Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F9 I0 R1 113 83.2 1840812 91.6% 1686183 224.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,949,064 T→C 12.2% E302G (GAG→GGG)  yifB ← magnesium chelatase family protein and putative transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,949,0640TC12.2% 272.0 / 3.5 108E302G (GAG→GGG) yifBmagnesium chelatase family protein and putative transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base T (52/40);  new base C (6/9);  total (58/50)
Fisher's exact test for biased strand distribution p-value = 2.72e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 111 total aligned reads displayed.

TCGAAGCGGTCGAGAAAGGGCCCCGAGAGCCGGTTGAGATAACGTAATGTCTGTTCTGGCGTGCAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCGCAGCACTCTCCAGTGCCTCTTCATTGCTTAAATCTGGCAACAGGCCATTAATACGGCTGGCGAGCATTGTTT  >  NC_000913/3948830‑3949301
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                              
tCGAAGCGGTCGAGAAAGGGCCCCGAGAGCCGGTTGAGATAACGTAATGTCTGTTCTGGCGTGCAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑AAAATTCA‑GGGAGCtcata                                                                                                                                                                                                                                            >  2:79694/1‑238 (MQ=255)
acGAAGGGGTCGGAAAAGGGCCCCGGGAGCCGGTTGAGATAACGTAATGTCGGTTCTGGCGTGCAGCGGTTATGGTTTCCCTGATAATGTCGGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCtcat                                                                                                                                                                                                                                             <  1:459546/237‑1 (MQ=255)
 cGAAGCGGGCGAGAAAGGGCCCCGAGAGCCGGTTGAGATAACGTAATGTCTGTTCGGGCGTGCAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCtcatca                                                                                                                                                                                                                                           <  1:190197/239‑1 (MQ=255)
          cGAGAAAGGGCCCCGAGAGCCGGTTGAGATAACGTAATGTCTGTTCTGGCGTGCAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGACCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACCCCGT‑T‑CCAATTCA‑GGGAGCTCATCAAGAAAAAg                                                                                                                                                                                                                                   >  1:271296/1‑238 (MQ=255)
              aaaGGGCCCCGAGAGCCGGTTGAGATAACGTAATGTCTGTTCTGGCGTGCAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCT‑GGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGGGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑cc                                                                                                                                                                                                                            >  1:583079/1‑239 (MQ=255)
                   gCCCCGAGAGCCGGTTGAGATAACGTAATGTCTGTTCTGGCGTGCAGCGGTTATGGTTTCCCTGCTAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAACGATGGGTCTGCCCGGCTTCAATTGTCTCTCGCAAGGCTTCCCTGGTACGCCGT‑T‑CAAATTCA‑GGTGACCCCTCaaaaaaaacaaccccgcta                                                                                                                                                                                                                         >  2:809765/1‑228 (MQ=255)
                   gCCCCGAGAGCCGGTCGAGATAACGTAATGTCTGTTCTGGCGTGCAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTAAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTa                                                                                                                                                                                                                        >  1:690240/1‑239 (MQ=255)
                            gCCGGTTTAGATAACGTAATGTTTGTTCTGGCGTGCAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAg                                                                                                                                                                                                                <  1:125325/238‑1 (MQ=255)
                            gCCGGTTGAGAATACGTATGGGTTGTTCTGGCGTGCCGCGGTTTTTGTTTCCCTGATAATGTCCGGGAGGGCGTGGATTCATCTCCGCAACAAGCTGGAAACGGGCTGGTTAGGTTATTTTTGCTT‑GTGTGCGTGAAATATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAg                                                                                                                                                                                                                <  2:237182/238‑1 (MQ=255)
                             ccGGTTGAGATAACGTAATGTCTGTTCTGGCGTGCAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGGGCGTGAAAGAGGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGATTCCAGGTGAGGCCGT‑T‑CAAATTCA‑GGAGGCCCATCAAGAAAAAGAACA‑CCCTTAAGCGCCaagg                                                                                                                                                                                                              >  2:15664/1‑236 (MQ=255)
                                          cGTAATGTCTGTTCTGGCGTGCAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGAACTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCCCATCAAAAAAAAAACAG‑CCGTTACGCGCCAGCGAAATTTAACCgg                                                                                                                                                                                                  >  2:153300/1‑238 (MQ=255)
                                              aTGTCTGTTCTGGCGTGCAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCACGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCACGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCggac                                                                                                                                                                                                >  1:439121/1‑234 (MQ=255)
                                               tGTCTGTTCTGGCGTGCAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGAACG‑CCGTTATGCGCCACCGAAATTTCACCGGCCCCTg                                                                                                                                                                                            >  1:789034/1‑239 (MQ=255)
                                                   tGTTCTGGCGTGCAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCCCCGGGCCCTGGact                                                                                                                                                                                        >  1:207875/1‑237 (MQ=255)
                                                    gTTCTGGCGTGCAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACACGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCCCTCGCAAGGCCTCCAGGGTAAGCCGT‑C‑CAAATTCA‑GGATGCCCCTCAGGAAAAAGCACG‑CCGGTAAGCCCACCCGAAAttaacccggcccacggaaa                                                                                                                                                                                        >  2:100264/1‑221 (MQ=255)
                                                     ttCTGGCGTGCAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAAtt                                                                                                                                                                                       >  1:470656/1‑238 (MQ=255)
                                                       tgtgggtcgaGCGGTTATGGTTGCCTTGAAAGTGCCCGGGAGGGCTGGGTTGCATCCCCGCAACAAGCTGGAAACGGGCGGGATAGGTTATTTTTGCTC‑GTGCGCGTAAAAGATGGATCTGCCAGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCCCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTgcg                                                                                                                                                                                    <  2:267369/230‑1 (MQ=255)
                                                          ggttgcggtgtttttgttttCCCTGTTATTGTCCGGGAGGGTTTGGATTCGTCGCCGCAACAGGCTGGAAACGGGCTGGATAGGTTATGTTGGCCC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCCCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCa                                                                                                                                                                                 <  2:165168/222‑1 (MQ=255)
                                                          gCGTGCAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGcc                                                                                                                                                                                  >  1:666438/1‑238 (MQ=255)
                                                             tGCAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGCTAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCCCATCAAGAAAAAACCCG‑CCGTTATGCCCCCGCGAAATTTCACCGGGCCCTGAAATTGCcccccc                                                                                                                                                                               >  2:403401/1‑238 (MQ=255)
                                                             tGCAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCC‑GGTAGCTCATCAAGAAAAAGCa                                                                                                                                                                                                                                 >  2:677113/1‑189 (MQ=255)
                                                             tGCAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCa                                                                                                                                                                                                                                 <  1:677113/189‑1 (MQ=255)
                                                               cAGGGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGGGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGc                                                                                                                                                                             >  1:564354/1‑238 (MQ=255)
                                                               cAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTTGGATTCATCGCCGCAACAAGCGGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACg                                                                                                                                                                                                                               <  2:444542/189‑1 (MQ=255)
                                                               cAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACg                                                                                                                                                                                                                               >  1:444542/1‑189 (MQ=255)
                                                               cAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCCGCGAAATTTCCCCGGGCCCTGGAATTGCGCCACcccc                                                                                                                                                                            >  2:807666/1‑239 (MQ=255)
                                                               cAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCACCGAAATTTAACCGGGCCCTGGAATTGCGCCACCGcc                                                                                                                                                                            >  1:253012/1‑239 (MQ=255)
                                                                            ttCCCTTGTTATGCCCGGTGGGGCTGGGATTCACCGCCACCACAAGCGGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGGGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCCCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGt                                                                                                                                                                <  2:319107/238‑1 (MQ=255)
                                                                             tCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGTTAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGACATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTa                                                                                                                                                              >  1:827612/1‑239 (MQ=255)
                                                                             tCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCGGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTCTGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCCCCACCGccacccaacccgagta                                                                                                                                                              >  2:672718/1‑225 (MQ=255)
                                                                              cccTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACACGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCg                                                                                                                                                                                                   >  2:640642/1‑201 (MQ=255)
                                                                              cccTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCg                                                                                                                                                                                                   <  1:640642/201‑1 (MQ=255)
                                                                              cccTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCTGGCCCTGGAATTGCGCCCCCGCCTACCATCGCAGTTa                                                                                                                                                              >  1:94302/1‑238 (MQ=255)
                                                                              cccTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTa                                                                                                                                                              >  1:808759/1‑238 (MQ=255)
                                                                               ccTGATAATGTCCGGTAGGGCTGGGCTTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGCTTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCTGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGGGCCAGCGAAATTTCACCGGGCCCTGGACTTGCGCCACCGCCTCCCATCGCAGTTAAc                                                                                                                                                            >  1:201869/1‑239 (MQ=255)
                                                                                   ttAATGTCGGGTTGGGTTGGGTTTACTCGCCCCAAAAAGGTGGAAACGGGCTGGATAGGTTATTTTTGCCC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATg                                                                                                                                                        <  2:470656/238‑1 (MQ=255)
                                                                                   aTAATGTCCGGTAGGGCTGGTATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACg                                                                                                                                                                                                                               <  2:497805/169‑1 (MQ=255)
                                                                                   aTAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACg                                                                                                                                                                                                                               >  1:497805/1‑169 (MQ=255)
                                                                                     taTGGCCGGTGGGGGTGGGTTTCATCGCCGCAACAAGGTGGAAACGGGCTGGATAGGTTATTTTTGTCC‑GTGGGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTTTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCa                                                                                                                                                      <  2:789034/238‑1 (MQ=255)
                                                                                     aaTGTCCGGTAGGGCTGGGATTCCTCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCa                                                                                                                                                      <  1:79694/239‑1 (MQ=255)
                                                                                       tGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACt                                                                                                                                                    <  1:539125/239‑1 (MQ=255)
                                                                                         tCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACC‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCCTGAATTGCGCCACACCCTACCCTCCCAGTTAAcagtgccatgg                                                                                                                                                  >  2:61426/1‑229 (MQ=255)
                                                                                         tCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATAGGCTCTCGCAAGGCATCCAGTGTAAGCCGT‑T‑CAAATTCA‑GGTGGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGGGAAATTTCCCCGGGCCCTGGAAATGCGCCACCGCCTccccccccaattaaacatgaccgtg                                                                                                                                                  >  2:477933/1‑217 (MQ=255)
                                                                                               aGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAg                                                                                                                                            <  1:153300/239‑1 (MQ=255)
                                                                                               aGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGGGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTACCCGGGCCCTGGAATTACGCCACCGCCTACCATCCCAGTTAAGAAGGCACtgggggaag                                                                                                                                            >  2:846186/1‑232 (MQ=255)
                                                                                                     gggATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAg                                                                                                                                       <  1:52529/238‑1 (MQ=255)
                                                                                                     gggATTCATCGCCGCAACAAGCGGGAAACGGGTTGGAAAGGTTAGTTTTTCTC‑GGGTGCGTGAAAGATGGATCTGCCAGGATTCAATCGGCTCCCGCAAGGCATCCAGTGTACGCCGT‑C‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAg                                                                                                                                       <  1:832852/238‑1 (MQ=255)
                                                                                                     gggATTCATCGCCGAAAAAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAg                                                                                                                                       <  1:360774/238‑1 (MQ=255)
                                                                                                            aTCGCCGCAACAAGCTGTAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCg                                                                                                                                                                    <  1:12397/202‑1 (MQ=255)
                                                                                                            aTCGCCGCAACAAGCTGTAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCg                                                                                                                                                                    >  2:12397/1‑202 (MQ=255)
                                                                                                            aTCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGCGCGGAACgg                                                                                                                               >  1:243527/1‑239 (MQ=255)
                                                                                                                 gccaacagGGTTGAAAGGGGCTGGTTTGGTTTTTTTGGCTT‑GTGTGCGTGAAGGATTGTTCGGCCAGGTTTCAACTGGCCCTCGCAAGGCTCACAGTGTCCACCTC‑T‑CAAATGCA‑GGTAGCCCATCAAGAAAAAGCCCG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCt                                                                                                                          <  2:336637/237‑1 (MQ=255)
                                                                                                                 cgcAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGACAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCCCTGTGATGAGGTGAGCGGCACggga                                                                                                                             >  1:70503/1‑235 (MQ=255)
                                                                                                                         gcgggAAAGTGGGTGTATAGGTTTTTTTTGTCC‑GGGGGCGTAAAAGATGGATCTGCCCGGATTAAGTCGCCCCTCGAAAGGAACCCAGTTTACGCCGT‑T‑CAAATTCA‑GGTAGCCCACCAAAAAAAACCACG‑CCGTTAGGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACCGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCAt                                                                                                                  <  2:148462/236‑1 (MQ=255)
                                                                                                                           tGGAACCGGGGTGTATAGTTTATTTTTGCTC‑GTGTGCGTGAAAGGTGGATCGTCCAGGATTCAATCGGTTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCAt                                                                                                                  <  1:214434/237‑1 (MQ=255)
                                                                                                                                    cgtggattgtgtatgtgtGCTC‑TTGTGCGTGAAAGGTGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCTTCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTa                                                                                                        <  1:240602/221‑1 (MQ=255)
                                                                                                                                        gATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATg                                                                                                                                                                                                                      <  1:699775/124‑1 (MQ=255)
                                                                                                                                        gATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATg                                                                                                                                                                                                                      >  2:699775/1‑124 (MQ=255)
                                                                                                                                             gTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGGGATGAGGTGAGCGGAAGGGGCGCTGCCGCCATTGTTTTTGTACTGATTCa                                                                                                >  1:893533/1‑237 (MQ=255)
                                                                                                                                              ttttttttGCGG‑GTGTGCTGAAAAGATGGACGTGCCCGGATTCAACCGGCCCTCGCAAGGCATCCAGTTTACGCCTT‑T‑AAAATTCA‑GGTAGCTCATAAAGAAAAGGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGc                                                                                              <  1:477933/235‑1 (MQ=255)
                                                                                                                                              ttATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCCCAGTTAACGATGAACTGTGATGAGGTGACCGGACCGGGCCCGCCCGCCCTTGTTTTTG‑ACTGAtttcacca                                                                                            >  2:142991/1‑233 (MQ=255)
                                                                                                                                              gttttttttCTCTGTGTGGGTGAAAGTTGAGTCTCCCCGGTTTCAATCGGTCCTCAAAAGGCACCCAGTGT‑CGCCCT‑TGCAAATCCA‑CGTAGCCCATAAAGAAAAACCACG‑CCTTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCCCCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGc                                                                                              <  2:387309/236‑1 (MQ=255)
                                                                                                                                                aTTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTCACAATGCACTGGGATGAGGTGAGCGGAAGGGGGCCTGCCCCCCTTGttttttaatttattaaaaatt                                                                                           >  2:302220/1‑223 (MQ=255)
                                                                                                                                                    ttGGTC‑GTGGGCGTGAAAGATGGATCCGCCCGGATTGAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCCCG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTAcc                                                                                       <  1:127816/239‑1 (MQ=255)
                                                                                                                                                    ttGCCC‑GTGGGCGTAAAAGATGGATCTGCCCGGATTCAACCGGCTTCCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTAcc                                                                                       <  1:807666/239‑1 (MQ=255)
                                                                                                                                                    tggccc‑GTGTGCGTGAAAGATGGACCTGCCCGGATTCAATCGGATCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTAcc                                                                                       <  1:194536/234‑1 (MQ=255)
                                                                                                                                                        cccgggtggggaaaaGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGa                                                                                    <  1:61426/227‑1 (MQ=255)
                                                                                                                                                              ggCGGGAAAGGTGGTTCCGCCCGAATTCAATCGGCTCTCGCAAGGCATCCAGGTTCCGCCTT‑T‑AAAATCCG‑GGTAGCGCAACAAGAAAAAGCACG‑CCGTTAGGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTaa                                                                               <  2:893533/237‑1 (MQ=255)
                                                                                                                                                                  taaaaGAGGGAGTTGCCCGGTTTCAAGCGGCTCTCACAAGGCATCCAGTGTACGCCGT‑T‑AAAATCCA‑GTTAGCTCAACAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCg                                                                          <  2:207875/237‑1 (MQ=255)
                                                                                                                                                                   gAAAGGTGGGTCTGCCCGATTTCAATCGGCTCTCGCAAGCCATCCGGTGTACGCCGT‑T‑CAAATTCA‑GGTTGCTCACCAAGAAAAACCACG‑CCGTTATGCCCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCg                                                                          <  2:666438/238‑1 (MQ=255)
                                                                                                                                                                       aaTGGTTCTGCCCTCGTTAAAGCGGCTCCGCCAAGGCATCCAGTGT‑CGCCCTGT‑CAATTTCA‑GGTACCTACACAGAAAAAAGCGCG‑CCGTTATGCCCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCgcagca                                                                     <  2:70503/238‑1 (MQ=255)
                                                                                                                                                                         tGGATCTGCCCGGATTCAATCGGCTCTCGCAGGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAACCACG‑CCGTTATGCGCCAGCGAAATTGCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCgcagca                                                                     <  1:100264/237‑1 (MQ=255)
                                                                                                                                                                          ggATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTACGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCCGCCGCCATTGTTTTTTTACTGATTCAGCCTTTACCAACCTTAAAACCGCAGCCct                                                                   >  2:867632/1‑238 (MQ=255)
                                                                                                                                                                          ggATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑AGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGACCGGCAGCTGCCGCCATTGTTTTTGAACTGATTCAGCATTTACCAGACTTACTATCGCCGCActc                                                                  >  1:344605/1‑239 (MQ=255)
                                                                                                                                                                             cttGCCCGGTTTCACCCGCCTTCCGCAGCGCTTCCCGGGTACGCTG‑‑T‑CAAATTCAGGGTAGCTCATC‑AGGAAAAGCCCGCCCGTTATGCCCCAGGGAAATTCCCCCGGCACTTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATTAGGTGAGCGGAACGGTGGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCGCAGCACTCTcc                                                               <  2:432585/237‑1 (MQ=255)
                                                                                                                                                                               tccccGGATTCAATCGGCTCGCGCAAGGAATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCAACAAGAAAAACCACG‑CCGTTATGCGCCAGCGAAATTGCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCGCAGCACTCTCCAg                                                             <  1:659279/237‑1 (MQ=255)
                                                                                                                                                                                 cccGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACCATGCACTGTGATGAGGTGAGAGGAACGGGCGCTGCCGCCATGGTTTTTTTACTGATTTCACATTTCCCAAGCTTAAAATCCCAACACTCCCCaag                                                            >  2:405201/1‑236 (MQ=255)
                                                                                                                                                                                      aTTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAAGATCTCACCACTCTCCAGTGCctct                                                      >  1:438989/1‑239 (MQ=255)
                                                                                                                                                                                         cAATCGGCTCTCGCAAGGCATCCAGTGTACCCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCGCAGCACTCTCCAGTGCCTCTTCa                                                   <  1:715900/239‑1 (MQ=255)
                                                                                                                                                                                         aaatgggcctccGCAAGGCATCCAGGGTCCGCCTT‑T‑AAAATTCA‑GGTTCCCCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCGCAGCACTCTCCAGTGCCTCTTCa                                                   <  1:809765/228‑1 (MQ=255)
                                                                                                                                                                                           aTCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATGGTTTTTGTACTGATGCAGCATTTACCTGACTTAATATCGCAGCACTCTCCCGTg                                                           >  1:556076/1‑229 (MQ=255)
                                                                                                                                                                                              ggCTCTCGAAAAGCATCCAGTGTACCCCTT‑T‑CAAATTAA‑GGGAGCCCACCAAGAAAAAGCACC‑CCGTTATGCGCCAGCGAAATTTCCCCGGGCCCGGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCTATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCGCAGCACTCTCCAGTGCCTCTTCATTGCt                                              <  2:344605/239‑1 (MQ=255)
                                                                                                                                                                                                    cccAAGGCTTCCAGTGTACGCCGT‑T‑CAAATTGA‑GGTACCTAATAAAAAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCCCCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCGCAGCACTCTCCAGTGCCTCTTCATTGCTTAAATc                                        <  2:808759/237‑1 (MQ=255)
                                                                                                                                                                                                           cacccAGTGTACCGCTT‑T‑AAAATTAA‑GGAAGCCCACAAAGAAAAATCACG‑CCGTTAGGCGCCAGGGAAATTTCACCGGGCCCGGGAATTGGGCCACCGCCTACCAGCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCGCAGCACTCTCCAGTGCCTCTTCATTGCTTAAATCTGGCaa                                  <  2:533702/235‑1 (MQ=255)
                                                                                                                                                                                                           cATCCAGTGTACTCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCCCG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCATTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCGCAGCACTCTCCAGTGCCTCTTCATTGCTTAAATCTGGCaa                                  <  1:15664/238‑1 (MQ=255)
                                                                                                                                                                                                            atccaggtgaCGGCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCGCAGCACTCTCCAGTGCCTCTTCATTGCTTAAATCTGGCAAc                                 <  1:236109/229‑1 (MQ=255)
                                                                                                                                                                                                            aTCCAGTGTACGCCGT‑T‑CAAATCCA‑GGTAGCCCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCGCAGCACTCTCCAGTGCCTCTTCATTGCTTAAATCTGGCAACa                                <  1:846186/239‑1 (MQ=255)
                                                                                                                                                                                                             tcctcttcccgccgc‑T‑CAATTTCA‑GTTGCGCCAACAAAAAAAAGCACG‑CCTTTATGCGCCAGCGAAATTTCCCCGGGACTGGGAATTGCGCCCCCGCCTACCATCGCAGTTAACGATGCATTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCGCAGCACTCTCCAGTGCCTCTTCATTGCTTAAATCTGGCAACAg                               <  2:253012/230‑1 (MQ=255)
                                                                                                                                                                                                             tCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCGCAGCACTCTCCAGTGCCTCTTCATTGCTTAAATCTGGCAACa                                >  1:177737/1‑238 (MQ=255)
                                                                                                                                                                                                             tCCAGTGTACGCCGT‑T‑CAAATTCA‑GGAAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTGACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCGATTGTTTTTGTACTGATTCAGCCTTTACCAGACTTAATATCg                                                                          >  1:827883/1‑196 (MQ=255)
                                                                                                                                                                                                                       gCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCCAAGCACTCTCCAGTGCCTCTTCATTGCTTAAATCTGGCACCAGGCCATTAAt                      >  1:472533/1‑238 (MQ=255)
                                                                                                                                                                                                                           t‑t‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCGCAGCACTCTCCATTGCCTCTTCATTGCTTAAATCTGGCAACAGGCCATTAATACg                   >  1:189255/1‑237 (MQ=255)
                                                                                                                                                                                                                             t‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGCCTTAATATCGCAGCCCCCTCCAGTGCCCCTTCATTTCTAAAAACTGGAAACAGGCCATTAAAACg                   >  2:291955/1‑236 (MQ=255)
                                                                                                                                                                                                                             t‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCGCAGCACTCTCCAGTGCCTCTTCATTGCTTAAATCTGGCAACAGGCCATTAATACg                   >  1:449099/1‑236 (MQ=255)
                                                                                                                                                                                                                             t‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCGCAGCACTCTCCAGTGCCTCTTCATTGCTTAAATCTGGCAACAGGCCATTAATACg                   >  1:144763/1‑236 (MQ=255)
                                                                                                                                                                                                                                 aaTTCA‑GGTACCTCATCAAGAAAAATCACG‑CCGCTTTTGGCCAGCAAATTTTCACCGGGCCTGGTAGTGGCGCCACCGCCTACCATCTGAGTTAACGATGCATTGTGATGAGGTGAGCGGAACGGGTGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCGCAGCACTCTCCAGTGCCTCTTCATTGCTTAAATCTGGCAACAGGCCATTAATACGGCTGGc             <  2:439121/239‑1 (MQ=255)
                                                                                                                                                                                                                                        ggTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCCCAGCACTCTCCAGGGCCTCTTCATTGCTTAAATATGGCAACAGGCCATTAAAACGGGTGGGGAGcga       >  2:812637/1‑237 (MQ=255)
                                                                                                                                                                                                                                             cTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCGCAGCACTCTCCAGTGCCTCTTCATTGCTTAAATCTGGCAACAGGCCATTAATACGGCTGGCGAGCAt       <  1:565349/234‑1 (MQ=255)
                                                                                                                                                                                                                                             cTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCCCAGCACTCTCCAGTGCCTCTTCATTGCTTAAATCTGGCAACAGGCCATTAATACGGCTGGCGAGCAt       >  2:565349/1‑234 (MQ=255)
                                                                                                                                                                                                                                             cTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACAATCGCAGTTAACGATGCACTGTGATGAGGTGCGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCGCAGCACTCTCCAGTGCCCCTTCATTGCTTAAATCTGGCAACAGGCCCTTAATACGGCTGGCACGCATTGttt  >  1:67768/1‑239 (MQ=255)
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                              
TCGAAGCGGTCGAGAAAGGGCCCCGAGAGCCGGTTGAGATAACGTAATGTCTGTTCTGGCGTGCAGCGGTTATGGTTTCCCTGATAATGTCCGGTAGGGCTGGGATTCATCGCCGCAACAAGCTGGAAACGGGCTGGATAGGTTATTTTTGCTC‑GTGTGCGTGAAAGATGGATCTGCCCGGATTCAATCGGCTCTCGCAAGGCATCCAGTGTACGCCGT‑T‑CAAATTCA‑GGTAGCTCATCAAGAAAAAGCACG‑CCGTTATGCGCCAGCGAAATTTCACCGGGCCCTGGAATTGCGCCACCGCCTACCATCGCAGTTAACGATGCACTGTGATGAGGTGAGCGGAACGGGCGCTGCCGCCATTGTTTTTGTACTGATTCAGCATTTACCAGACTTAATATCGCAGCACTCTCCAGTGCCTCTTCATTGCTTAAATCTGGCAACAGGCCATTAATACGGCTGGCGAGCATTGTTT  >  NC_000913/3948830‑3949301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A