69.5 |
2964196 |
98.4% |
2916768 |
145.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
336,125 |
+T |
coding (210/237 nt) |
PP_0278 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 336,124 | 1 | . | T | 98.0%
| 164.6
/ ‑3.5
| 49 | coding (209/237 nt) | PP_0278 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base T (19/29); total (20/29) |
| Fisher's exact test for biased strand distribution p-value = 4.08e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTTAACCCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑A‑TACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATT > NC_002947_CJ‑RC/335976‑336267
|
gTTAACCCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑a > 8:322304/1‑149 (MQ=255)
gTTAACCCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑a < 3:186652/149‑1 (MQ=255)
ccATCCCTCAATCTCCTACGCGTAGAGACCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑A‑ttacct > 5:186908/1‑144 (MQ=255)
cATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCtg < 1:50501/149‑1 (MQ=255)
aTCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCtgt < 8:107993/149‑1 (MQ=255)
ccTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGc > 8:210890/1‑148 (MQ=255)
ccTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGc > 3:292293/1‑148 (MQ=255)
cAAACTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCAACGACCATGTCTCGATCCTGATGGGCAACATCAAGCACCTCCTCCGCGAGGGCGATATGGAGGACGACCATAAATACCTCGGGGCAGCCGAA‑AACCTGTGCGACa > 7:310646/1‑149 (MQ=255)
tcCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGc > 5:349516/1‑148 (MQ=255)
gTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCt > 8:208231/1‑149 (MQ=255)
gTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCt > 1:283152/1‑149 (MQ=255)
tAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCtg < 1:303175/149‑1 (MQ=255)
gagGCCGGCGTCCCCGTCGACGCGGCCTACTAGCATGTCTCGTTCCTGATTGGCTACATCAAGCACCTGGTGCGCGTTGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGTCATGGCCAAGGCGCtga < 8:310646/148‑1 (MQ=255)
cccGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGaa > 7:286398/1‑149 (MQ=255)
cccGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGaa < 4:257771/149‑1 (MQ=255)
ccGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAAc < 2:326721/149‑1 (MQ=255)
ccGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAAc < 4:304785/149‑1 (MQ=255)
cGTCCCCGTCGACGCGGCCTACGTGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCATCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGata < 4:166767/149‑1 (MQ=255)
cccGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCga < 7:322304/149‑1 (MQ=255)
ccGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCgag < 7:347993/149‑1 (MQ=255)
tACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGt > 7:239104/1‑147 (MQ=255)
aCGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGt > 3:305742/1‑146 (MQ=255)
aCGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGt < 4:305742/146‑1 (MQ=255)
cGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAgg < 7:203128/149‑1 (MQ=255)
tcGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAgg > 7:97009/1‑148 (MQ=255)
gATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCaa < 7:320500/129‑1 (MQ=255)
gATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCaa > 8:320500/1‑129 (MQ=255)
gATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAgg < 4:280132/146‑1 (MQ=255)
gATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCa < 6:186908/148‑1 (MQ=255)
gATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCAt < 2:204683/149‑1 (MQ=255)
aTCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGGTAAGGCGCATTAGGCAt > 6:294675/1‑149 (MQ=255)
cTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGa < 7:378206/148‑1 (MQ=255)
cTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGAc < 8:70096/149‑1 (MQ=255)
aTCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTtgt < 7:210890/149‑1 (MQ=255)
aaGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCaa < 4:177662/110‑1 (MQ=255)
aaGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCaa > 3:177662/1‑110 (MQ=255)
aaGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTgg > 4:61099/1‑148 (MQ=255)
aaGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTCTggg > 1:358400/1‑149 (MQ=255)
aGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGa < 2:335178/149‑1 (MQ=255)
cTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGc < 1:287821/149‑1 (MQ=255)
cgcgAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTg < 5:294675/148‑1 (MQ=255)
gcgAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGt > 1:106629/1‑149 (MQ=255)
atatGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATgg < 8:239104/149‑1 (MQ=255)
tatGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATggg > 5:131486/1‑149 (MQ=255)
tatGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATggg < 3:61099/149‑1 (MQ=255)
tGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCt > 7:96916/1‑149 (MQ=255)
aggaCGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCa < 7:208231/149‑1 (MQ=255)
gacCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAagca < 4:187738/149‑1 (MQ=255)
ccATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAagcagc > 1:177752/1‑149 (MQ=255)
cATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGcc < 6:349178/149‑1 (MQ=255)
aTAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCAGCCTTGCGTCGCGAATGGGCTGCAAAGCAGccc > 2:16703/1‑149 (MQ=255)
gCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTTATTAACTATATCGAGATCGCCAA‑GGGTAAGGCGAATTAGGCATTGACGCGGTAATTTGTGGGAGCGGCCTTGCGTCGCTAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGAtt < 8:96916/149‑1 (MQ=38)
|
GTTAACCCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑A‑TACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATT > NC_002947_CJ‑RC/335976‑336267
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGTTAACCCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑A‑TACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAA > NC_002947_CJ‑RC/335975‑336275
|
CGTTAACCCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑A‑T < NB501016:282:H2V7GAFX2:2:11312:2698:14825/151‑1 (MQ=60)
CCCATCCCTCAATCTCCTACGCGTAGAGACCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTG > NB501016:282:H2V7GAFX2:3:11612:22922:10626/1‑151 (MQ=60)
CCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGT < NB501016:282:H2V7GAFX2:1:11110:18640:4829/151‑1 (MQ=60)
CCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCG > NB501016:282:H2V7GAFX2:2:21211:24634:16748/1‑150 (MQ=60)
acaaaCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCAACGACCATGTCTCGATCCTGATGGGCAACATCAAGCACCTCCTCCGCGAGGGCGATATGGAGGACGACCATAAATACCTCGGGGCAGCCGAA‑AACCTGTGCGACAT > NB501016:282:H2V7GAFX2:4:21510:19988:12285/6‑151 (MQ=60)
CTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCC > NB501016:282:H2V7GAFX2:3:21608:21277:13381/1‑150 (MQ=60)
CGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTG > NB501016:282:H2V7GAFX2:1:21207:8703:6450/1‑151 (MQ=60)
GTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGA < NB501016:282:H2V7GAFX2:1:21211:5268:5332/151‑1 (MQ=60)
GCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAAC > NB501016:282:H2V7GAFX2:4:21506:17945:2150/1‑151 (MQ=60)
CCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAG < NB501016:282:H2V7GAFX2:4:21512:20643:14383/151‑1 (MQ=60)
CCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGA < NB501016:282:H2V7GAFX2:4:21605:14473:15961/151‑1 (MQ=60)
CTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTA > NB501016:282:H2V7GAFX2:4:21409:25386:8144/1‑149 (MQ=60)
TACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTA > NB501016:282:H2V7GAFX2:2:21302:19691:18335/1‑148 (MQ=60)
ACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGC < NB501016:282:H2V7GAFX2:4:21402:19041:17976/151‑1 (MQ=60)
CTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGC > NB501016:282:H2V7GAFX2:4:11506:5550:12873/1‑150 (MQ=60)
CGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑G < NB501016:282:H2V7GAFX2:4:21512:20731:8063/131‑1 (MQ=60)
CCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGAC < NB501016:282:H2V7GAFX2:4:21611:8274:14923/150‑1 (MQ=60)
ATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGT > NB501016:282:H2V7GAFX2:1:11311:7101:18295/1‑151 (MQ=60)
CATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTG < NB501016:282:H2V7GAFX2:4:21404:3622:6791/151‑1 (MQ=60)
CAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTCTGGGC > NB501016:282:H2V7GAFX2:1:21311:11759:5440/1‑151 (MQ=60)
CAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑G > NB501016:282:H2V7GAFX2:2:11311:22362:2259/1‑112 (MQ=60)
CACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGG > NB501016:282:H2V7GAFX2:4:11610:2771:18856/1‑151 (MQ=60)
CCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCC < NB501016:282:H2V7GAFX2:1:21208:14008:5559/151‑1 (MQ=60)
GCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGC < NB501016:282:H2V7GAFX2:3:21510:6262:7931/150‑1 (MQ=60)
CGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTC > NB501016:282:H2V7GAFX2:1:11208:2023:16802/1‑151 (MQ=60)
CGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGgggggggggtg > NB501016:282:H2V7GAFX2:4:21401:6014:11649/1‑140 (MQ=60)
CGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGggggggggggg > NB501016:282:H2V7GAFX2:4:21509:22817:9917/1‑140 (MQ=60)
AGGGCGATAGGGAGGACGACCATATATTCCTTGGTGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCGGATGAACGATATCGAGATCGCCAA‑GGGTATGGCTCATTATGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGA < NB501016:282:H2V7GAFX2:1:11108:18486:3420/151‑1 (MQ=60)
ATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGC < NB501016:282:H2V7GAFX2:2:11201:15158:3232/151‑1 (MQ=60)
ATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGC > NB501016:282:H2V7GAFX2:3:11602:22836:6564/1‑151 (MQ=60)
ATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTG > NB501016:282:H2V7GAFX2:4:11506:6892:12463/1‑151 (MQ=60)
GAGGACGACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAA < NB501016:282:H2V7GAFX2:4:21403:20161:16620/151‑1 (MQ=60)
ACCATAAATTCCTGGGGGCAGCCG‑ATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCC > NB501016:282:H2V7GAFX2:1:11310:21410:18719/1‑151 (MQ=60)
gatTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGgggggggggggggggggggggggggggggggggcaagggccccgcagcggggggggg > NB501016:282:H2V7GAFX2:1:11306:21026:13564/4‑94 (MQ=60)
AACCTGTGCAACATGGCCACGGCGCTGATGAACTATATCGATAGCGCCAA‑GGGTACGGCGAATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCTAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAA < NB501016:282:H2V7GAFX2:3:11506:16652:18664/151‑1 (MQ=60)
|
CGTTAACCCATCCCTCAATCTCCTACGCGTAGAGCCCGGCGTCCCCGTCGACGCGGCCTACGAGCATGTCTCGATCCTGATGGGCTACATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCG‑A‑TACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAA‑GGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAA > NC_002947_CJ‑RC/335975‑336275
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
