mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 343,444 | A→G | 20.5% | G187G (GGA→GGG) | yahK → | broad specificity NADPH‑dependent aldehyde reductase, Zn‑containing |
| RA | 360,362 | T→G | 17.6% | V124G (GTG→GGG) | cynX → | putative cyanate transporter |
| RA | 433,649 | T→G | 25.8% | G65G (GGT→GGG) | ribD → | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
| RA | 469,190 | T→C | 4.0% | F107S (TTT→TCT) | mdlA → | putative multidrug ABC transporter ATPase |
| RA | 509,371 | A→C | 17.6% | V670G (GTG→GGG) | copA ← | copper transporter |
| JC | 534,091 | Δ3 bp | 3.1% | coding (176‑178/1782 nt) | gcl → | glyoxylate carboligase |
| RA | 538,370 | C→G | 16.5% | S246R (AGC→AGG) | ybbW → | putative allantoin transporter |
| RA | 599,579 | T→G | 20.0% | V289G (GTG→GGG) | cusA → | copper/silver efflux system, membrane component |
| RA | 628,652 | T→G | 19.1% | G34G (GGT→GGG) | entA → | 2,3‑dihydro‑2,3‑dihydroxybenzoate dehydrogenase |
| RA | 630,153 | T→G | 16.5% | V87G (GTG→GGG) | cstA → | carbon starvation protein involved in peptide utilization, APC peptide transporter family protein |
| RA | 635,148 | G→T | 11.3% | Q77K (CAA→AAA) | ybdM ← | Spo0J family protein, ParB‑like nuclease domain |
| RA | 677,198 | C→T | 3.3% | A163V (GCC→GTC) | ybeR → | uncharacterized protein |
| RA | 718,669 | C→T | 14.0% | E598K (GAA→AAA) | speF ← | ornithine decarboxylase isozyme, inducible |
| RA | 901,192:1 | +G | 2.9% | coding (343/669 nt) | artM ← | arginine ABC transporter permease |
| RA | 954,374 | C→G | 23.5% | P31P (CCG→CCC) | focA ← | formate channel |
| RA | 981,253 | T→G | 21.0% | G69G (GGT→GGG) | ldtD → | murein L,D‑transpeptidase |
| RA | 989,890 | T→G | 22.2% | D156A (GAC→GCC) | pncB ← | nicotinate phosphoribosyltransferase |
| RA | 989,945 | A→G | 20.8% | S138P (TCA→CCA) | pncB ← | nicotinate phosphoribosyltransferase |
| RA | 1,130,379 | A→C | 15.2% | V162G (GTA→GGA) | flgA ← | assembly protein for flagellar basal‑body periplasmic P ring |
| RA | 1,137,238 | T→G | 17.5% | V322G (GTA→GGA) | flgI → | putative flagellar basal body protein |
| RA | 1,196,305 | C→T | 90.6% | R395C (CGT→TGT) | icd → | isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase |
| RA | 1,239,823 | T→G | 25.2% | G315G (GGT→GGG) | dadX → | alanine racemase, catabolic, PLP‑binding |
| RA | 1,239,840 | A→G | 12.0% | E321G (GAG→GGG) | dadX → | alanine racemase, catabolic, PLP‑binding |
| RA | 1,282,677 | T→G | 14.6% | G938G (GGT→GGG) | narG → | nitrate reductase 1, alpha subunit |
| RA | 1,308,861 | T→C | 3.4% | L25P (CTT→CCT) | yciY → | uncharacterized protein |
| RA | 1,383,217 | A→C | 13.6% | F249V (TTT→GTT) | ycjW ← | LacI family putative transcriptional repressor |
| RA | 1,466,336 | C→G | 7.0% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,466,345 | T→C | 7.6% | pseudogene (954/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,513,778 | T→G | 13.8% | V321G (GTG→GGG) | ydcT → | putative ABC transporter ATPase |
| RA | 1,616,757 | T→A | 13.9% | V332E (GTA→GAA) | yneK → | uncharacterized protein |
| RA | 1,739,952 | G→T | 12.8% | L14F (TTG→TTT) | ydhC → | putative arabinose efflux transporter |
| RA | 1,812,041 | A→G | 16.0% | M370V (ATG→GTG) | ydjN → | putative transporter |
| RA | 1,812,053 | A→G | 13.0% | T374A (ACG→GCG) | ydjN → | putative transporter |
| RA | 1,877,629 | C→T | 20.9% | intergenic (‑97/‑86) | yoaF ← / → yeaP | DUF333 family outer membrane lipoprotein/diguanylate cyclase |
| RA | 1,911,547 | A→G | 14.2% | G424G (GGA→GGG) | yebQ → | putative transporter |
| RA | 2,014,202 | T→C | 16.2% | I325T (ATC→ACC) | fliF → | flagellar basal‑body MS‑ring and collar protein |
| RA | 2,042,644 | A→G | 3.5% | I93V (ATA→GTA) | yodB → | cytochrome b561 homolog |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,185,197 | T→G | 17.2% | T35P (ACC→CCC) | thiM ← | hydoxyethylthiazole kinase |
| RA | 2,395,464 | G→C | 13.8% | A144G (GCT→GGT) | nuoJ ← | NADH:ubiquinone oxidoreductase, membrane subunit J |
| RA | 2,459,223 | T→C | 23.1% | G415G (GGA→GGG) | fadI ← | beta‑ketoacyl‑CoA thiolase, anaerobic, subunit |
| RA | 2,464,497 | T→A | 12.9% | Y170F (TAC→TTC) | mlaA ← | ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component |
| RA | 2,525,237 | G→T | 13.4% | W38L (TGG→TTG) | yfeN → | putative outer membrane protein |
| JC | 2,765,454 | (TATGGCAC)6→5 | 8.4% | intergenic (‑303/+50) | yfjL ← / ← yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage, uncharacterized protein |
| RA | 2,793,673 | T→G | 13.8% | V314G (GTG→GGG) | gabT → | 4‑aminobutyrate aminotransferase, PLP‑dependent |
| RA | 2,826,348 | C→G | 15.0% | G173G (GGC→GGG) | srlA → | glucitol/sorbitol‑specific enzyme IIC component of PTS |
| RA | 2,826,408 | G→A | 14.6% | E7K (GAA→AAA) | srlE → | glucitol/sorbitol‑specific enzyme IIB component of PTS |
| RA | 2,828,504 | T→G | 16.9% | V257G (GTG→GGG) | srlD → | sorbitol‑6‑phosphate dehydrogenase |
| RA | 2,859,432 | T→G | 18.7% | V781G (GTG→GGG) | mutS → | methyl‑directed mismatch repair protein |
| RA | 3,026,899 | A→C | 14.2% | N379T (AAC→ACC) | guaD → | guanine deaminase |
| RA | 3,164,361 | A→C | 35.0% | G537G (GGT→GGG) | parC ← | DNA topoisomerase IV, subunit A |
| RA | 3,206,434 | C→A | 15.6% | intergenic (‑180/‑27) | ttdR ← / → ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,436 | G→A | 24.2% | intergenic (‑182/‑25) | ttdR ← / → ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,464 | A→G | 16.4% | M2V (ATG→GTG) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,469 | C→G | 19.8% | S3R (AGC→AGG) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,485 | C→A | 20.9% | Q9K (CAG→AAG) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,504 | C→A | 23.1% | T15K (ACA→AAA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,512 | G→T | 12.8% | V18F (GTC→TTC) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,277,497 | G→A | 19.1% | V55M (GTG→ATG) | yhaV → | toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system |
| RA | 3,460,747 | T→A | 13.6% | G311G (GGT→GGA) | gspF → | general secretory pathway component, cryptic |
| RA | 3,499,692 | G→T | 19.9% | intergenic (+79/‑216) | yhfL → / → frlA | small lipoprotein/putative fructoselysine transporter |
| RA | 3,536,133 | G→C | 12.7% | R150R (CGC→CGG) | ompR ← | response regulator in two‑component regulatory system with EnvZ |
| RA | 3,536,160 | A→C | 17.1% | G141G (GGT→GGG) | ompR ← | response regulator in two‑component regulatory system with EnvZ |
| RA | 3,548,935 | G→C | 8.6% | G378G (GGC→GGG) | malQ ← | 4‑alpha‑glucanotransferase (amylomaltase) |
| RA | 3,560,493 | G→A | 5.2% | pseudogene (111/149 nt) | glpR ← | pseudogene, DNA‑binding transcriptional repressor,regulator, Energy metabolism, carbon: Anaerobic respiration, repressor of the glp operon |
| RA | 3,569,241 | A→C | 12.5% | R29R (CGT→CGG) | glgC ← | glucose‑1‑phosphate adenylyltransferase |
| RA | 3,598,925 | A→C | 11.5% | F245V (TTT→GTT) | livJ ← | branched‑chain amino acid ABC transporter periplasmic binding protein |
| RA | 3,615,864 | A→C | 17.2% | T209P (ACC→CCC) | nikB → | nickel ABC transporter permease |
| RA | 3,661,662 | A→G | 12.1% | E417G (GAG→GGG) | mdtF → | anaerobic multidrug efflux transporter, ArcA‑regulated |
| RA | 3,665,701 | C→A | 100% | A37S (GCG→TCG) | gadX ← | acid resistance regulon transcriptional activator, autoactivator |
| RA | 3,680,184 | T→G | 10.0% | V256G (GTG→GGG) | kdgK → | 2‑dehydro‑3‑deoxygluconokinase |
| RA | 3,731,719 | C→A | 20.9% | A197E (GCA→GAA) | xylF → | D‑xylose transporter subunit |
| RA | 3,733,273 | T→G | 15.7% | G358G (GGT→GGG) | xylG → | D‑xylose ABC transporter dual domain ATPase |
| RA | 3,760,381 | T→C | 15.4% | S290G (AGT→GGT) | selA ← | selenocysteine synthase |
| RA | 3,760,383 | A→C | 35.4% | V289G (GTG→GGG) | selA ← | selenocysteine synthase |
| RA | 3,781,965 | A→C | 21.6% | G199G (GGT→GGG) | cysE ← | serine acetyltransferase |
| RA | 3,782,918 | T→C | 34.8% | D248G (GAT→GGT) | gpsA ← | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| RA | 3,783,211 | T→A | 11.6% | L150F (TTA→TTT) | gpsA ← | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| MC JC | 3,815,858 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,862,660 | T→G | 27.2% | pseudogene (943/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,862,672 | G→A | 25.9% | pseudogene (931/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,864,874 | T→C | 7.4% | I467V (ATT→GTT) | yidE ← | putative transporter |
| RA | 3,875,536 | G→A | 19.8% | A34T (GCA→ACA) | yidX → | putative lipoprotein |
| RA | 3,895,533 | G→A | 8.7% | A359V (GCT→GTT) | adeP ← | adenine permease, high affinity, adenine:H+ symporter |
| RA | 3,895,555 | T→C | 12.6% | M352V (ATG→GTG) | adeP ← | adenine permease, high affinity, adenine:H+ symporter |
| RA | 3,904,285 | C→A | 11.6% | A438S (GCC→TCC) | bglF ← | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component |
| RA | 3,947,830 | T→G | 15.9% | N46T (AAC→ACC) | hdfR ← | flhDC operon transcriptional repressor |
| RA | 3,977,526 | G→T | 18.5% | *417L (TGA→TTA) M1M (ATG→ATT) † |
wzxE → wecF → |
O‑antigen translocase TDP‑Fuc4NAc:lipidIIFuc4NAc transferase |
| RA | 3,977,592 | C→T | 14.7% | F23F (TTC→TTT) | wecF → | TDP‑Fuc4NAc:lipidIIFuc4NAc transferase |
| JC | 4,001,644 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,003,508 | T→G | 21.6% | T224P (ACC→CCC) | rarD ← | putative chloramphenical resistance permease |
| RA | 4,088,437 | A→G | 9.4% | V473A (GTC→GCC) | frvR ← | putative frv operon regulator, contains a PTS EIIA domain |
| RA | 4,094,414 | T→G | 3.6% | intergenic (‑143/+308) | rhaD ← / ← rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase |
| RA | 4,099,984 | A→C | 12.4% | C181G (TGC→GGC) | rhaT ← | L‑rhamnose:proton symporter |
| RA | 4,100,810 | Δ1 bp | 4.4% | coding (2/621 nt) | sodA → | superoxide dismutase, Mn |
| RA | 4,115,217 | T→C | 11.1% | E121G (GAG→GGG) | glpX ← | fructose 1,6‑bisphosphatase II |
| RA | 4,145,049 | T→C | 11.0% | Y352Y (TAT→TAC) | pflD → | putative glycine radical domain‑containing pyruvate formate‑lyase |
| RA | 4,145,064 | A→C | 17.5% | L357F (TTA→TTC) | pflD → | putative glycine radical domain‑containing pyruvate formate‑lyase |
| RA | 4,145,087 | G→C | 12.1% | R365P (CGC→CCC) | pflD → | putative glycine radical domain‑containing pyruvate formate‑lyase |
| RA | 4,151,320 | T→G | 20.7% | H593P (CAT→CCT) | ppc ← | phosphoenolpyruvate carboxylase |
| RA | 4,184,542 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,201,252 | A→C | 10.0% | T230P (ACG→CCG) | yjaH → | DUF1481 family putative lipoprotein |
| RA | 4,201,277 | A→C | 18.8% | G137G (GGT→GGG) | zraP ← | Zn‑dependent periplasmic chaperone |
| RA | 4,326,242 | C→T | 3.4% | intergenic (‑500/+158) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,366,235 | C→A | 11.9% | L180L (CTG→CTT) | dcuA ← | C4‑dicarboxylate antiporter |
| RA | 4,394,309 | A→G | 17.0% | R81R (CGA→CGG) | nnr → | bifunctional NAD(P)H‑hydrate repair enzyme, C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
| RA | 4,394,335 | T→G | 16.3% | V90G (GTC→GGC) | nnr → | bifunctional NAD(P)H‑hydrate repair enzyme, C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
| RA | 4,395,305 | T→G | 13.3% | G413G (GGT→GGG) | nnr → | bifunctional NAD(P)H‑hydrate repair enzyme, C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
| RA | 4,421,193 | A→G | 15.7% | S405G (AGT→GGT) | ulaA → | L‑ascorbate‑specific enzyme IIC permease component of PTS |
| RA | 4,449,046 | T→G | 19.2% | intergenic (+3/+77) | chpB → / ← ppa | toxin of the ChpB‑ChpS toxin‑antitoxin system/inorganic pyrophosphatase |
| RA | 4,458,425 | A→C | 10.7% | T156P (ACC→CCC) | pmbA → | putative antibiotic peptide MccB17 maturation peptidase |
| RA | 4,548,865 | C→T | 14.8% | A19A (GCC→GCT) | fimH → | minor component of type 1 fimbriae |
| RA | 4,582,479 | A→C | 14.1% | S191A (TCG→GCG) | hsdM ← | DNA methyltransferase M |
| RA | 4,626,669 | A→C | 14.7% | T253P (ACC→CCC) | radA → | DNA repair protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 583130 | 583901 | 772 | 37 [32] | [32] 34 | [tfaX]–[appY] | [tfaX], [appY] |
| * | * | ÷ | NC_000913 | 1299410 | 1300739 | 1330 | 34 [33] | [33] 34 | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | * | ÷ | NC_000913 | 1978500 | 1979278 | 779 | 37 [33] | [6] 39 | insB1–insA | insB1, insA |
| * | * | ÷ | NC_000913 | 2455613 | 2456146 | 534 | 34 [32] | [33] 36 | [yfcV] | [yfcV] |
| * | * | ÷ | NC_000913 | 3798882 | 3799561 | 680 | 35 [33] | [28] 35 | [waaU]–[waaZ] | [waaU], [waaZ] |
| * | * | ÷ | NC_000913 | 4233765 | 4235409 | 1645 | 34 [32] | [33] 34 | [pgi] | [pgi] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 257908 = | NA (NA) | 121 (1.090) | 73/440 | NT | 99.2% | intergenic (+9/‑768) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | = 1293039 | 1 (0.010) | intergenic (‑117/‑488) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase | |||||
| * | ? | NC_000913 | 458787 = | 24 (0.220) | 76 (0.690) | 54/434 | NT | 76.2% | intergenic (+87/‑101) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | 608011 = | NA (NA) | intergenic (+23/‑54) | hokE/insL1 | toxic polypeptide, small/IS186 transposase | |||||
| * | ? | NC_000913 | = 458799 | 19 (0.170) | 102 (0.940) | 64/432 | NT | 84.5% | intergenic (+99/‑89) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | = 609347 | NA (NA) | intergenic (+170/+112) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_000913 | 1207790 = | 20 (0.180) | 87 (0.850) | 56/408 | NT | 83.8% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 15 (0.150) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 20 (0.180) | 77 (0.750) | 53/408 | NT | 82.1% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 15 (0.150) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1293032 = | 3 (0.030) | 118 (1.060) | 69/440 | NT | 97.5% | intergenic (‑110/‑495) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | = 1979270 | NA (NA) | intergenic (‑55/‑483) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 19 (0.170) | 16/432 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1651548 | NA (NA) | 4 (0.040) | 4/440 | NT | 4.3% | intergenic (+11/‑3) | insD1/intQ | IS2 transposase TnpB,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related/pseudogene, Qin prophage, phage integrase family,Phage or Prophage Related |
| ? | NC_000913 | = 1937140 | 90 (0.810) | coding (489/870 nt) | yebK | putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 32 (0.300) | 30/424 | NT | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | 1979486 = | 0 (0.000) | 51 (0.460) | 33/440 | NT | 100% | intergenic (‑271/‑267) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | 2101749 = | NA (NA) | intergenic (‑5/+146) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 1979489 | 0 (0.000) | 87 (0.780) | 55/440 | NT | 100% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290111 | NA (NA) | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system | |||||
| * | ? | NC_000913 | = 2515612 | NA (NA) | 4 (0.040) | 4/436 | NT | 4.0% | intergenic (+171/+29) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase |
| ? | NC_000913 | 2536308 = | 97 (0.870) | coding (477/510 nt) | crr | glucose‑specific enzyme IIA component of PTS | |||||
| * | ? | NC_000913 | 2771953 = | 55 (0.500) | 6 (0.050) | 6/438 | NT | 9.9% | intergenic (+340/+47) | yfjT/yfjU | CP4‑57 prophage, putative periplasmic protein/CP4‑57 prophage, conserved protein,Phage or Prophage Related |
| ? | NC_000913 | = 2997688 | NA (NA) | intergenic (‑90/+2) | insC1/ygeQ | IS2 repressor TnpA/pseudogene, glycosyl hydrolase family 15, part of T3SS PAI ETT2 remnant | |||||
| * | ? | NC_000913 | = 2771960 | 55 (0.500) | 3 (0.030) | 3/436 | NT | 5.2% | intergenic (+347/+40) | yfjT/yfjU | CP4‑57 prophage, putative periplasmic protein/CP4‑57 prophage, conserved protein,Phage or Prophage Related |
| ? | NC_000913 | 2996361 = | NA (NA) | intergenic (‑3/+9) | ygeO/insD1 | pseudogene, orgA family, part of T3SS PAI ETT2 remnant/IS2 transposase TnpB | |||||
| * | ? | NC_000913 | = 2877906 | 86 (0.770) | 4 (0.040) | 3/426 | NT | 4.8% | intergenic (+290/+661) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | NC_000913 | = 2877949 | 74 (0.690) | intergenic (+333/+618) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | NC_000913 | 3269953 = | 66 (0.590) | 3 (0.030) | 3/416 | NT | 5.0% | intergenic (+353/+261) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| ? | NC_000913 | 3269981 = | 52 (0.500) | intergenic (+381/+233) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component | |||||
| * | ? | NC_000913 | 3438195 = | 118 (1.060) | 4 (0.040) | 4/436 | NT | 3.1% | coding (174/411 nt) | mscL | mechanosensitive channel protein, high conductance |
| ? | NC_000913 | 3438320 = | 135 (1.230) | coding (299/411 nt) | mscL | mechanosensitive channel protein, high conductance | |||||
| * | ? | NC_000913 | 4160851 = | 134 (1.210) | 7 (0.060) | 7/438 | NT | 5.0% | intergenic (‑62/‑272) | sthA/fabR | pyridine nucleotide transhydrogenase, soluble/transcriptional repressor of fabA and fabB |
| ? | NC_000913 | = 4499511 | NA (NA) | intergenic (+10/+83) | insD1/yjgX | IS2 transposase TnpB/pseudogene fragment | |||||
| * | ? | NC_000913 | = 4160857 | 137 (1.230) | 4 (0.040) | 4/438 | NT | 2.8% | intergenic (‑68/‑266) | sthA/fabR | pyridine nucleotide transhydrogenase, soluble/transcriptional repressor of fabA and fabB |
| ? | NC_000913 | 4498183 = | NA (NA) | intergenic (+242/‑90) | intB/insC1 | pseudogene, integrase homology,IS, phage, Tn, Phage‑related functions and prophages, KpLE2 phage‑like element, P4‑like integrase/IS2 repressor TnpA | |||||
| * | ? | NC_000913 | 4345645 = | 110 (0.990) | 3 (0.030) | 3/400 | NT | 2.9% | intergenic (‑86/+36) | yjdF/fumB | DUF2238 family inner membrane protein/anaerobic class I fumarate hydratase (fumarase B) |
| ? | NC_000913 | 4345665 = | 103 (1.020) | intergenic (‑106/+16) | yjdF/fumB | DUF2238 family inner membrane protein/anaerobic class I fumarate hydratase (fumarase B) | |||||