Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F43 I1 R1
|
60 |
76.0 |
3234326 |
98.3% |
3179342 |
146.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
1,070,248 |
+GA |
intergenic (+48/+94) |
aroP‑I → / ← PP_0928 |
aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 1,070,246 | 1 | . | G | 81.8%
| 72.3
/ 15.1
| 35 | intergenic (+46/+96) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (1/5); new base G (6/21); total (8/27) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.14e-01 |
| * | NC_002947_CJ‑RC | 1,070,246 | 2 | . | A | 82.3%
| 65.8
/ 15.5
| 35 | intergenic (+46/+96) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (1/5); new base A (7/21); total (8/27) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.77e-01 |
CCTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GT‑‑G‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTAC > NC_002947_CJ‑RC/1070098‑1070378
||
ccTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑t‑‑gt < 5:26135/149‑1 (MQ=255)
ccTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑t‑‑gt < 4:189630/149‑1 (MQ=255)
cTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑a‑‑gt > 2:292212/1‑148 (MQ=255)
tGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑t‑‑gt > 2:238599/1‑147 (MQ=255)
aCGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GT‑‑G‑‑a < 7:112223/147‑1 (MQ=255)
gccgccGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GT‑‑G‑‑agatc < 7:176360/149‑5 (MQ=255)
gccgATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑t‑‑gt < 1:338610/140‑1 (MQ=255)
gccgATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑t‑‑gt > 2:338610/1‑140 (MQ=255)
cATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCcgcgcg < 7:304792/149‑1 (MQ=255)
tCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATAGAGCCCCGCCCGGGCGGGGCTCGaagtca > 2:29025/1‑144 (MQ=255)
ccGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCCCGCGCGGCGCTCGATCTcaca < 7:82307/149‑1 (MQ=38)
cGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCGCGGTCTCCCAg > 6:204858/1‑149 (MQ=38)
aTCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGa > 6:270968/1‑148 (MQ=255)
tCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTGCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGaaa < 5:168978/149‑1 (MQ=255)
cggtgtgctgggGGTGGCTTTCAAGCTGACGACGGCGGGCCTGGCAATGGGCTTTTCGGGTTTGTTCTTACGGGGTCGGCCGTTTGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑AGCGTGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGaaa < 2:355883/145‑1 (MQ=16)
ctgtgGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCCAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAg > 6:183333/1‑149 (MQ=255)
ctgtgGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GT‑‑GACATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAg < 7:138817/149‑1 (MQ=255)
gtgggtggCTTTCTCGCTGAAGATGGCTCGCCAGTCCTAGTGCTGATCGGGTTTGTTCGTATGGGGTATGCCGTGAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGCGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGc < 6:121856/149‑1 (MQ=25)
gtgggtggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGggcggc < 2:344255/116‑1 (MQ=255)
gtgggtggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGggcggc > 1:344255/1‑116 (MQ=255)
tgggtggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCTCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAgg < 1:32577/147‑1 (MQ=255)
cacgCTTAAGACGGCTCGCCAGGCCAAGGGCTGAGCGGGTTTGTTCTTATGGGGTATGCCTTTTGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTggc < 4:137324/145‑1 (MQ=25)
gCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGcc < 5:270968/149‑1 (MQ=255)
cttaagaagGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGTTATGCCGTTAGGTTTTCGCCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGccc < 6:207106/146‑1 (MQ=38)
gaagGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGAcg > 6:388600/1‑149 (MQ=255)
gCCAGGCCAAGGGCTGTTCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTcccc < 2:384892/149‑1 (MQ=255)
gCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTcccc < 5:388600/149‑1 (MQ=255)
ccAGGCAACGGGGTGATCGGGTTTGTGCGTACGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑G‑‑GTCCG‑‑ACCGAGCGCCGCGCGGGCGGCGCCCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCt < 1:29025/149‑1 (MQ=37)
ccAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCAGT‑‑GA‑‑G‑‑ATCGAGCGCCCCGCGGGCGGCGCGCGCTCTCACAGGCGATGAAACCCAAAAGGCATGCGTCTGGCGGCCCAGACGCGGTCCCCGTCCAt > 2:45177/1‑149 (MQ=255)
atcgggCTGATGGGGTTTGTTCTTTTGGGTATTGCCTTTTGGTTTGGGGGGCG‑‑T‑‑GT‑‑GACAGCGCGCGCGGGGGGGGGGGCGCTGCATCTCACTGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATg < 1:344692/146‑1 (MQ=255)
aTCGGGTTTGTTCGTAAGGGGTATGCCGTAAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAt < 4:136801/149‑1 (MQ=255)
tCGGGTGTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑AGCGCGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtg < 1:41859/149‑1 (MQ=38)
gggTTTGTGCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtgct < 1:136435/149‑1 (MQ=255)
tttGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑A‑‑GTTAG‑‑ATAGCGCGCCGCCCGGGCGGGGCTCGCACTCACAGGGGCAGGAAACCTAAAGGCAAGCGTGAGGCGGCCCGGACCCGGTCCCCTTGCAATGCCCACAAagctggc > 2:291920/1‑147 (MQ=255)
gTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGGGA‑‑G‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTc < 4:92413/148‑1 (MQ=255)
aaaGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCaa < 2:116254/148‑1 (MQ=255)
aGGGGTATGCGGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGACGGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgc < 5:129288/149‑1 (MQ=38)
ttAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgtggt < 4:303865/149‑1 (MQ=255)
tAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGCGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgtggt < 7:266448/148‑1 (MQ=255)
gTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTAc < 4:226200/149‑1 (MQ=255)
gTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTAc < 1:45177/149‑1 (MQ=255)
||
CCTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GT‑‑G‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTAC > NC_002947_CJ‑RC/1070098‑1070378
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑G‑‑ATCGA‑‑‑‑‑‑GCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACA > NC_002947_CJ‑RC/1070101‑1070379
|
GACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑G‑‑AG < NB501016:282:H2V7GAFX2:4:11507:17142:18348/149‑1 (MQ=60)
CGCCGCCGATTCGCATCTCGGTACTGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑G‑‑Agatcg < NB501016:282:H2V7GAFX2:4:11607:25833:1903/151‑6 (MQ=60)
GCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGA‑‑‑‑‑‑GCGCCGCGCGG < NB501016:282:H2V7GAFX2:4:21505:24876:3727/151‑1 (MQ=60)
CCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGA‑‑‑‑‑‑GCGCCGCCCGCGCGGCGCTCGATCTCACAG < NB501016:282:H2V7GAFX2:4:11502:16538:17365/151‑1 (MQ=60)
ATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGACGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGA‑‑‑‑‑‑GCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAG < NB501016:282:H2V7GAFX2:3:11605:26678:15494/151‑1 (MQ=60)
ATCGCTGTGCTGTGGGGGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTGCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGA‑‑‑‑‑‑GCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAG < NB501016:282:H2V7GAFX2:3:11606:1205:15501/151‑1 (MQ=60)
GCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATAGA‑‑‑‑‑‑GCGCCCCGCGGGCGGCGCTCGAACTCACAGGCGATGAAAACCGAAAGG > NB501016:282:H2V7GAFX2:3:21606:23658:10078/1‑151 (MQ=60)
GCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑GACATCGA‑‑‑‑‑‑GCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGG < NB501016:282:H2V7GAFX2:4:11512:5399:7879/151‑1 (MQ=60)
TGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGA‑‑‑‑‑‑GCGCCGCGCGGGCGGCG > NB501016:282:H2V7GAFX2:1:21301:7248:8047/1‑118 (MQ=60)
GTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGA‑‑‑‑‑‑GCGCCTCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGC < NB501016:282:H2V7GAFX2:1:11106:9887:6038/149‑1 (MQ=60)
AGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGA‑‑‑‑‑‑GCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCC < NB501016:282:H2V7GAFX2:3:21501:12936:13608/151‑1 (MQ=60)
AAGATGGCGCGCCAGGCAAAGGGCGGACCGGGTGTGTGCGTAAGGGGTATGCCGTATGGTTTTCGGCGC‑‑‑‑‑‑G‑‑GTGGAGACCCCGCGCCGCGCGGGCGGCGCGCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACG < NB501016:282:H2V7GAFX2:4:21504:7607:5419/151‑1 (MQ=60)
CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTACGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGA‑‑‑‑‑‑GCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCT < NB501016:282:H2V7GAFX2:3:21610:15912:10017/151‑1 (MQ=60)
gcctggaatagggggGATCGGGTTTGTTCGTATGGGGAAGGCCGTTAGTTTTTGGGCGCCTGTGCG‑‑ATCGC‑‑‑‑‑‑GCGCCGGGGGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTT < NB501016:282:H2V7GAFX2:4:21512:20277:1261/136‑1 (MQ=60)
GCCAGGCAACGGGGTGATCGGGTTTGTGCGTACGGGGTATGCCGTTAGGTTTTCGGCGCCGGTCCG‑‑ACCGA‑‑‑‑‑‑GCGCCGCGCGGGCGGCGCCCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTT < NB501016:282:H2V7GAFX2:1:11105:6771:13775/151‑1 (MQ=60)
ATCGGGTGTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑AGCGC‑‑‑‑‑‑GCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGC < NB501016:282:H2V7GAFX2:1:11107:15371:15988/151‑1 (MQ=60)
GGGGTTTGTGCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGA‑‑‑‑‑‑GCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTG < NB501016:282:H2V7GAFX2:1:11211:8089:18901/151‑1 (MQ=60)
AAGGGGTATGCGGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGA‑‑‑‑‑‑CGGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCA < NB501016:282:H2V7GAFX2:3:11512:8000:3087/151‑1 (MQ=60)
TTAGGTTTTCGGCGCCTGTGAG‑‑ATCGC‑‑‑‑‑‑GCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTG < NB501016:282:H2V7GAFX2:4:21410:17374:13374/150‑1 (MQ=60)
GGTTTTCGGCGCCTGTGAG‑‑ATCGA‑‑‑‑‑‑GCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACA < NB501016:282:H2V7GAFX2:1:11108:11898:7242/151‑1 (MQ=60)
|
GACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑G‑‑ATCGA‑‑‑‑‑‑GCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACA > NC_002947_CJ‑RC/1070101‑1070379
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
