Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A14 F35 I1 R1
|
74 |
857.2 |
37938082 |
99.4% |
37710453 |
136.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
AE015451_phaM1 |
3,556,355 |
Δ14,665 bp |
|
[PP_3140 CDS (Glycosyl transferase_ group 2 family protein)]–[yneJ CDS (putative DNA‑binding transcriptional regulator_ LysR‑type)] |
[PP_3140 CDS (Glycosyl transferase_ group 2 family protein)], PP_3141 CDS (Glycosyl transferase_ WecB_TagA_CpsF family), PP_3142 CDS (putative Sugar transferase), PP_3143 CDS (Transcriptional regulator_ LysR family), tdcG‑III CDS (L‑serine dehydratase), PP_3145 CDS (conserved protein of unknown function), PP_3146 CDS (putative Oxidoreductase), potF‑II CDS (putrescine‑binding periplasmic protein), PP_3148 CDS (putative Glutamine synthetase), PP_3149 CDS (Transcriptional regulator_ AraC family), PP_3150 CDS (conserved protein of unknown function), sad‑II CDS (NAD+‑dependent succinate semialdehyde dehydrogenase), [yneJ CDS (putative DNA‑binding transcriptional regulator_ LysR‑type)] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
AE015451_phaM1 |
3556355 |
3571019 |
14665 |
683 [0] |
[0] 692 |
[PP_3140 CDS (Glycosyl transferase_ group 2 family protein)]–[yneJ CDS (putative DNA‑binding transcriptional regulator_ LysR‑type)] |
[PP_3140 CDS (Glycosyl transferase_ group 2 family protein)],PP_3141 CDS (Glycosyl transferase_ WecB_TagA_CpsF family),PP_3142 CDS (putative Sugar transferase),PP_3143 CDS (Transcriptional regulator_ LysR family),tdcG‑III CDS (L‑serine dehydratase),PP_3145 CDS (conserved protein of unknown function),PP_3146 CDS (putative Oxidoreductase),potF‑II CDS (putrescine‑binding periplasmic protein),PP_3148 CDS (putative Glutamine synthetase),PP_3149 CDS (Transcriptional regulator_ AraC family),PP_3150 CDS (conserved protein of unknown function),sad‑II CDS (NAD+‑dependent succinate semialdehyde dehydrogenase),[yneJ CDS (putative DNA‑binding transcriptional regulator_ LysR‑type)] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
AE015451_phaM1 |
= 3556354 | 0 (0.000) | 646 (0.800) |
121/254 |
0.2 |
100% |
coding (771/1188 nt) |
PP_3140 CDS (Glycosyl transferase_ group 2 family protein) |
|
| ? | AE015451_phaM1 |
3571020 = |
0 (0.000) | coding (49/867 nt) |
yneJ CDS (putative DNA‑binding transcriptional regulator_ LysR‑type) |
|
GATK/CNVnator alignment
N/A
