Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F11 I1 R1
|
56 |
91.5 |
3907174 |
98.4% |
3844659 |
146.2 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GT‑‑G‑‑A‑‑T‑‑CGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGCGAGCAC > NC_002947_CJ‑RC/1070101‑1070398
|
GACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GT‑‑G‑‑A‑‑G < NB501016:282:H2V7GAFX2:4:11502:23832:16210/149‑1 (MQ=60)
ATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GTGAG‑‑A‑‑T‑‑CGAGCGCCGCGCGGGG > NB501016:282:H2V7GAFX2:3:21610:25844:16501/1‑151 (MQ=60)
AATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGGGGCTTTCAAGCGGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GTGAG‑‑A‑‑T‑‑CGAGCGCCGCGCGGGCGGCGCTCG < NB501016:282:H2V7GAFX2:4:21409:12878:12676/151‑1 (MQ=60)
GATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GTGAG‑‑A‑‑T‑‑CGAGCGCCGCG < NB501016:282:H2V7GAFX2:4:11412:2220:14839/132‑1 (MQ=60)
GCTGTGGGTGGCTTCCAAGCTGAAGAAGGCGCGCCAGGCCAAGGGGTGATCGGGTTTGTCCGAAAGGGGTAGGCCGTTAGGTTTTCGGCGCCG‑‑GT‑‑G‑‑A‑‑TAGCGCGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGG < NB501016:282:H2V7GAFX2:1:11109:2826:11823/151‑1 (MQ=60)
GGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GTGAG‑‑A‑‑T‑‑AGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGC > NB501016:282:H2V7GAFX2:3:21506:6032:1632/1‑151 (MQ=60)
GGTGGCTTTCAAGCTGACGAAGGCCCGCCCGGCCAAGGGCGCATCGGGTTTGTCCGTACGGGGAATGCCGTTAGGTTTTCGGCGCCTCGGC‑‑C‑‑A‑‑T‑‑CGCGCGCCGCGCGGGCGGCGCCCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCG < NB501016:282:H2V7GAFX2:1:11109:20501:18958/151‑1 (MQ=60)
TTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GTGAG‑‑A‑‑T‑‑CGAGCGCCGCGCGGGCGGCGCTCGA < NB501016:282:H2V7GAFX2:3:11504:12462:1621/113‑1 (MQ=60)
ccaagggcAAGAAGGCCCGCCAGGCCACGGGCTGAGCGGGTTTGTTCGTCCGGGGTTTCCCGTTCGGTTTCCGGCGCCT‑‑GTGCG‑‑A‑‑G‑‑CGCGCGCCGCGCGGGCGGCGCCCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCG < NB501016:282:H2V7GAFX2:1:11108:9613:4320/142‑1 (MQ=60)
AAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTGCGTAAGGGGTATCCCGTTAGGTTTTCGGCGCCT‑‑GT‑‑GACA‑‑C‑‑CGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGT < NB501016:282:H2V7GAFX2:1:21207:10770:12980/151‑1 (MQ=60)
CGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GTGAG‑‑A‑‑T‑‑CGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTG < NB501016:282:H2V7GAFX2:3:11608:11982:1994/151‑1 (MQ=60)
TAAGGGGAATGCCGTTTGGTTTTCGGCGCCT‑‑GTTAC‑‑A‑‑T‑‑CGAGCCCGGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAG < NB501016:282:H2V7GAFX2:3:21406:2829:4455/150‑1 (MQ=60)
GGGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GG‑‑G‑‑AGTT‑‑CGAGCGCGGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACG < NB501016:282:H2V7GAFX2:4:11401:3741:18645/151‑1 (MQ=60)
GGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GTGAG‑‑A‑‑T‑‑CGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGC < NB501016:282:H2V7GAFX2:3:11607:18615:18531/151‑1 (MQ=60)
CGGTTAGGTTTTCGGCGCCT‑‑GT‑‑G‑‑AGCG‑‑CGCGCGCCGCGCGGGCGGCGCGCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGG < NB501016:282:H2V7GAFX2:4:21604:19115:13612/151‑1 (MQ=60)
CCGTTAGGTTTTCGGCGCCT‑‑GTGAG‑‑A‑‑T‑‑CGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGG < NB501016:282:H2V7GAFX2:4:11611:6898:9693/151‑1 (MQ=60)
GTTAGGTTTTCGGCGCCT‑‑GTGAG‑‑A‑‑T‑‑CGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTG < NB501016:282:H2V7GAFX2:3:21512:4495:15945/151‑1 (MQ=60)
AGGTTTTCGGCGCCT‑‑GTGAG‑‑A‑‑G‑‑CGAGCGCGGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTA < NB501016:282:H2V7GAFX2:4:21605:21685:19204/150‑1 (MQ=60)
GGTTTTCGGCGCCT‑‑GTGAG‑‑A‑‑T‑‑CGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACA < NB501016:282:H2V7GAFX2:3:11506:12441:15575/151‑1 (MQ=60)
CGGCGCCT‑‑GTGAG‑‑A‑‑T‑‑CGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAAC < NB501016:282:H2V7GAFX2:4:21503:25411:8103/150‑1 (MQ=60)
gtgaG‑‑A‑‑T‑‑CGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGCG < NB501016:282:H2V7GAFX2:3:11603:1799:7528/147‑1 (MQ=60)
A‑‑T‑‑CGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGCGAGCAC > NB501016:282:H2V7GAFX2:3:21612:23652:7128/1‑151 (MQ=60)
|
GACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GT‑‑G‑‑A‑‑T‑‑CGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGCGAGCAC > NC_002947_CJ‑RC/1070101‑1070398
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
