Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F92 I4 R1 16 228.5 4127912 90.0% 3715120 290.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,347,240 Δ88 bp intergenic (+90/‑57) nrdA → / → nrdB ribonucleoside‑diphosphate reductase 1, alpha subunit/ribonucleoside‑diphosphate reductase 1, beta subunit, ferritin‑like protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2347240 2347327 88 225 [1] [0] 221 nrdA/nrdB ribonucleoside‑diphosphate reductase 1, alpha subunit/ribonucleoside‑diphosphate reductase 1, beta subunit, ferritin‑like protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 23472391 (0.000)187 (0.950) 148/502 0.0 99.8% noncoding (80/203 nt) REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences
?NC_000913 2347328 = 0 (0.000)noncoding (169/203 nt) REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences

GATK/CNVnator alignment

N/A