Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F9 I0 R1
|
113 |
83.2 |
1840812 |
91.6% |
1686183 |
224.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,368,956 |
C→T |
20.0% |
L98L (CTA→TTA) |
fxsA → |
suppressor of F exclusion of phage T7 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,368,956 | 0 | C | T | 20.0%
| 144.3
/ 5.6
| 70 | L98L (CTA→TTA) | fxsA | suppressor of F exclusion of phage T7 |
| Reads supporting (aligned to +/- strand): ref base C (18/36); new base T (12/3); total (31/39) |
| Fisher's exact test for biased strand distribution p-value = 2.40e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTTTATTCAGGTTGCCCATGTATTGGGGGTATTGCTGACCCTCGTGCTGGTTATATTCACGTCAGTTATCGGTATGTCACTGGTACGTAACCAGGGCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCGCGACCGCCTTGATCAT‑AAAGACGATCGCCAGGATTAATG‑TCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTG > NC_000913/4368721‑4369194
|
tttttttGAGGTTTCCTTTGTTTTGGTGGTATTGCTGCCCATCGGGCTTGTTAAATTCACGGCAGTTATCGGTATGTCACCGGTACGTAACCAGGGCTTTAAGAATTTCGTGCAGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑c < 2:101647/238‑1 (MQ=255)
gTTGCCCATGTATTGGGGGAATTGCTGACCCTCGTGCTGGTTATATTCACGTCAGTTATCGGTATGTCACTGGTACGTAACCAGGGCTTTAAGAATTTCGTGCTGATGCAGCAAACAATGGAGGCGGGTGAAAACCCAGCGTCCGGGGAGAGTTAAAAGGGTTTC‑CTGTGCATTGTTGGTTTGTGTGTTTTTTTACCGTGCGTTTTTACTCTCACCCTC‑GGCCTTTTACCTTTTTTTgc > 2:526732/1‑239 (MQ=255)
ccATGTATTGGGGGTATTGCTGACCCTCGTGCTGGTTATATTCACGTCAGTTATCGGTATGTCACTGGTACGTAACCAGGGCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGGGATGATTAAAAGGGTTTCGCTGATCATTGCTTGGTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTTCT‑CTTTTATTtccgcccg > 1:38883/1‑237 (MQ=255)
ttttGGGGGTTTTGGTTGCCCTCTTGTTGGTTTTTTTTACGGTATTTATCGGTATGGCACTGGTACGGAACCAGGGGTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCaa < 2:274777/237‑1 (MQ=255)
ttttGGGGGTTTTGCTGCCCCGTGTGTTGGTTTTTTTCCAGTCATTTATCGGGATGTCACTGGTACGTAACCAGGGCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGTTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCaa < 2:678271/237‑1 (MQ=255)
aTTGGGGGTATTGCTGACCCTCGTGCTGGTTATATTCACGTCAGTTATCGGTATGTCACTGGTACGTAACCAGGGCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCaa < 1:647178/238‑1 (MQ=255)
aTTGCTGACCCTGGTGCTGGTTATAGTCACGTCAGTTACCGGTATGCCACTGATACGTAACCAGGGATTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGTTGAAATCCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGa < 1:526732/239‑1 (MQ=255)
aTTGCTGACCCTCGTGCTGGTTATATTCACGTCAGTTATCGGTATGTCACTGGTACGTAACCAGGGCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGGGATGATTAAAAAGATTTTGCTGATCTTTTCTGCGTTGCTGCCTTTTTTTACGGGCGTTTTTTCCCCCTTCCCC‑GGGCTTTTT‑CTTTTTTTTccgccgtggtcaaaacacccg > 2:647178/1‑223 (MQ=255)
aTTGCTGACCCTCGTGCTGGTTATATTCACGTCAGTTATCGGTATGTCACTGGTACGTAACCAGGGCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGGTCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGGCTTTTA‑CTTTTTTTTCCGCCCGTGCAAAA‑ACATCTg > 1:533747/1‑238 (MQ=255)
taCCCTCGTGCTGGTTATATTCACGTCAGTTATCGGTATGTCACTGGTACGTAACCAGGGCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGa < 1:4972/238‑1 (MQ=255)
aCCCTCGTGCTGGTTATATTCACGTCAGTTATCGGTATGTCACTGGTACGTAACCAGGGCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGGTGATTTAAAAAGTTTCGCCGATCATTGCTGGGTTGCTGCTTTTTTTTCCGGGCTTTTTTATCGACTTCCTC‑GGGCTTTTT‑CTTTTTTTTCCCCCCGGGCAAAA‑GAACCTGaaatggaa > 2:90846/1‑232 (MQ=255)
cGTGCTGGTTATATTCACGTCAGTTATCGGTATGTCACTGGTACGTAACCAGGGCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGGGAAAACCCAGCG‑GCGGAGGTGATTTAAAATGGTTTGCTGGTCATTGCTGGTTTGGTGCTTTTATTTACGGGCTTTTTTTACGCCTTTCTC‑GGGCTTTTC‑CTTTTTTTTGCCCCGGTCGTAAA‑ACACTTGCCAGTGA‑AGGTgg > 2:571291/1‑238 (MQ=255)
ggtGGTTTTTTTCACGTAAGTTTTGGGTATGGTATGTGGACGTAACCAGGGCTTTAAGAATTGCGTGCGGATGCAGCAAAAAATGGCGGCGGGTGAAAGCCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTGTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGc < 2:20919/237‑1 (MQ=255)
gTTATATTCACGTCAGTTATCGGTATGTCACTGGTACGTAACCAGGGCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAAGGTTTTGCTGATCATTGCTGGGTTGCTGCTTTTTTTACCGGGGTTTTTTACCGACTTCCCC‑CGTCTTTTA‑CTTTTTTTGCCCCCGGTGCCAAA‑GCATCTGACAGTGG‑AGTTTATGCCGCa > 1:660842/1‑239 (MQ=255)
tttccGTTAGTTTTCGGTTTGTCACTGGTACGTAACCAGGGCTTTAAGAATTTCGTGCTGATGCAGAAAAAAAGGGCGGGGGGTGAAAACCCAGGG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTCCCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTgcg < 2:281888/235‑1 (MQ=255)
cGTCAGTTATCGGTATGTCACTGGTACGTAACCAGGGCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTTCCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAACACAT‑TGTCAGTGA‑AGTTTATGCCGCATTTTGGCttt > 1:911200/1‑239 (MQ=255)
cGTCAGTTATCGGTATGTCACTGGTACGTAACCAGGGCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAGAGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCCGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTTCCCCCGGTGCAAAA‑ACATCTGCCCGTGA‑AGTTGATTCCGCCTTTtcggctt > 1:281888/1‑235 (MQ=255)
cGTCAGTTATCGGTATGTCACTGGTACGTAACCAGGGCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAGAGTTTCGCTGATCATTGCTGGTTTGCTGCCTTTATTTACGGGCCTTTTTACCGACTTCCTC‑GGTCTTTTA‑CTTTTATTGCCCCCGGTGCAAAA‑ACATCTTACAGTGA‑AGTTGATTCCGCATTTTCGCttt > 1:825937/1‑239 (MQ=255)
aGTTATCGGTATGTCACTGGTACGTAACCAGGGCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTgccgcc > 1:642852/1‑189 (MQ=255)
aGTTATCGGTATGGCACTGGTACGTAACCAGGGCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTgccgcc < 2:642852/189‑1 (MQ=255)
ttATCGGTATGTCACTGGTACGTAACCAGGGCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAATGGTTCGCTGATCATTGATGGTTTTGTGCTTTTATTACCCGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTTCCGCCCGTGCCAAA‑AAATCTTCCAATGA‑AGTTTGTGTCGCAATTTGGCtttttttc > 2:323600/1‑234 (MQ=255)
ggTATGTCACTGGTACGTAACCAGGGCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGGTTAAAAAAGTTTCGCTGATCATTGCTGGTTTGCGGCTTTTATTACCGGGCTTTTTTTCCTCCTTCCTC‑GGGCTTCTA‑CTTTTTTTTCCGCCGGTGCAAAA‑ACACCTGACACTGA‑AGGTCATGCCCCATTTCTGCTTTTTTCGCAAGcc > 2:160767/1‑239 (MQ=255)
gTCACTGGTACGTAACCAGGGCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCCTTTTTACCGACTTCCTC‑GGTCTTTTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGGGA‑AGGTGATGCCGCATTTTGGCTTTtcttcccttcctgggg > 1:464176/1‑226 (MQ=255)
aCTGGTACGTAACCAGGGCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGGTAAAACCCCGCG‑GCGGAGGTGGTAAAAAGGTGTTCGCTGATCATTGCTGGTTTGTTGCTTTTATTACTGGGCTTTTTTACCGACTTCCCC‑GGGCTTTTA‑CTTTTTTTTCCGCCGGGGCAAAA‑ACATTTGCCCGTGA‑AGTTGATACCCCATTTCTGCTTTTCTTCCATGcgctgggggg > 2:802067/1‑230 (MQ=255)
aCGTAACCAGGGCTTTAAGAATTTCGGGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTa < 1:571291/239‑1 (MQ=255)
gggCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGGCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACCGTGA‑AGTTTATGCCGCACTTTCGCTTTTTTCGCATGCCTGGCGGC‑GGGTTTTGAG‑CCggg > 1:162169/1‑238 (MQ=255)
gggCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAAACCAGCG‑GCGGAGATGATTAAAAGAGGTTCGCTGGTCATTGCTGGTTTTCTGCTTTTATTACCGGGCGTTTTTACCGACTTCCTC‑GGTCTTATA‑CTTTTATTTCCGCCGTGGTAAAA‑ACATCTGCAAGGGAGATTTAATCCCCACTTTGGGCTTTT‑TCGCGTGCCCGGCGGC‑GGGGTTATCG‑CCcggg > 2:522794/1‑238 (MQ=255)
ggCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGGTTGCTGCTTTTTTTATCGGGCTTTTTTACCGGCTTCCTC‑GGGCTTTTA‑CTTTTTTTTCCGCCGGTGCCAAA‑GCACCTTGCAGGGA‑ATGTGAGTCCCCATTTTCGCTTTTCTCGCATGCCCGGCGGCGGGTTTAAGCG‑CCGGGa > 2:31356/1‑239 (MQ=255)
gCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGa < 1:249991/237‑1 (MQ=255)
tttataatttggggtggATGCAGCAAAAATGGGTGGGGGCGGAAACACCAGGT‑GCGGAGATGATTAAAAGTGTGTAGCTGATAGTGGCCGGTTTGCTGCTTTTATGACCGGGCTTTTATGACGACTTCCTC‑GGCCTTCTA‑CTTGTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGGGCTTTTCTCGCATGACTGGCGGC‑GGTTTTAGCG‑CCGTGACCGGt < 2:635937/223‑1 (MQ=255)
ttAACAATTGCGTGTTGAGGCACAAAAAACTGGAGGCGGCTGAAAAGCCAGGG‑GATGTGATGTTGAAAAGAGTGTCGTTGTTCCTTGCTGGTTTGCGTTTTTTATTTCCGGGCTTTTTGACCGCCTTCATC‑GGTCTTCTT‑CTTTTATTGCCGCCGGTGCAAAA‑ACATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGt < 2:531153/239‑1 (MQ=255)
tAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAAACCAGCG‑GCGGAGATGATTAAAAGAGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTTTTACCGGGCTTTTTTTCCGACTTCCTC‑GGGCTTTTA‑CTTTTATTTCCGCCCGTGCAAAA‑ACACCTGCCAGGGA‑AGTTGATGCCCCATTTTCGCCTTTTTCCCATGCCTGGGGGG‑GGGTTTATAG‑CCCGGGCCgggg > 2:183625/1‑237 (MQ=255)
aTTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTg < 1:127530/170‑1 (MQ=255)
aTTCCGTGCTGAGGCAGAAAAAAATGGCGGGGGGGGAAAACCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTTCCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGt < 1:737931/239‑1 (MQ=255)
tttCGTGGTGATGAAGCAAAAAATGGCGGCGGGTGAAACCCCAGCG‑GCGGAGATGATTAAAAGTGTTTTGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTa < 1:837620/239‑1 (MQ=255)
tcgtgcgtgtGCAGAAAAAAATGGGGGCGGGTGAAACCCCGGGG‑GGGGAGATGATTAAAAGTGTTTCCCTGACCATTGCTGGTTTGCTGTTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTT‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAAt < 2:464176/230‑1 (MQ=255)
cGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGGTTTTGCGCCCGGGACCGTGGGGGGTata > 1:173737/1‑237 (MQ=255)
gaggcagcaAAAAATGGCGGCGGGTGAAACCCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTg < 1:160767/236‑1 (MQ=255)
tcaaaaaatTGGCGGCGGGTTAAAACCCGGGG‑GCGGAGTTTATTAAAAGTTTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGt < 2:660842/236‑1 (MQ=255)
gaaaaaaaTGGGGGGGGGTGAAACCCCGGCG‑GGGGATATGATTAAAAGTTTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGt < 2:247574/236‑1 (MQ=255)
aaaaTGGGGGCGGGTGAAAACCCGGGG‑GTGGAGATGATTAAAAGTTTTTCCGTGATTATTGCGTGTTTTCTGTTTTTATTACCGGGCTTTTTGACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTa < 2:162169/239‑1 (MQ=255)
aaaTGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTAc < 1:653680/239‑1 (MQ=255)
gggggggggtaaacCCCCGCG‑GTGGAGTTGATTAAAGGTGTTCTGCTGAGCATTGCTGGTTTTCTGCTTTTATTACCGGGTTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCg < 2:38883/229‑1 (MQ=255)
gcggcgGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCg < 1:183625/239‑1 (MQ=255)
cgggggGTGAAACCCCATGG‑GGGGGTATGTTTAAAAGTTTTTCCCTTATCATTGCTGTGTTTCTGCTTGTATTACCGGGTTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTTCAAAA‑GCATCTTACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCg < 2:204441/238‑1 (MQ=255)
aGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTTACG‑CCGGGAGCCGGGGCGGGGATACTTTTTATGGTGAGGACCAGCGAAAGGGAGATGAggggg > 2:517579/1‑235 (MQ=255)
ggggggggttttgtttaaagttttttCGCTGATCTTTGCTGGTTTTCTGTTTTTATTCCCGGGCTTTTTGCCGGACTTCCTC‑GGTCTTTTA‑TTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGGTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACTAGCGAAAGGATGATGAGcgcg < 2:173737/216‑1 (MQ=255)
gcg‑gcgGGTATTATTAAAAGTTTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCGCGa < 1:473478/239‑1 (MQ=255)
gcg‑gcgGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCGCGa < 1:132704/239‑1 (MQ=255)
gattatTAAAAGTTTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCGCGACCGCCtt < 1:323600/238‑1 (MQ=255)
tttCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGt > 1:352647/1‑188 (MQ=255)
tttCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGt < 2:352647/188‑1 (MQ=255)
tttCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCGCGACCGCCTTGATCCT‑AAAGACGa > 1:632078/1‑238 (MQ=255)
cGCTGATCGTTGCTTGTTTGCTGCTTTTATTACCGGGCTTTTTTCCCGATTTCCTC‑GGTCTGCTG‑CTTTTATGGCCTCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CGGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCGCGACCGCCTTGATCAT‑AAAGACGATCGc < 1:66480/239‑1 (MQ=255)
gCTGATCTTGGCTGGTTTGCGGCTTTTTTTCCCGGGTTTTTTTACCGACTTCCGC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTCAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCGCGACCGCCTTGATCAT‑AAAGACGATCGcc < 1:31356/239‑1 (MQ=255)
aTCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGGGTACCAGCGAAAGGATGATGAGCGCGACCGCCTTGATCAT‑AAAGACGATCGCCAgag > 1:867231/1‑237 (MQ=255)
cATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGTGTACCAGCGAAAGGATGATGACGGCGACCGCCTTGATCAT‑AAAGACGATCGCCAGGGtt > 1:840498/1‑239 (MQ=255)
tGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGTTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGCCCGGTGGCGGGAATACTTTTTTTGGGGAGTACCATCGAAAGGATGAGTAGCGCGCCCGCCCTTATCAC‑AAAAAAGAGCGCCCggggtaag > 2:751622/1‑233 (MQ=255)
ttttgttttttttttTGCGGGGTTTTTTTCCCGTCTTCCTC‑GGTCTTCTA‑CTTTTATTCCCGCCGGTGCAAAA‑GGATCTGACAGGGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCGCGACCGCCTTGATCAT‑AAAGACGATCGCCAGGATTAATG‑TCg < 2:533747/229‑1 (MQ=255)
gTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGAAGATGAGCGGGACCGCCCTGATCAT‑AAAGACGATCGCCAGGGTTAATG‑TCGa > 1:43801/1‑239 (MQ=255)
tgctgcTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCGCGACCGCCTTGATCAT‑AAAGACGATCGCCCGGATTAATG‑TCGaaa > 1:715531/1‑238 (MQ=255)
gttttttttttttCCGGGTTTTTTTCCCGACTTCCTC‑GGTCTTCTA‑CTTTTTGTGCCCCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCGCGACCGCCTTGATCAT‑AAAGACGATCGCCAGGATTAATG‑TCGAAACg < 2:715531/234‑1 (MQ=255)
gctgctTTTATTCCCGGTCTTTTTTCCCGACTTCCGC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCGCGACCGCCTTGATCAT‑AAAGACGATCGCCAGGATTAATG‑TCGAAACg < 1:522794/239‑1 (MQ=255)
ctgctTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCGCGACCGCCTTGATCAT‑AAAACCGATCGCCAGGATTAATG‑TCGcaaag > 1:599014/1‑236 (MQ=255)
tttttttATTTCCGGGTTTTTTGACCGCCGTCCCC‑GTGCTTTTC‑CTTTGTTGGCCGCCGGTGCAAAA‑GCATCTGTCGGGGA‑AGGTGATGCCGCATTTGAGCTTTTCTCGCATGCCGGGGGGC‑GGTTTTAGCG‑CTGGGACCGGTGGCGGTAAGCCTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCGCGACCGCCTTGATCAT‑AAAGACGATCGCCAGGATTAATG‑TCGAAACGcc < 2:261016/236‑1 (MQ=255)
tttttttttctccggtttttttACCCCCTTCCCCGGGTTTTTTT‑TTTTTGTGCCCGCCGGTGCAAAA‑GCATCTGCCAGTGA‑ATTTGATGCCGCATTTGCGCTTTTCTCGCAGGCCTGGGGGC‑GTTTTTGGCG‑CCGGGACCGGTGGCGGTAATCCTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCGCGACCGCCTTGATCAT‑AAAGACGATCGCCAGGATTAATG‑TCGAAACGcc < 2:867231/223‑1 (MQ=255)
cGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGGGGGGTCCAGCGGAAGGAGGATTGGCGCGAACCCCTTGTTCATAAAAAACAATC‑CCAGGATTAATGTTCAAAACGCCggttatagggg > 2:304309/1‑230 (MQ=255)
gCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATGGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCGCGACCGCCTTGATCAT‑AAAGACGATCGCCAGGATTAATG‑TCGAAACGCCGGATTATGTGGTTa < 1:517579/238‑1 (MQ=255)
ttttACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGGGGGTACCAGGGAAAGGGTGAGGAGGGCGACCGCCTTGAGCAT‑AAAGACGATCGCCAGGATTAATG‑TCGAAACACCGGGTTATGTGGGTATGCCa > 2:203637/1‑239 (MQ=255)
ccGATTTCCTC‑GGTCTTCTT‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCGCGACCGCCTTGATCAT‑AAAGACGATCGCCAGGATTAATG‑TCGAAACGCCGGATTATGTGGTTATGCCATTTTc < 1:90846/239‑1 (MQ=255)
ctA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCGCGACCCCCTTGATCAT‑AAAGACGATCGCCAGGATTAATG‑TCGAAACGCCGGCTTATGTGGTTATGCCATTTTTCCGGGGTTTTCGTTTTg > 2:842637/1‑239 (MQ=255)
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CTTTATTCAGGTTGCCCATGTATTGGGGGTATTGCTGACCCTCGTGCTGGTTATATTCACGTCAGTTATCGGTATGTCACTGGTACGTAACCAGGGCTTTAAGAATTTCGTGCTGATGCAGCAAAAAATGGCGGCGGGTGAAAACCCAGCG‑GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCTGGTTTGCTGCTTTTATTACCGGGCTTTTTTACCGACTTCCTC‑GGTCTTCTA‑CTTTTATTGCCGCCGGTGCAAAA‑GCATCTGACAGTGA‑AGTTGATGCCGCATTTGCGCTTTTCTCGCATGCCTGGCGGC‑GGTTTTAGCG‑CCGGGACCGGTGGCGGTAATACTTTTGATGGTGAGTACCAGCGAAAGGATGATGAGCGCGACCGCCTTGATCAT‑AAAGACGATCGCCAGGATTAATG‑TCGAAACGCCGGATTATGTGGTTATGCCATTTTCCGGCGTTTTTCGTTTTG > NC_000913/4368721‑4369194
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
