Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F17 I0 R1 115 121.7 2441348 96.4% 2353459 231.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,366,235 C→A 11.9% L180L (CTG→CTT)  dcuA ← C4‑dicarboxylate antiporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,366,2350CA11.9% 341.1 / 2.5 117L180L (CTG→CTT) dcuAC4‑dicarboxylate antiporter
Reads supporting (aligned to +/- strand):  ref base C (68/32);  new base A (2/14);  total (70/47)
Fisher's exact test for biased strand distribution p-value = 3.55e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.57e-01

Only 100 of 121 total aligned reads displayed.

GTGGTGTTCATCAGCGGTTTTTCAACCAGACCCATGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCAAGGTTTAACGCCTTGTTCCTTCGCAACTTCAGCGATAACTGGCAGTGTCGCCAGAGAGATGTTGCCAGTACCA  >  NC_000913/4365999‑4366469
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                          
gtggtgTTCATCAGCGGTTTTTCAACCAGACCCATGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGACAGTCAGAGA‑GTTTGGAGTTGACCAGCATA‑GGGCCCAGGAAGGCAAACACCAg                                                                                                                                                                                                                                          >  2:282048/1‑239 (MQ=255)
     gtTCATCAGCGGTTTTTCAACCAGACCCATGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAAcc                                                                                                                                                                                                                                      >  1:621805/1‑238 (MQ=255)
      ttCATCAGCGGTTTTTCAACCAGACCCATGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGGACAGCATA‑GTGACCAGGAAAGACATCACCAGAACCg                                                                                                                                                                                                                                     >  2:1032967/1‑238 (MQ=255)
              cGGTTTTTCAACCAGACCCATGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGCTTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGC‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAggg                                                                                                                                                                                                                            >  1:189067/1‑239 (MQ=255)
              cGGTTTTTCAACCAGAACCATGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCCGAGA‑GTTTGGAGTTGAACCGCATA‑GTGACCAGGAAGGAAATCACCAGAACCGGCAGCAggg                                                                                                                                                                                                                            >  2:160630/1‑239 (MQ=255)
                gTTTTTCAACCAGACCCATGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCATGAACAGACAGACGGACTTTTTTGCACCGGATTTTATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGATA‑GTTTGGAGTTGCACAGCATA‑GTGACCAGGAAGGACGTGACCAGCACCGCCAGCAggggg                                                                                                                                                                                                                          >  2:266001/1‑237 (MQ=255)
                  ttttCAACCAGACCAGTGGTGGGGCTGTTAATTATGTGAAGCAAAACCACCCCACTGCCGCCCATCAGGAACAGCCAGAGGGACGTTTTGGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTCCCAGACGCTTGCGATAAATCGGACCGTCAGAGA‑TTTTGGAGTGGAACAGCATA‑GTGACCAGGAGGGATATCACCAGAACCGCCAGCAGGGTgg                                                                                                                                                                                                                         <  2:688766/238‑1 (MQ=255)
                     acAACCAGACCCATGCTTGGGGTGTTGATGATTGCATAGATAACCACGCTAACTACGCCCAGCAGGAACAGCCAGACGGGCGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCCCCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGAAAAATCGGACCGTCAGAGA‑GTTTGGAGTTGACCAGCAGA‑GTGACCAGGAAGGACATCACAAGAACCGCCAGCAGGGTGGACgg                                                                                                                                                                                                                     <  2:803637/238‑1 (MQ=255)
                       acccAGCCCCATGTGTGGCGTGTTGATGATTGCAGAGAAACCCACCCCAAATGCGCCCAGCAGGAACATCCGGACGGACGTTTTTGCACCGGTTTTGATTTCAATCTGCTTTTCGCCGC‑GCAGTTCAACAA‑GGCCCTCTCCCAGACTCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATG‑GTGACCAGGAGGGACATCACCAGAACCGCCAGCAGGGTGGACGGGa                                                                                                                                                                                                                   <  2:841221/237‑1 (MQ=255)
                        aCCAGACCCATGCTTGGGTTGTGGATGATTGCATAGATACCCAGGCCAACTAGGCCCAGCAGCAACAGCCAGACGGCCTTTTTTGCCCCGGATTTGTTTTCAATCTGCTTTTCCCCGC‑GCATTTCAACCA‑GGCCCTCTTCCAGACGTTTGCGAAAAATCGGATCGTCAGAGA‑GTTTGGATTTGAACAGCATA‑GTGACCAGGAAGGACATCACAAGAACCGCCAGCAGGGTGGACGGGAt                                                                                                                                                                                                                  <  2:584043/239‑1 (MQ=255)
                             aCCCATGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGATCAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAAACGCCAGCAGGGTGAACGGGATGAcc                                                                                                                                                                                                              >  2:373672/1‑238 (MQ=255)
                                        ggCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGa                                                                                                                                                                                                  >  1:780178/1‑239 (MQ=255)
                                         gCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGac                                                                                                                                                                                                 >  2:954243/1‑238 (MQ=255)
                                         ccggtggaggtatGCTTAGATACCCCCGCCAACGAGGCCCAGGTGGAACAGCAGGAGGGACGTTTTTGCCCCGTATTTGTTTCAAATCGTCTTGTCACTGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGAGGTTTGGGAAAAAGGGGAGCGCCAGAGA‑GTTTGGAGTGGAACGGCATG‑GTGCCAGGGAGGGACATCACTAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGa                                                                                                                                                                                                  <  2:568288/226‑1 (MQ=255)
                                             ttGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAg                                                                                                                                                                                             >  1:1204002/1‑239 (MQ=255)
                                             ttGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAg                                                                                                                                                                                             >  2:678270/1‑239 (MQ=255)
                                             ttGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAg                                                                                                                                                                                             >  1:1039316/1‑239 (MQ=255)
                                             ttGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAg                                                                                                                                                                                             >  1:198097/1‑239 (MQ=255)
                                              tgatgaTTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAgg                                                                                                                                                                                            >  1:9199/1‑239 (MQ=255)
                                              tgatgaTTGCATAGATAACCACGCATACTCCGCCCAGAAGGAACAGCCAGACGGACGTTTTTGCCCCGTATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTCCAACCA‑GGCCCTTTTCCAGACTCTGGCGATAAAGCGGATCGCAAGAGA‑GTTTGGGGTTGAACGGCATG‑GTGCCCAGGAAGGACATCACCAGATCCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAg                                                                                                                                                                                             <  2:1204002/238‑1 (MQ=255)
                                              tgagtatTGCATAGATAACCACGCAACCTCAGCCCGGCAGGACCAGCCAGCCGGACGTTTTCGCACCGGATTTGTTTTCAACCTGTTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGAGGCTTGCGAAAAATCGGATCGCCAGAGA‑GTTTGGAGTTGAACAGAATG‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAgg                                                                                                                                                                                            <  2:725797/234‑1 (MQ=255)
                                                    ttGCATAGATAACCCGCCCAACTACGCCCAGCAGGAACAGCCGGACGGACGTTTTTGCACGGGATTTGATTTCAATCTTCTTTTCACCGG‑GCAGTTCAACCA‑GGCCCGCTTCAAGACGCTTGCGATAAAGCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGAAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCt                                                                                                                                                                                       <  1:414892/238‑1 (MQ=255)
                                                    ttGAATAGAAACCCACACAAACTACGCCCCGCAGGAACAGCCAGACTGACGTTTTTGCCCCGGATTTGATTTCAATCTGTTTTTCCCCGC‑GCAGTTCAACCA‑GCCCCTCTTCCAGACGCTTGCGAAAAATCGGATCGTCAAAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACCTCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCt                                                                                                                                                                                       <  1:1186379/238‑1 (MQ=255)
                                                     tGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGa                                                                                                                                                                                     >  1:1084573/1‑239 (MQ=255)
                                                       cATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTgct                                                                                                                                                                                    >  1:625763/1‑236 (MQ=255)
                                                       cATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGAt                                                                                                                                                                                    >  1:1052265/1‑238 (MQ=255)
                                                       cATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGACCAGATGGAGGTAGCTGAt                                                                                                                                                                                    >  1:514450/1‑238 (MQ=255)
                                                            ttAACCCCGCCACCTCCCCCAACAAGGAACAGCCACCGGGACTTTTTGGCCCCGG‑TTTGGATTCAAACTGGTTTTCCCCGCGGCAGTACAACCA‑GGCCCTCTTCCAGACGCTGGGGAAAAACCGGACGGCCAGAGA‑GTTGGGAGTGGAACAGCATA‑GTGACCAGGAAGGACACCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCa                                                                                                                                                                                <  2:24268/236‑1 (MQ=255)
                                                            aTAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATg                                                                                                                                                                              >  1:70847/1‑239 (MQ=255)
                                                            aTAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATg                                                                                                                                                                              <  1:678270/239‑1 (MQ=255)
                                                             tAACCCCGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTCCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑TTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCAt                                                                                                                                                                               <  1:160630/237‑1 (MQ=255)
                                                               aCCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGAAGCTTGCGATACATCCGATCGTCAGAGC‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGCAGGACATCACCAGAAACGCCACAAGGGTGGACGGGATGACCCCGGCGAGCAGATGGAGGTAGCTGATGCCATgc                                                                                                                                                                             >  2:115935/1‑236 (MQ=255)
                                                               aCCACGCCAACTACGCCCAGCAGGAACAGACAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTCGGAGTTGATCAGCATA‑GGGACCAGAAAGGAAATCACAAGAACCGCCAGCAGGGAGGACGGGATGACAACGGAGAGCAGCTGGAGGTAGCCGACGcaagaac                                                                                                                                                                            >  2:1122054/1‑232 (MQ=255)
                                                                 cACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCt                                                                                                                                                                          >  1:1136166/1‑238 (MQ=255)
                                                                 cACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCt                                                                                                                                                                          >  1:479915/1‑238 (MQ=255)
                                                                   cGCCACCTACGCCCAGCAGGAACAGCCAGACGGCCGTTGTCGAGCCGCATTTGATTCCAATCTGCTTTTCACCGC‑GCATTCCAGCCA‑GGCCTTCTTCAAGACGCTTGCGATAAACCGGATGGTCAGAGA‑GTTGGGAGGTGAGCGGAATA‑GTTACCAGGAAGAACACCCACAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTcc                                                                                                                                                                       <  1:645894/239‑1 (MQ=255)
                                                                      cAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCa                                                                                                                                                                      >  1:24268/1‑237 (MQ=255)
                                                                      cAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCAt                                                                                                                                                                     >  2:1038093/1‑238 (MQ=255)
                                                                       aaCTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAAAAGAATA‑GTGACCAGGAAGGACATCCCCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCa                                                                                                                                                                   <  1:187523/239‑1 (MQ=255)
                                                                            cGCCCAGAAGGACCAGCCAAGTGGCGTTTTTTGGACCGAATTGGATTACAAGCGGCTTTCCACCGC‑GCAGTTAAACCG‑GGCCTTCTCCCAACCTCTTGGGATAAATGGGATGGCAAGAGA‑GTTTGGAGTTGAACAGCAGA‑GTGACCAGGAGGGACATCACAAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGaa                                                                                                                                                              <  2:788573/239‑1 (MQ=255)
                                                                              cccAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAg                                                                                                                                                             >  1:278369/1‑238 (MQ=255)
                                                                                  gcagGAACAGCCAGACGGACGTTTTTGCACCAGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACAAGAACCGCCAGCAGGGTGGACGGGACGACCAGGGGGAGCAGAGGGAGGTAGCTGATGCCATGACCTTCCATCACAGCAGCCATg                                                                                                                                                        >  2:774494/1‑239 (MQ=255)
                                                                                    agGACCAGGCCGACGGGAGTTTTTGCCCCGTATTTGATTTCAATCTTCTTTCCACCGG‑TCATTTAAACAG‑TGCCTTCTTCCAGACGCTTGCGATAAATCGGATCGACAGAGA‑GTTGGGAGTGGAACAGCATA‑GGGACCAGGAAGGACATCACAAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACAt                                                                                                                                                         <  2:528762/236‑1 (MQ=255)
                                                                                               aacgtacgtTTTTCCACCGGATTTTATTTAAACCTGCTTTTCACCGC‑GACGTTAAACCA‑GGCCCGCTCCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTAGAACAGCATA‑GTGACCGGGAGGGACACCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCg                                                                                                                                           <  1:517467/238‑1 (MQ=255)
                                                                                                gcggacgTTTTTGACCCGGTTTGGTTTTAAACCGGCTTGTCCCCGC‑GAAGTTCAACGA‑GCCCCTATTCCGGACGCTGGCGAAAAATCGGATCGGCAGAGA‑GTTTGAGGTGGAACAGACTG‑GGGACCAGAAAGGAAATCACAAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCg                                                                                                                                           <  1:618225/237‑1 (MQ=255)
                                                                                                acggacgTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGcc                                                                                                                                            >  1:593854/1‑237 (MQ=255)
                                                                                                 cggacgTTTTTGCACCGTATTTGATGTAAATCGCTTTTTCACCGC‑GCAGTTCACCCA‑GGCCCTCTTCCAGCCGCTTGCGAAAAATCGAAGCGGCAGAGA‑GTTGGGAGTGGAACAGCATA‑GGGACCAGGAAGGACACCACAAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCt                                                                                                                                         <  2:1052265/239‑1 (MQ=255)
                                                                                                 cggacgTTTTTGCACCGGTTTTGATTTCAACTTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCCCTTCCAGACGTTTGGGATAAACCGGCTCGTCAGAGA‑GTTGGAAGTTGAACAGCATA‑GTGACCAGGAAGGACATCCCCAAAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCt                                                                                                                                         <  1:1003582/239‑1 (MQ=255)
                                                                                                         tttGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGC‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTg                                                                                                                                  >  1:969137/1‑238 (MQ=255)
                                                                                                                cGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCcagca                                                                                                                                                                                                                               >  1:762338/1‑138 (MQ=255)
                                                                                                                             aaTCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCaa                                                                                                                >  2:793765/1‑236 (MQ=255)
                                                                                                                               tCTGCTTTTCACCGC‑GCATTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGAATA‑GTGACCAGAAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTgc                                                                                                           <  1:1032967/239‑1 (MQ=255)
                                                                                                                                cttcTTTCCACCGC‑GCAGTCCAACCA‑GGCCGTCTTCGAAGCGCGTGCGATAAATCGGAGCGTCAGAGG‑GTTTGGGGTTGAACAGCAAG‑GGGACCAGGAAGGAAATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTgcg                                                                                                          <  2:1215872/236‑1 (MQ=255)
                                                                                                                                    tttcCACCGC‑GCAGTTCAACCA‑GGCCCTCTGCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGCCAAGGAAGGACACCACCAAAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGa                                                                                                      <  1:264425/239‑1 (MQ=255)
                                                                                                                                     tttgccccggacacttCAGCCA‑GGCCCGCTGACAGACGTATGCGATAAATAGAACCCTCAGAGA‑GTTTGGAGGTGAACAGCGTA‑GAGAACAGGAAGGACAGCACAAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACAGGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGa                                                                                                      <  2:424216/225‑1 (MQ=255)
                                                                                                                                       gccccGC‑GCAGTCAAACGA‑GGCCATTTGCGAGACGCTTGATATAAATCGAATCGAAAGAGA‑TTTGGGAGTTGAGAAACATA‑GTGACCGGGAAGGAAACCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATAc                                                                                                   <  2:629087/236‑1 (MQ=255)
                                                                                                                                       ccACCGC‑GCAGTTCAACCA‑GGCCGCCTACCAGACGCTGGCGATAAAGCGGAGCGTCAGAGA‑GTGTGGAGTTGAAAAGCATA‑GGAACCAGAAAGGACATCACCAGACCCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATAc                                                                                                   <  2:445001/238‑1 (MQ=255)
                                                                                                                                       caaCCGC‑GCAG‑TCAAGCACGGCCCTCTTCCAGACGCTTGGGATAAAGCGAGCCGCCAGAGA‑GTTTGGAGTGGAGCGGAAGA‑GGGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATa                                                                                                    <  2:625763/236‑1 (MQ=255)
                                                                                                                                         cccGC‑GCAGTTCACCCA‑GGCCCTCTCACATGTGCTTGCGAAAACTCGGAGCGCAGGAGA‑GTTTGGAGTGAAAAAGCAGA‑GTGCCCAGGAAGGACACCACAAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCa                                                                                                 <  1:33070/238‑1 (MQ=255)
                                                                                                                                         aCCGC‑GCAGTTAAACCA‑GGCACTCTTCCAGACGCTTGCGATAAATAGGATCGTCAGAGA‑GTTTGGAGTTGAACAGAATA‑GTGACCAGGAAGGACATCACCAGAACCGCACGCAGGGTGGACGGGATGACCACGGAGAGCAGCTGGAGGTAGCTGATGCCATGACCTTCCATCACGGACGACATGTAACCCACTCCCGCTGAGATGGGCCATGCGGTGATCGCCATCTGCGCGGATccc                                                                                                  >  2:3690/1‑238 (MQ=255)
                                                                                                                                         aCCGC‑GCAGTCAAACGA‑GGCCCTCTGCAGGCGGCTTGCGATAAAGGGGAGCGTCAAAAG‑GTTTGGATTTGAACAGAATA‑GTGACCAGGAGGGACACCACAAGAGCCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCa                                                                                                 <  1:647004/239‑1 (MQ=255)
                                                                                                                                          tcctagcagtaacaCCA‑GACCCTTGTCCAGACGCTTTCTAAAACAGGGGTCTTCAGAAA‑GTTGGGAGTGAAACAGGATG‑GTGACCAGGAAGCCAACCAACAACGCCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCa                                                                                                 <  2:1075896/226‑1 (MQ=255)
                                                                                                                                           cgc‑gCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATAcc                                                                                                  >  1:990851/1‑236 (MQ=255)
                                                                                                                                            cgcgaatgcgagccA‑GGCCCTTTGCAGGCCGTTGGCAATAAATGGGATCGTAGGGGG‑GTTGGGAGTGGAAAAGCATA‑GGGCCAGGGAGGGACATCCACAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACt                                                                                               <  2:9199/227‑1 (MQ=255)
                                                                                                                                                    ccAACCA‑GGCCCTCTTCCAGACGCTTGCAATAAATCGGATCGTCAGAGA‑TTTTGGAGTTGAACAGAATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGa                                                                                       <  1:896139/238‑1 (MQ=255)
                                                                                                                                                        ccA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGc                                                                                   >  2:744166/1‑239 (MQ=255)
                                                                                                                                                         cA‑GTCCCTTTTCAAAACGTTTGGAATAAATCTGACCATCA‑AGAGGTTGGGAGTTGAACAG‑ATAGGTGACCAGGAAGGACACCACCAGGACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCg                                                                                  <  2:51118/239‑1 (MQ=255)
                                                                                                                                                         cA‑GGCCCTCTTCCAGGCGTTTGGGATAAATCGGATCCTCAAAGA‑GTTTGGAGTTGAACGGCATG‑GGGCCGAGAAAGGACACCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCg                                                                                  <  2:1039316/239‑1 (MQ=255)
                                                                                                                                                              cccTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCCGCAGGGCGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACg                                                                              >  1:29500/1‑239 (MQ=255)
                                                                                                                                                              cccTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACg                                                                              >  1:1150537/1‑239 (MQ=255)
                                                                                                                                                              cccTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGAGCGGATACCACTGCAGTAGCAAGCGGACg                                                                              >  2:213002/1‑239 (MQ=255)
                                                                                                                                                              cccTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGGGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACg                                                                              >  1:704924/1‑239 (MQ=255)
                                                                                                                                                              cccTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGAGGTGATCGCAATCTGCGCGGATACCCCTGCAGTAGGCAGCGGACg                                                                              >  2:896139/1‑239 (MQ=255)
                                                                                                                                                                 tctcCCAGCCTCTGGCGAAAATTCGGTTGGCCGGAGA‑GTTTGGAGTTGAACAGCATG‑GGGACCAGGAAGGACTTCACAAGAGCCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCa                                                                           <  1:954243/239‑1 (MQ=255)
                                                                                                                                                                 cttccacaacgtttcggATAAAACGGAGCGCTAGAGA‑GTTGGGAGGGGAACCGAAGA‑GTGACCAGGAAGGACATCACAAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTTATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCa                                                                           <  2:201902/223‑1 (MQ=255)
                                                                                                                                                                   ttCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCAAg                                                                         >  1:577560/1‑239 (MQ=255)
                                                                                                                                                                        gACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCAAGGTTTa                                                                    >  1:501360/1‑239 (MQ=255)
                                                                                                                                                                          cgtttccGAAAAATGGGAGCCTCAGAGA‑GTTTGGAGTTTAAGAGCATA‑GCGACCAGGAAGGACATCAAAAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCAAGGTTTa                                                                    <  1:663863/231‑1 (MQ=255)
                                                                                                                                                                           gCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGCCGGCAAGGTTTAAc                                                                  >  1:1122563/1‑238 (MQ=255)
                                                                                                                                                                             ttGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGCACAGCATA‑GGGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGCTGACCAGTGAGAGCAAATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGTCGCTGAGATTGGCGATTCGGAGATCGCAATCTGAGCAGAGACCCCTGCAGTAGACAGAGGACGGCACGGTTTCACg                                                                 >  2:15714/1‑237 (MQ=255)
                                                                                                                                                                             ttGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCAAGGTTTAACg                                                                 >  1:154552/1‑237 (MQ=255)
                                                                                                                                                                             ttGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCAAGGTTTAACg                                                                 >  1:168419/1‑237 (MQ=255)
                                                                                                                                                                               gCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCAATGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGCTACCACTGCAGTAGACAGCCGGCGGCAAGGTTTAACGCCtt                                                             >  2:824926/1‑239 (MQ=255)
                                                                                                                                                                                     aaTCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCAAGGTTTAACGCCTTGTTCCt                                                       >  1:1099000/1‑239 (MQ=255)
                                                                                                                                                                                            tCGTCAGAGA‑GTTGGGAGTTGAACAGCAAA‑GGTACAAGGAAGTACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCTCAATCTGCGCTGATACCACTGCAGTAGACAGCGGACGGCAAGGTTTAACGCCTTGTTCCTTCGCaa                                                 <  2:475113/238‑1 (MQ=255)
                                                                                                                                                                                                     gatttgggAGTGTAACAGAGTG‑GTGACAAGGAAGGACATCACCGGAACCTCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCAAGGTTTAACGCCTTGTTCCTTCGCAACTTCAGCg                                         <  1:1019016/232‑1 (MQ=255)
                                                                                                                                                                                                        tttGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCAAGGTTTAACGCCTTGTTCCTTCGCAACTTCAGCGATa                                      >  1:248486/1‑238 (MQ=255)
                                                                                                                                                                                                          tGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGCTGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGCCGGCAAGGTTTAACGCCTTGTTCCTTCGCCCCTTCAGCGCTa                                      >  2:953555/1‑236 (MQ=255)
                                                                                                                                                                                                          tGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCAAGGTTTAACGCCTTGTTCCTTCGCAACTTCAGCGATa                                      >  1:1100707/1‑236 (MQ=255)
                                                                                                                                                                                                                  accaggtaa‑GTTACCAGGAAGGACACCCCCAGATCCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCAAGGTTTAACGCCTTGTTCCTTCGCAACTTCAGCGATAACTGGCAgtgt                           <  1:227908/231‑1 (MQ=255)
                                                                                                                                                                                                                    agtgaagagggACGAGGAGGGAAAGCACAAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCAAGGTTTAACGCCTTGTTCCTTCGCAACTTCAGCGATAACTGGCAgtgt                           <  2:210671/228‑1 (MQ=255)
                                                                                                                                                                                                                             tGAACAGGAAGGACATCACCAGAACCGCCAGAAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGCGATCGCAATCTGCGAGGATACAACTGCAGTAGACAGCGGACGGCAAGGTTTAACGCCTTGTTCATTCGCAACTTCGACGATAAATGGCAGTGTCGCCagagag                 >  2:426459/1‑239 (MQ=255)
                                                                                                                                                                                                                                ccAGAAGGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCAAGGTTTAACGCCTTGTTCCTTCGCAACTTCAGCGATAACTGGCAGTGTCGCCAGAGAGAt               <  1:653841/238‑1 (MQ=255)
                                                                                                                                                                                                                                  aggaaggaCATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCAAGGTTTAACGCCTTGTTCCTTCGCAACTTCAGCGATAACTGGCAGTGTCGCCAGAGAGATGtt            >  1:919291/1‑239 (MQ=255)
                                                                                                                                                                                                                                  aggaaggaCATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCAAGGTTTAACGCCTTGTTCCTTCGCAACTTCAGCGATAACTGGCAGTGTCGCCAGAGAGATGtt            >  1:354347/1‑239 (MQ=255)
                                                                                                                                                                                                                                     aagaaaaccacaAGGACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTGCCATCACGGAAGACATGTAAACCCCTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCAAGGTTTAACGCCTTGTTCCTTCGCAACTGCAGCGATAACTGGCAGTGTCGCCAGAGAGATGTTGc          <  2:473276/230‑1 (MQ=255)
                                                                                                                                                                                                                                          acaccccAGAGCCGCCAGCAGGGTGGACGGGAGGACCACGGAGAGCAGATGGAGGTAGCTGATGCCAGGACCTGCCATCACGGACGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCAAGGTTTAACGCCTTGTTCCTTCGCAACTTCAGCGATAACTGGCAGTGTCGCCAGAGAGATGTTGCCAGTa     <  2:621805/233‑1 (MQ=255)
                                                                                                                                                                                                                                           aTCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCAAGGTTTAACGCCTTGTTCCTTCGCAACTTCAGCGATAACTGGCAGTGTCGCCAGAGAGATGTTGCCAGTAcc   >  1:221692/1‑239 (MQ=255)
                                                                                                                                                                                                                                               ccAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCaa                                                                          >  2:15677/1‑164 (MQ=255)
                                                                                                                                                                                                                                               ccAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCaa                                                                          <  1:15677/164‑1 (MQ=255)
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                          
GTGGTGTTCATCAGCGGTTTTTCAACCAGACCCATGCTTGGGCTGTTGATGATTGCATAGATAACCACGCCAACTACGCCCAGCAGGAACAGCCAGACGGACGTTTTTGCACCGGATTTGATTTCAATCTGCTTTTCACCGC‑GCAGTTCAACCA‑GGCCCTCTTCCAGACGCTTGCGATAAATCGGATCGTCAGAGA‑GTTTGGAGTTGAACAGCATA‑GTGACCAGGAAGGACATCACCAGAACCGCCAGCAGGGTGGACGGGATGACCACGGAGAGCAGATGGAGGTAGCTGATGCCATGACCTTCCATCACGGAAGACATGTAAACCACTGCCGCTGAGATTGGCGATGCGGTGATCGCAATCTGCGCGGATACCACTGCAGTAGACAGCGGACGGCAAGGTTTAACGCCTTGTTCCTTCGCAACTTCAGCGATAACTGGCAGTGTCGCCAGAGAGATGTTGCCAGTACCA  >  NC_000913/4365999‑4366469

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A