Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F9 I0 R1
|
105 |
139.1 |
2894862 |
97.5% |
2822490 |
224.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,466,579 |
G→C |
11.1% |
pseudogene (1188/2513 nt) |
ydbA → |
pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,466,579 | 0 | G | C | 11.1%
| 247.8
/ 8.5
| 98 | pseudogene (1188/2513 nt) | ydbA | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| Reads supporting (aligned to +/- strand): ref base G (38/46); new base C (8/4); total (46/52) |
| Fisher's exact test for biased strand distribution p-value = 2.21e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.64e-01 |
TAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGG > NC_000913/1466342‑1466814
|
tacgggTGATAATGCCACATCAAACAACAAAGGCAAAGCCACCGTTGACGGCAAAGAGTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTTATGCAGGACGGCGAGCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCgg < 2:94687/235‑1 (MQ=11)
atgaCGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCACCGGTAATAACGGGAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGGATTGATATCACCGGCGACAGCGCAACGGGGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCCTCGGTATCCAGGTTGCCGGCGACCAGCCGGTCGTTaac > 2:285969/1‑239 (MQ=14)
atgaCGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTaac > 1:848321/1‑239 (MQ=255)
atgaCGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTaac > 2:1171691/1‑239 (MQ=255)
agatgCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGCAAAGATGCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGGCAGCGGCGGCGGTCACGGTATTGATATCACAGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTaaca < 2:1133800/235‑1 (MQ=11)
cacaggaaaCAACAACGGCAAAACCACCGTTGACGGCAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCGCCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGaa < 2:438010/232‑1 (MQ=255)
cACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGaa < 2:745563/238‑1 (MQ=255)
cGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGc < 1:640501/239‑1 (MQ=255)
aaaCAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCGCGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGAACCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCgag < 1:413544/238‑1 (MQ=11)
aaaCAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCgaga < 2:958077/239‑1 (MQ=255)
aaaCAACAACGACAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCgag < 1:265756/238‑1 (MQ=255)
tggCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCAGCGGTCACGGTATTGATATCACCGGCGACAGCGCCACGGTGGATGACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATGCAGGTGGACGGCAACCACGCGGATGTTaagccgtctctcatacacatcatc > 2:306067/2‑216 (MQ=11)
cAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCAcc < 1:1193937/238‑1 (MQ=255)
cAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCAcc > 1:1337336/1‑238 (MQ=255)
aaaCCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGTATTATGCACATCACCGAGCCCAAGAGCCGCGGAATACAGGCTGATGGCGACCACTCCGTGGTTAACAACGAAAGCGAGAGCGACGTCACCAAc > 1:105280/1‑239 (MQ=17)
aaaCCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGCCTACAGCCCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCCTCGGTAACCAGGTTGACGGCGACCAGGCGGTTGGTAACAACGAAGGCGAGAGCGCCATCACCAAc > 1:235248/1‑239 (MQ=255)
aaCCCCCGTTGACGGAAAGGATGCCACCGGTTCGAAAATGATAGTTTAGAAGAGATAAGTTATTCAGGACGGCGATCTGGAAGATAGCCGCGGCGGTCACGCTATTGAATTCACTCGCCTCATCGCAACAGTGGATAACAAGGGAACCATGACCGGAACGGCTCCGGGGTCCGTCGGAATCTAGGTTGGCGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCTCCATCTCCAACg < 2:108660/239‑1 (MQ=255)
tGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑Cg < 1:1171691/239‑1 (MQ=255)
gACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCTCAACGGTGGATAACACAGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGATGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCCACGGTGGCAC‑Cg > 1:433390/1‑238 (MQ=255)
cGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑a < 2:1074019/239‑1 (MQ=255)
cGGGAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑a < 2:194965/239‑1 (MQ=255)
taaagatctcACCGGGTCGGAAACCAACGGTAATAAGGGAAAAGTGATTCAGGTCGGCGATCTGGATGTCAGCGGCGTCGGTCACGGTATTTATATCACCGGCGACAGCGCTACGGTGGATAACAAGGGCTCCATGACTGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑g < 2:1169272/229‑1 (MQ=17)
cAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATGCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGGATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑g < 1:1434925/238‑1 (MQ=255)
cACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGGCGGCGATCGGGATGTCAGCGGCGGCGGTCACGGTATGGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACg < 1:360185/239‑1 (MQ=255)
aCCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGGGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGGCACCGATCCGGAGTCCATCGGTATCCAGGCTGCCGGCGACCCGGCGCCTGTTAACAACGAAGGCGAGAGCGCCATCTCCAACGGCGGCAC‑CGG‑C‑AC‑GCAAAtttaggg > 2:903455/1‑234 (MQ=17)
tACGGAAGTCAACGTGAATAACGGAAAAGGTATTCAGGACGGCGAGCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGAGACAGCGGAGCGGGGGATAGCAAGCGCCCCATGACGTGTACAGATCCGGGGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTCAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGtgat < 2:1118632/238‑1 (MQ=17)
aaCGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGCGCCCC‑CGG‑C‑AC‑GCAGATTAACGGTGGTGACGCCACGGc > 2:1258496/1‑239 (MQ=255)
aCGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAaacaaca < 1:903455/237‑1 (MQ=255)
ggAAAAGTTATTCAGGACGGCGATCTGTATGTCAGCGGGGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTTCCCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGATGGCAC‑CGG‑C‑AC‑GCAGATTTACGGTGATGACGCAACGGCAAACAACAACgg < 1:288978/239‑1 (MQ=255)
ttATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGtgat < 2:1060166/209‑1 (MQ=255)
ttATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGtgat > 1:1060166/1‑209 (MQ=255)
gaTTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAac < 1:698674/236‑1 (MQ=255)
gACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGCGGCAC‑CGG‑C‑AC‑TCAGATTAACGGTGATGACGCCACGGCGAATAACAACGGCA‑AAACCACCGTTg > 1:864130/1‑238 (MQ=255)
tCTGGATGGCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAg < 1:610597/238‑1 (MQ=255)
gATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGtt < 1:569735/225‑1 (MQ=255)
gTCAGCGGCGGCGGTCACGGTATTGATATCACCGGGGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCAc < 1:159248/239‑1 (MQ=255)
tgtgcggcggcgGTAACGGTATTGAGATCACCGGCGACAGCGCAACGGTGGATCACCAGGGGAGTCAGACGGGCACAAGAGAGAGGTCCATGGGTATCCAGGTTGACGGTGACCAGGCGGTCGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCAc < 2:578757/235‑1 (MQ=14)
aGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCCGTTGTTAATAACGAAGGCGAGAGCACCATCACCAACGGCGCCTC‑CAC‑C‑CC‑GCAGAAGAAGCCGGAGACCGCCCACGCAAACAAAACCAGCA‑AAACCACAGTTGACAGCACGAATTCCACAgg > 2:1220397/1‑239 (MQ=11)
cggcggcggTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAATAACGAAGGCGAGAGCCCCATCACCAACGGCGGCAC‑CGG‑C‑AC‑TCAGATTAACGGTGACGACGCCACAGCGAACAACAACGGCA‑AAACCACCGATGAAGGCAAAGGTTCCACCGGt > 2:650483/1‑238 (MQ=14)
gcggcggTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCCGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGCGGCAC‑CGG‑C‑AC‑CCAGATTAACGGGGAAGACGCCACCGCCAACAACCACGGCA‑AAACCACCGTTGATGGCAAAGCTTCCACCGGTAcc > 2:1098670/1‑238 (MQ=14)
tgggagtgatGATACCGCCGGCGGCAGAGCAGCGGAGGACAACGAGGGCATGATGACCGTCGCCGAGGCGGAGACCAGTAGTATGGAGGACGGCGGCGAGGAGGCCGTTGATAACGAAGAAGGGGGGAGCGTCACCACCGACGGTGGCGC‑CGG‑C‑AC‑GCAGATTAGCGGTGAGGACGCGGCGGCA‑‑‑AACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCt < 2:1292939/229‑1 (MQ=9)
tATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGATGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGc < 2:1337336/238‑1 (MQ=255)
tGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATa > 2:1317867/1‑239 (MQ=255)
gATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCCGTTGTCAACAACGAAGGCGAGAGCGCCATCACCAACGGCGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACCGCGAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATAGCTGGCAATa > 2:1286836/1‑238 (MQ=255)
aCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAaacaaca > 2:1382568/1‑175 (MQ=255)
aCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAaacaaca < 1:1382568/175‑1 (MQ=255)
aCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTg > 1:333284/1‑223 (MQ=255)
aCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTg < 2:333284/223‑1 (MQ=255)
aCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGaa > 2:236157/1‑239 (MQ=255)
aCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGAACGGAAATTGCTGGCAATAACGGGaa > 1:1327479/1‑239 (MQ=255)
aCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGCGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGACGACGCCACGGCGAACAACAACGGCA‑AAACCACCGTTGATGGCAAGGATTCCACCGGTACCGAAATCGCTGGCAATAACGGGaa > 1:635010/1‑239 (MQ=255)
ccGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAg < 1:236157/239‑1 (MQ=255)
cGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCTACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAgg < 1:984683/239‑1 (MQ=255)
cGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCCGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGCGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACCGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAAGATTCCACCGGTACCAAAATCGCTGGCAATAACGGGATgg > 2:700121/1‑239 (MQ=17)
cGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGa > 1:1419366/1‑239 (MQ=255)
cgcgACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATTGCC‑TCTTATACACATCT‑C‑AC‑GCAGCCGAAGGGTGCTGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGCCAACGATTCCACCGGTACGGAAATTGCGGGCACTAACGGGAAGGGGATTCAgg > 2:1247632/1‑239 (MQ=2)
gcgaCGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGa < 1:463496/236‑1 (MQ=255)
gcAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACGAGGCGGTTGTTAACCACGAACAGGTGTGTATAAGCGACAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGa < 2:188713/239‑1 (MQ=17)
aCGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACgg < 1:1317867/239‑1 (MQ=255)
ggTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCg < 1:1258496/239‑1 (MQ=255)
ggATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGAt < 1:557827/238‑1 (MQ=255)
cAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCCATTGTGAAGAACGAAGGCGAGAGCGCTATCACCAACGGCGGCAC‑CGG‑C‑AC‑GCAGCTTAACGGTGACGACGCCACCGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACCAAAATTGCGGGCAATAACGGGCAGGTAAATCTGGACGGCAGTCTg > 2:493322/1‑235 (MQ=14)
gCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGcc > 1:134127/1‑86 (MQ=255)
gCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGcc < 2:134127/86‑1 (MQ=255)
gCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCACCATCACCAATGGCGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTAACGACGCCACCGCAAATAACAACGGCA‑AAACCACCGTTGACGGAAAAGATTCCACCGGTACCGAAATCGCGGGCAATAACGGCAGGGCAATTCTGGACGGCGGCCTGGCTGTTAgc > 2:1158209/1‑239 (MQ=11)
tGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑g < 1:214893/104‑1 (MQ=255)
tGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGGTCTGGATGTCAgcggcggc > 1:1115123/1‑239 (MQ=255)
tGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCACCATCACCAACGGCGGCAC‑CGG‑C‑AC‑TCAGATTAACGGTGACGACGCCACCGCGAATAACACCGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACCAAAATCGCTGGCAATAACGGCATGGTAATTCCGGATGGCAGCCTGCATGTCAccggcggt > 2:669323/1‑238 (MQ=14)
tGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCCGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑g > 2:214893/1‑104 (MQ=255)
tGAACGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGCCGACCAGGCGGTCGTTAATAACGATGGCGATAGCGCCATCACCAATCGAGGCAC‑CGA‑C‑CC‑GCAACTCTACGGTGACGGCAGCACTGCTAACAACGACGGCA‑AAACCACCGTTGACGGGAAGGATTCCACCGGTCCGGAAATCGCAGACACTCACGAGAAGGAGATGCTGGAAGGCGCTCTGGCTGCCCacggcgc > 2:743597/1‑237 (MQ=12)
ccGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCCATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGcggcggcgg > 1:1402402/1‑238 (MQ=255)
cGTCCCCGTTCCGGAGTCCATGGGTATCCAGCTCGACGGTGACCAGGCGGTCGTCAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑CCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGATGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTc < 2:1225539/239‑1 (MQ=11)
cGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAACTTGCTGGCAATAACGGGCAGGAGATTCAGGACGGCGATCTGGATGTCAGcggcggcgggc > 2:965403/1‑237 (MQ=255)
gtaaCCGAGCCGGATGCCATAGGTATCCAGGTCGACGGTGACAAGGCTGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCa < 2:868365/236‑1 (MQ=17)
gTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGGGATTCAGGACGGCGGTCTGGATGTCAGCGGCGGCGGTc > 1:1442642/1‑238 (MQ=255)
tgtccgtaccGGGGTCAAACGGTAGCCGGGTTGACGGCGCCCAGGCGGTTGTTAACAACGAAGGCGGGGACGCCAGCACCAACGGTGGAAG‑GGGTCGGCGGCAGCGTCA‑GGTG‑TG‑TATAAGAGAAAGCAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCa < 2:235248/230‑1 (MQ=9)
gccGATCCGGAGTCCATCGGTATCCAGGTCGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCa < 1:621474/235‑1 (MQ=255)
ccGATCCGGAGTCCATCGGTGACAAGGTTGGCGCGGACGAGGCGGTTGTTACCAATGAAGGGGAGAGCGCCACCACCAACGGTGGCAC‑CGG‑C‑AC‑GTAGGGTGACGGCGGCAGCGTCA‑GATGAGTATAAGAGGCAGAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGt < 2:433390/239‑1 (MQ=16)
cGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGCAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACggga > 1:574099/1‑237 (MQ=255)
aTCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAgcggcggc < 1:517431/227‑1 (MQ=255)
aTCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAgcggcggc > 2:517431/1‑227 (MQ=255)
ggAGTCCAAAGGTAACCAGATTGTCGGCCACGAGGGGGTTAGTAACAACGAAGGCGAGAACTCCATCACCAACGGTAGCGC‑CGG‑C‑AC‑GCATATTAACGGTGATAACGCCACGGTAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGata < 1:836945/239‑1 (MQ=17)
tCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGCTTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGCCACGGTATTggtgtcc > 2:625174/1‑232 (MQ=255)
cATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCa > 2:1100119/1‑222 (MQ=255)
cATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCa < 1:1100119/222‑1 (MQ=255)
aTCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGAGCTGGATGTTACCGGCGGCGGGCACGGTGTTggtcttacca > 2:1173029/1‑229 (MQ=18)
aTCGGTATCCAGGTTGACGGCGACCAGGCCGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCgg < 1:970346/239‑1 (MQ=255)
tCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATTTCCCCGGCGAAAg > 2:399825/1‑238 (MQ=255)
tCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAgc > 1:1422667/1‑239 (MQ=255)
tCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGGATTGATAACACCGGCGACAga > 2:356003/1‑238 (MQ=255)
tCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACCGCAAACAACAACGGCA‑AAACCACCGTTTACGGGAAGGATTCCACGGGTACGTAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGTCAGCCTGGATGGCAGCGGCGGCTGGCACGGTATTggcaacaacggtggcag > 2:1397973/1‑222 (MQ=255)
ggtGACGGGGACAAGGGAGGTGGTAACAAAGAAAGGGAGAGCGCCCTCACCAACGCGGGGGC‑CCG‑G‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCaa < 2:1396458/236‑1 (MQ=17)
ggtGACGGCGACCAGGCGGTGTGTAACAACGAAGGCGAGGGCGCCGTCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGTGTATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGAGGGCACGGTATTGATATCACCGGCGACAGCGCaa < 2:1327479/236‑1 (MQ=17)
ttGACGGCGACTAGGCGATTTTCAACAACGAAGGCGAGAGCTCCATCTCCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGAAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCGCCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAAGACGGCGATCGGGACGTCAGCGTATACGGTCTCGGTATTGATATCACCGGCGACAGCGCAACg < 2:498478/239‑1 (MQ=17)
ttGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCa < 2:1422667/236‑1 (MQ=255)
tcgACGGCGACAAGGCCGTCGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCaa < 2:1275765/235‑1 (MQ=255)
gACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGCGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGACGACGCCACCGCAAACAACCACTGCA‑AACCCACCGCTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGAATCAGGACGGCGATCTGGATGCCAGCGGCGGCGGGCACGGTATTGATATAACCGCCGACACGGCAAccgg > 2:87248/1‑236 (MQ=17)
cGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGAt < 1:873722/238‑1 (MQ=255)
ggCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGCAAGGTAATTCAGGCCGGCAGCCTGGCTGTCAGAGGCGGGGGGCAAGGTGTTGATGACACCGGTGaagcacgccatgataacaaaaaag > 2:228241/1‑216 (MQ=17)
|
TAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGG > NC_000913/1466342‑1466814
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
