Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F84 I10 R1 267 426.1 13521957 97.0% 13116298 150.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,325,837 C→T intergenic (‑96/+562) yjdN ← / ← yjdM metalloprotein superfamily protein/zinc‑ribbon family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,325,8370CT96.2% 1546.8 / 33.8 503intergenic (‑96/+562)yjdN/yjdMmetalloprotein superfamily protein/zinc‑ribbon family protein
Reads supporting (aligned to +/- strand):  ref base C (10/9);  new base T (257/226);  total (268/235)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.86e-01

Only 100 of 503 total aligned reads displayed.

CAATCGCGTCGGAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAC  >  NC_000913/4325690‑4325984
                                                                                                                                                   |                                                                                                                                                   
cAATCGCGTCGGAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGt                                                                                                                                                  >  7:25920/1‑151 (MQ=255)
 aaTCGCGTCGGAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTc                                                                                                                                                 <  7:1542909/151‑1 (MQ=255)
    cgcgTCGGAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGc                                                                                                                                              <  8:881655/151‑1 (MQ=255)
      cgTCGGAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCAc                                                                                                                                            >  3:48138/1‑151 (MQ=255)
       gTCGGAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACt                                                                                                                                           <  7:616255/151‑1 (MQ=255)
        tCGGAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTg                                                                                                                                          >  4:735754/1‑151 (MQ=255)
          ggAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGtt                                                                                                                                        <  5:1406928/151‑1 (MQ=255)
           gAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTg                                                                                                                                       >  5:571708/1‑151 (MQ=255)
              cAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCg                                                                                                                                    >  8:1216212/1‑151 (MQ=255)
               aGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCgg                                                                                                                                   >  1:677788/1‑151 (MQ=255)
               aGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCgg                                                                                                                                   <  5:1525971/151‑1 (MQ=255)
                 ttACCGGGAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGAt                                                                                                                                 >  1:748865/1‑151 (MQ=255)
                 ttACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGAt                                                                                                                                 >  1:1673800/1‑151 (MQ=255)
                  tACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATg                                                                                                                                >  8:1319740/1‑151 (MQ=255)
                   aCCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATgc                                                                                                                               >  8:1567136/1‑151 (MQ=255)
                     cGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATgcgg                                                                                                                             >  6:631280/1‑151 (MQ=255)
                     cGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATgcgg                                                                                                                             >  4:1443802/1‑151 (MQ=255)
                     cGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATgcgg                                                                                                                             >  2:818628/1‑151 (MQ=255)
                     cGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATgcgg                                                                                                                             >  3:10087/1‑151 (MQ=255)
                       gCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATgcggcg                                                                                                                           >  6:927092/1‑151 (MQ=255)
                         aaaaGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTa                                                                                                                         <  3:699132/151‑1 (MQ=255)
                           aaGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTaaa                                                                                                                       <  7:485348/151‑1 (MQ=255)
                               gagGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGcc                                                                                                                   <  4:1204394/151‑1 (MQ=255)
                                atgTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCt                                                                                                                  <  7:682354/149‑1 (MQ=255)
                                 ggTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCtt                                                                                                                 <  5:785200/151‑1 (MQ=255)
                                 ggTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCtt                                                                                                                 <  3:1382670/151‑1 (MQ=255)
                                      ggACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCg                                                                                                            >  1:535530/1‑151 (MQ=255)
                                           tAACGGCATGATGGTGCCCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCt                                                                                                        >  3:1631085/1‑150 (MQ=255)
                                           tAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGTTGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCt                                                                                                        >  7:340430/1‑150 (MQ=255)
                                           tAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCt                                                                                                        >  5:413547/1‑150 (MQ=255)
                                            aaCGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTa                                                                                                       <  5:723455/150‑1 (MQ=255)
                                            aaCGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAc                                                                                                      <  1:869319/151‑1 (MQ=255)
                                               ggCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGa                                                                                                   <  2:332914/151‑1 (MQ=255)
                                               ggCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGa                                                                                                   <  6:361775/151‑1 (MQ=255)
                                                gCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACgg                                                                                                    >  5:968680/1‑149 (MQ=255)
                                                  atgatgGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAggg                                                                                                >  3:925627/1‑151 (MQ=255)
                                                    gatgGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTg                                                                                              >  5:1073602/1‑151 (MQ=255)
                                                     atgGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGc                                                                                             <  5:1492949/151‑1 (MQ=255)
                                                         tGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAg                                                                                                  >  6:1609075/1‑142 (MQ=255)
                                                         tGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAg                                                                                                  <  8:1605738/142‑1 (MQ=255)
                                                             cTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAttt                                                                                     >  2:1071462/1‑151 (MQ=255)
                                                             cTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAttt                                                                                     >  5:190235/1‑151 (MQ=255)
                                                               cAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAttt                                                                                     <  7:803479/149‑1 (MQ=255)
                                                                 gTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAg                                                                                 <  4:32379/151‑1 (MQ=255)
                                                                  ttAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAgg                                                                                >  1:380700/1‑151 (MQ=255)
                                                                  ttAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAgg                                                                                >  5:672554/1‑151 (MQ=255)
                                                                   tAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGc                                                                               >  7:105599/1‑151 (MQ=255)
                                                                     agagAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCt                                                                             >  3:125222/1‑151 (MQ=255)
                                                                          aGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTCATAAGACGCGCGAGCGACGCATCAGGAAGTCGGCACTGTTCCCGGATGCGGAGTAAACGCCATATCCGGCCTACGGAGGGTCCGCGAATTTGTAGGCCTGATa                                                                         >  8:269016/1‑150 (MQ=255)
                                                                           gCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAg                                                                       <  3:218117/151‑1 (MQ=255)
                                                                             cAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGAc                                                                     >  8:1001921/1‑151 (MQ=255)
                                                                              aGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGAcg                                                                    <  8:448427/151‑1 (MQ=255)
                                                                               gTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGAcgc                                                                   >  1:1485350/1‑151 (MQ=255)
                                                                                ttAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGAcgcg                                                                  >  6:1418540/1‑151 (MQ=255)
                                                                                  aaGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCa                                                                <  1:1020006/151‑1 (MQ=255)
                                                                                   aGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCaa                                                               <  2:1375106/151‑1 (MQ=255)
                                                                                    gtgtAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAg                                                              <  6:819082/151‑1 (MQ=255)
                                                                                     tgtAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGc                                                             >  7:90563/1‑151 (MQ=255)
                                                                                         gTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCg                                                         <  6:1263220/151‑1 (MQ=255)
                                                                                           tCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGc                                                        >  1:266861/1‑150 (MQ=255)
                                                                                            cGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCa                                                       <  4:853808/150‑1 (MQ=255)
                                                                                             gAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATc                                                     >  3:1303029/1‑151 (MQ=255)
                                                                                             gAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCCGCCTACGGAGGGGGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATc                                                     >  8:519688/1‑151 (MQ=255)
                                                                                              aaaTTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATc                                                     >  8:1133000/1‑150 (MQ=255)
                                                                                                aTTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAgg                                                  <  3:1517281/151‑1 (MQ=255)
                                                                                                 tttATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGAGTCGCATCAGGc                                                 >  4:9485/1‑151 (MQ=255)
                                                                                                 tttATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGc                                                 >  6:1314750/1‑151 (MQ=255)
                                                                                                   tataCAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGc                                                 >  4:39602/1‑149 (MQ=255)
                                                                                                    ataCAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGt                                              <  4:47206/151‑1 (MQ=255)
                                                                                                     taCAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTc                                             >  6:708419/1‑151 (MQ=255)
                                                                                                     taCAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCCCAAGCGTAGCATCAGGCAGt                                              >  5:1584954/1‑150 (MQ=255)
                                                                                                       cAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCgg                                           <  4:566208/151‑1 (MQ=255)
                                                                                                        aGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGc                                          >  2:1672958/1‑151 (MQ=255)
                                                                                                        aGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGc                                          <  2:567520/151‑1 (MQ=255)
                                                                                                            gagaGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGGCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCa                                      <  2:1544928/151‑1 (MQ=255)
                                                                                                               agGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAATCGTAGCATCAGGCAGTAGGCAcacttg                                   >  1:1243002/1‑146 (MQ=11)
                                                                                                                  cggcCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCg                                >  4:1344804/1‑151 (MQ=37)
                                                                                                                   ggcCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCGTCAGGCAGTCGGCACCATTGCCgg                               >  8:553411/1‑151 (MQ=25)
                                                                                                                   ggcCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCgg                               >  8:739928/1‑151 (MQ=25)
                                                                                                                   ggcCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCgg                               >  8:138059/1‑151 (MQ=25)
                                                                                                                   ggcCTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCgg                               >  2:441523/1‑151 (MQ=25)
                                                                                                                     ccTGATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGAt                             >  1:998115/1‑151 (MQ=25)
                                                                                                                        gATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATgc                           <  3:981108/150‑1 (MQ=25)
                                                                                                                        gATAAGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGCCAGTCGGCACCATTGCCGGATgcg                          >  2:919248/1‑151 (MQ=25)
                                                                                                                           aaGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATgcggcg                       >  8:191059/1‑151 (MQ=25)
                                                                                                                           aaGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATAGCCGGATgcggcg                       >  8:1423704/1‑151 (MQ=25)
                                                                                                                            aGACGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCCTTGCCGGCTGCGGCGt                      >  3:1097915/1‑151 (MQ=16)
                                                                                                                              aCGCGCGAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTaa                    <  3:582878/151‑1 (MQ=25)
                                                                                                                                gcgcgAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAAc                  <  4:192250/151‑1 (MQ=25)
                                                                                                                                   cgAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGcc               >  6:436722/1‑151 (MQ=25)
                                                                                                                                   cgAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGcc               <  2:663911/151‑1 (MQ=25)
                                                                                                                                   cgAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGcc               <  8:790561/151‑1 (MQ=25)
                                                                                                                                   cgAGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGcc               <  2:193820/151‑1 (MQ=25)
                                                                                                                                     aGCGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCtt             >  6:1474024/1‑151 (MQ=18)
                                                                                                                                       cGTCGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTAt           <  7:1345266/151‑1 (MQ=18)
                                                                                                                                          cGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATcc         <  4:106602/150‑1 (MQ=18)
                                                                                                                                          cGCATCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCg        >  4:1609423/1‑151 (MQ=18)
                                                                                                                                             aTCAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGcc     <  3:351104/151‑1 (MQ=18)
                                                                                                                                               cAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTa   <  6:1089727/151‑1 (MQ=18)
                                                                                                                                               cAGGTAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTa   <  8:1048989/151‑1 (MQ=18)
                                                                                                                                                   |                                                                                                                                                   
CAATCGCGTCGGAACAGTTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAC  >  NC_000913/4325690‑4325984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A