Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F9 I0 R1 105 139.1 2894862 97.5% 2822490 224.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,782,912 A→C 14.9% V250G (GTG→GGG)  gpsA ← glycerol‑3‑phosphate dehydrogenase (NAD+)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,782,9120AC14.9% 129.3 / 2.8 88V250G (GTG→GGG) gpsAglycerol‑3‑phosphate dehydrogenase (NAD+)
Reads supporting (aligned to +/- strand):  ref base A (36/35);  new base C (4/11);  total (41/47)
Fisher's exact test for biased strand distribution p-value = 1.53e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAA‑CGCGGAAACTTTTGCCGCAGTGCA  >  NC_000913/3782681‑3783149
                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                
aaaGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGa                                                                                                                                                                                                                                             <  2:682394/237‑1 (MQ=255)
    tCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGC‑C‑TGGTTGTCGGTACAGGGAAGCACCAAATCGCCa                                                                                                                                                                                                                                       >  1:1381867/1‑239 (MQ=255)
    tCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGGTGTCGGGCCCGGTAAAGCCCAGATCCCCa                                                                                                                                                                                                                                       >  1:1210922/1‑239 (MQ=255)
    tCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGGTGTAGGTACAGCGAAGCACCAGATCGCCa                                                                                                                                                                                                                                       >  1:928190/1‑239 (MQ=255)
    tCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCCA‑C‑TGGTTGTTGGTTCCGGTACACACCCGAACGCCa                                                                                                                                                                                                                                       >  2:872437/1‑239 (MQ=255)
    tCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACCCCA‑C‑TGGTTGGCCGTGCACGTAAGACCCCCATCGcc                                                                                                                                                                                                                                        >  2:1335643/1‑238 (MQ=255)
    tCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACCCCA‑C‑GGGTTTTTGGTCCAGGGAAACACCaaacagaca                                                                                                                                                                                                                                       >  2:912045/1‑231 (MQ=255)
     cAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTTCAGGT‑C‑TGGTTGTCCGTACAGGGAAGCACAACACCGCCa                                                                                                                                                                                                                                       >  1:33611/1‑238 (MQ=255)
      aaTGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCaa                                                                                                                                                                                                                                      >  1:473867/1‑238 (MQ=255)
        tgctgcCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGG‑C‑TGGGTGGCGGGACAGGGAAGCACCAAATCCCCAAGc                                                                                                                                                                                                                                    >  1:764103/1‑238 (MQ=255)
        tgctgcCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑CGGGTGTCGGTACAGGTAAGCACCCGATCGCCCAGc                                                                                                                                                                                                                                    >  1:813231/1‑238 (MQ=255)
        tgctgcCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTAACCGC‑C‑TGGTTGTCTGTACAGGCAAGCTCCaaaccccccgac                                                                                                                                                                                                                                    >  2:346659/1‑227 (MQ=255)
            gcCGCGCGCGCTGTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATGTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGc                                                                                                                                                                                                                               <  1:872437/239‑1 (MQ=255)
             ccTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACCGGGAAGCACCAGATCGCCAAGCCCCGc                                                                                                                                                                                                                               >  1:691651/1‑238 (MQ=255)
              cTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGcc                                                                                                                                                                                                                              <  1:740725/238‑1 (MQ=255)
               tCGTGCGCTTTTATACCTAAAAATAATAATTGAAAAATTCCCGCGGTTATTGTCATTCCAACGCCGAAGAGATGGCCCAGTTCGCGAACTTCTTTCATATGGCGTTCGCTTTCCACCACCGGACAAATCTTCACCGGCGCGTTTTGTCCATCCATGCCGTGCCCGAGAATAACGCCAAAAGGGCGTTTACGCGC‑C‑TGGTTGACGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCAt                                                                                                                                                                                                                            <  2:667844/239‑1 (MQ=255)
               tCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCAt                                                                                                                                                                                                                            <  1:662610/239‑1 (MQ=255)
               tCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCAt                                                                                                                                                                                                                            <  1:381591/239‑1 (MQ=255)
               ccgcgggcgTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGAGGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCCCCCCCTGCCCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCAt                                                                                                                                                                                                                            <  2:124392/238‑1 (MQ=255)
                cgcccgcgTTTTTCCCGCAATAGAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCCCCCCCTGCCCAATCTTCCCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATg                                                                                                                                                                                                                           <  2:813231/239‑1 (MQ=255)
                              ccGCAATATAATCCTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCCCCAGTTCGCGGCCTTCTTTCGTATTGCGGTAGCCTTCCCCCCCCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATG‑CCAATAAAGGTGGc                                                                                                                                                                                                            <  1:368344/239‑1 (MQ=255)
                              ccGCAATATAATACTTGATAAATTTCCTCGTTTATTGCCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGCCTTCTTTCGTATTGCGGTAGCCTTCCCCCACCTGACCAATCTTCTCCTGCGCGTTTTGTACACCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAGGCCCCAGATCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGc                                                                                                                                                                                                            <  2:741196/239‑1 (MQ=255)
                                gCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTCCGCGA‑C‑TGGTTGTCGGTACAGGTAAGCCCCAGATCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAg                                                                                                                                                                                                          <  1:583490/239‑1 (MQ=255)
                                           cTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTGTTCGGGACAGGGAAACACCAGACCGCCAAGCCCCCCCACG‑CCCCCAAAGGGGGCAGGGTggggccc                                                                                                                                                                                                >  2:574812/1‑234 (MQ=255)
                                            ttGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTCCGCGA‑C‑TGGCTGTCCGTACCGGAAAACACCAAATCCCCCAGCGCCCCCACG‑CACACaacgaaggcaaggccgcgccctc                                                                                                                                                                                              >  2:470305/1‑218 (MQ=255)
                                              gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTTCCCGA‑C‑TGTGTGTCGGGTCAGGTAAGCACCCGAACGCCCACTCCCGCCATC‑TCCACAAAAGTGGCAGGGTCGGCAACCacc                                                                                                                                                                                            >  1:164009/1‑237 (MQ=255)
                                              gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGGAAGCACCAGATCGCCAAGCCCCGCCATG‑CCCCTAAAGGTGGCAGGGTGGGCAccccg                                                                                                                                                                                             >  1:679026/1‑236 (MQ=255)
                                              gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGGACAGGTAAGCCCCAGATCGCCCAACCCCGCCCTG‑CCCCTAAAAGGGGGAGGGGCGGCCCCCacc                                                                                                                                                                                            >  1:1352952/1‑237 (MQ=255)
                                              gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGGACAGGTAAGCACCAAATCGCCAACCCCCGCCATG‑CCCCTAAAAGGGGCAGGGGCGGGACCCac                                                                                                                                                                                             >  1:1179024/1‑237 (MQ=255)
                                              gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGGACAGAGAAACACCAGATCGCCAAGCCCCGCCCAG‑CCCCTGAAGGAGGCAGGGTCGGCACCCCgc                                                                                                                                                                                            >  2:102064/1‑239 (MQ=255)
                                              gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGGTGTTGGTACAGGTAAGCACCAAAACGCCAAGCCCCCCCCTG‑CCCATAAAAGTGGCAGGGGCGGCACCCaa                                                                                                                                                                                             >  1:414482/1‑237 (MQ=255)
                                              gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCCA‑C‑TGGTTTTCGGGACAGGGAAGCACCAAAACGCCAAGCCCCGCCCTG‑CCCATAAACGGGGGAGGGTCGGCAccccac                                                                                                                                                                                            >  1:643792/1‑236 (MQ=255)
                                              gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACACGA‑C‑TGGGTGTCGGTACAGGGAAGCACCAAAACGCCAAGCCCCCCCATG‑CCCATAAAGGGGGCAGGGGCGGCACCCAg                                                                                                                                                                                             >  1:1365282/1‑238 (MQ=255)
                                               aTAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAgcg                                                                                                                                                                                           <  1:497083/239‑1 (MQ=255)
                                                tAAATTCCCTCGGTTTTTGCCATTTCACCGCCGAAGCGATGCTCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCCCCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAgcgc                                                                                                                                                                                          <  2:414482/239‑1 (MQ=255)
                                                              tATTGGCATTTCACCGCCGAAGCGTTCCGCCAGTTCGCGCACTTCTTTCGTATTGCGGTAGCCTTCCCCCACCTCCCCAATCTTCTCCTGCGCGCTTTGTACATCCAGCCCCGGACCGAGCATCATGCCAAAACGGCGGTTCCGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGAcgcg                                                                                                                                                                            <  2:1365282/239‑1 (MQ=255)
                                                               cttGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCTACC‑TGGTGTTGGGAACCGG‑AAGCCACAAATCGCCCAGCCCCGCCACG‑CCCACTCAGCGGGCATGCTCGGCAcccccgaccccccccacacccc                                                                                                                                                                            >  2:122069/2‑219 (MQ=255)
                                                                       ttCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGC‑C‑TGGGTTTTGGTAAAGGTAAACACCAAATCGCCAAGCCCCGCCCTG‑ACCCCAAAAGGGGCAGGGGCGGCGCCCCGCGCCGCACCAAGACGCGACATTTca                                                                                                                                                                    >  2:1144220/1‑238 (MQ=255)
                                                                       ttCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGGTGTCGGGACAGGGAAACACCAAAACGCCAAACCCCCCCATG‑CCCCTAAAAGTGGCAGGGTCGGCACCCCGCGCCCCACCCAGACGCGCCATTTcc                                                                                                                                                                    >  1:1157373/1‑237 (MQ=255)
                                                                        ccaacgcagcggacagccgcCAGTTCGCGGACTTCTTCCGTTTCGCGGTAGCCTTCCCCCCCCTACCCAATCTTTTCCTCCGCTCTTTGCACATCCAGGCCCGGACCAAGAATCACGCAAAAACGGCGGTTACGCCA‑C‑GGGTTTTCGGTACGGGTAAGCACCAGATCCCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTcagc                                                                                                                                                                  <  2:592553/222‑1 (MQ=255)
                                                                             gCCGAAGCGATGCGCCAGTCCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCagccagcc                                                                                                                                                             <  1:573868/239‑1 (MQ=255)
                                                                             cccGAAGCGATGGCCCATTTCGGGGCCTTCTTGCTTTTTGGGGTGCCCTCCCCCCCCCGGCCCAATCTTCCCCTGGGCGTTTTGTCCTCCCAGGCCCTGACCGAGCACAAGGCAAAACCGGCGGTTACGCGC‑C‑TGGTTGTCGGAACAGGTAAGCACCAGACCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCagccagcc                                                                                                                                                             <  2:283264/238‑1 (MQ=255)
                                                                                gAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCAc                                                                                                                                                          <  1:1270909/239‑1 (MQ=255)
                                                                                                tCGCGGACTTCTTTCGTATTGCGGTAGCCTCCCCCCACCTGACCAATCTTCCCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCg                                                                                                                                           <  1:138321/238‑1 (MQ=255)
                                                                                                    gttgtgttgtctgatggCGTTAGCCTCCCACCGCCTGACCAGTCTCCTCCTGCGCGTTTTGAAAAGCCATGCCCGAACCGAGTAGCAGGCCAAAACGGCGTTGAGGCGA‑C‑GGGTGGGCGGTCCAGTAAAGCCCTAGTCCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCCCCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTAcg                                                                                                                                       <  2:872612/222‑1 (MQ=255)
                                                                                                        ttcttTCGTATTGCGGTAGCCTTCCCCCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAACCGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAgc                                                                                                                                               <  1:1274962/226‑1 (MQ=255)
                                                                                                         tcttCCGTATTGCGGTACCCTTCCCCCGCCTGACCAATCTTCTCCTCCGCGCTTTGTACATCCAGGCCCTGACCGGGCATCACGCCAAACCGGCGGTTACGCGA‑T‑TGGTTGCCGGTACAGGTAAGCACCAGACCGCAAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCAtt                                                                                                                                <  2:933676/239‑1 (MQ=255)
                                                                                                          cttTCGTTTTGCGGTAGCCTACCACCCCCTGCCCAATCTTCCCCTCCGCGCTTTGTACATCCAGGCCCTGCCCAAGCAACATGCCAAAACGGCGTTTACGCGA‑C‑TGGTTGCCGGTACAGGTAACCCCCAGATCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTc                                                                                                                               <  2:764103/239‑1 (MQ=255)
                                                                                                                tATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACCCGA‑C‑CCGGTGTCGGGACAGGTAAGCACCAGAACGCCCAGCCCCGCCATG‑CCCCTAACGGGGGCCGGGGCCGCACCCCGCCCCGCCCCCCCAACCGGCATTTTACCCACCCCCCGCGGGGTCAGCGccccacccccccttgaccc                                                                                                                           >  2:1133084/1‑221 (MQ=255)
                                                                                                                  ttGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTAAGCGA‑C‑TGGTTGTCGGGACAGGGAAACACCAAAACCCCCAACCCCCCCCTG‑CCCCTAAAAGTGGGAGGGTCGGGACCCCGCGCCCCCCCCAGACGCGACAATTCAGACAGCCCCCCGGGGGTCCGCGCCGCACg‑cgcccatctctttta                                                                                                                       >  2:1274962/1‑227 (MQ=255)
                                                                                                                     cGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGAACGCCAAGCCCCGCCCTG‑CCCATAAAGGTGGCAGGGGCGGCCCCCAGCGCCGCACCAAGACGCGACATTTTAGCCAGCCCACGGGGGATCAGCGCCGGACG‑CGCATTCGCACCAAAAc                                                                                                                     >  1:1390123/1‑238 (MQ=255)
                                                                                                                        tacccTCCCCCCCCCGGACCAATCTGCCCCGGCGCGCTTTTTACACCCAGGCCCTGACCGAGCATCGTGCCAAACCGGCGGTTACGCGA‑C‑TGGTGGGCGGTACAGGTAAGCCCCAGATCGCCAACCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGa                                                                                                                  <  2:143320/235‑1 (MQ=255)
                                                                                                                        tAGCCTTCCCCCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGa                                                                                                                  <  1:839807/238‑1 (MQ=255)
                                                                                                                         aGCCTCCCCCCACCCGACCAATCTCCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGAt                                                                                                                 <  1:1036847/238‑1 (MQ=255)
                                                                                                                          ctcccccacccCCTGACCAGTATACTCCTGCGCGTTTTGCGCAACCAGGCCAGAACCAAACATCAGGCCAAACCGGCGTTTCGGCGA‑C‑TGGTAATCGTTACAGGAAGGCACCGGATCGCCAGACCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATAc                                                                                                               <  2:164009/234‑1 (MQ=255)
                                                                                                                                 accaccTGACCAATCTCCCCCTGCGCGCTTTGTCCATCCATCCCCTGACCGAGCATCTTGCCAAAACGGCGGTTCCGCGC‑C‑TGGTTGGCGGTACAGGTAAGCACCAGATCGCGAGGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGa                                                                                                        <  2:1089595/239‑1 (MQ=255)
                                                                                                                                     ccTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTTTGCCA‑C‑CGGTTTTCGGGCCAGGGAAGCACCACACCCCCCAGCCCCGCCATG‑CCCCTAAATGGGGGAAGGGAGGCACCCAGCGCCGCCCCCAACCGCCACATTTCAGCCCACCCACGGGCGGTCAGCGGCGCACGCCGCCTCCACCCCAACA‑CGATACCCACGGACAt                                                                                                     >  2:497147/1‑238 (MQ=255)
                                                                                                                                       tgcccATTCTTCCCCTGGGCGTTTTTTACACCCATGCCCTGCCCGGGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGTTTGTCGGTACAGGTAACCACCAGACCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATccc                                                                                                  <  2:1390123/236‑1 (MQ=255)
                                                                                                                                       ggACAAACCTTCTCGTGCGCGCTTTGTCCTCCCATGCCCTGACCGAGCATAATGCCAAACCGGGGTTTCCGCGA‑C‑TGGTGGTCGGTACAGGAAAGCCCAAGACCGCCAACCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATGCCGTCGGACATccc                                                                                                  <  2:200023/238‑1 (MQ=255)
                                                                                                                                         aCCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTTCGCGA‑C‑TGGGTTTCGGGACAGGGAAGCACCAAAACGCCAAGCCCCCCCCAG‑CCCACAAAAGTGGGAGGGGCGGCACCCCCCGCCCCCCCCAGACGCCACCTTTCAGCCCGCCCCCGGGGGATCAGAGCCGCACC‑CCCACTCCCACCCAAACCCACACCCTCgggactcccc                                                                                                 >  2:912436/1‑230 (MQ=255)
                                                                                                                                           cAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCAGGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGACCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCa                                                                                              <  1:1327047/239‑1 (MQ=255)
                                                                                                                                                        cgcgcTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTAACCCG‑C‑AAGTTGTCGGGACCCGGGAAAACCAGAACCCCAAGCCCCGCCATG‑CCCCTAAAAGGGGCAGGGGAGGCCCCCAGCGCCGCCCCCAGAACCGCCACTTAAGCCAGGCCACAGGCGAGAAGGCCCCGACG‑CGCACTCGCCACAAAAACACCAACCTCGGCCATCCCCGcgcacacggcacca                                                                                  >  2:697274/1‑225 (MQ=255)
                                                                                                                                                               tGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTCCGCGA‑C‑TGGTTGTCTGTACAGGTAAGCACCAGAGCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATccc                                                                                                  <  1:1178751/215‑1 (MQ=255)
                                                                                                                                                                    acccgtGCCCTGACCGCGCATAGAGCCAAAGGGGCGGTT‑CGGGC‑CTTGGGTGGCGGGACAGATAAGCCCCACATCGCACAGCCCCGCCAGG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACcg                                                                     <  2:482792/234‑1 (MQ=255)
                                                                                                                                                                      ccagccccTGCCCGGGCATCAGCCCAAACCGGCGGTTACGCGC‑T‑GGGTTGTCGGTACGGATAAGCCCCACACCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACcgcg                                                                   <  2:1179024/234‑1 (MQ=255)
                                                                                                                                                                      ccATGCCCTGACCGAGCTTCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACcgcg                                                                   <  1:1133084/239‑1 (MQ=255)
                                                                                                                                                                            cccgcggaatcccgtggCCAAAACGGTGAATAAGCGT‑A‑TGGTGGACGGGCCGGGTAAGCCCGAGAGCAACCAGCCGCACCATG‑CCCATAAGGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATGCGCACCAAAACCGATACCGACGGACAACCCCGCACCAATAGCAATAACGTTTTTCACCGCGCCGACa                                                             <  2:473867/223‑1 (MQ=255)
                                                                                                                                                                            ccTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCa                                                             <  1:912436/239‑1 (MQ=255)
                                                                                                                                                                                aCCGAGCATCATGCCAAAACGGCGGTTTCGCGG‑C‑CGGTTTTCGGGACAAGGAAAGAACAAAACGCCAAACCCCGCCAAG‑CCCCTAAAGGGGGGCGGGGCGGCACCCAACGCCCCCCCAACACGCCCCGATTCCACCAACCCACGGGCGGACAACGCCGCAGG‑CCGAATCGCCCCAAAAAAGAAAACGTCCGACACTCCCGCCCCCAAGGCAAAAACATTTTTTACCCCaccgccca                                                            >  2:1271798/1‑234 (MQ=255)
                                                                                                                                                                                aCCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTTTCGGGACAGGGAAGCACCAGAACGCCAAACCCCCCCCTG‑CCCCCAAAAGTGGGAGGGTCGGCACCCACCGCCCCACCCACACCCGCCACATCACCCCCCCCCCCGGGGCTCAGCGCCGCACC‑CGCCTCCCCACCCAAACCGCTAACGGCCGACCCCCCCCCACCCATGGCAACAAAGCTTTTcccccccccccccacc                                                          >  2:165932/1‑226 (MQ=255)
                                                                                                                                                                                aCCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGGCCGTACAGGGAAGCACCAGAACGCCAAGCCCCCCCCCG‑CCCATAAAAGGGGGCGGGTCGGCACCCCGCGCCCCCCCCACACCCGCCACTTCAGCCACCCCACGGGGGGGACGCGCCCGACC‑CCCCCTCGCACCACAACCCAAACCCGCGGGCATCCCCCCCCCCCCAGCAAAACCGTTTTTTAccccccccccccacc                                                         >  2:60389/1‑226 (MQ=255)
                                                                                                                                                                                 ccGAGCAACATGCCAAAGCGGCGGTTACGCGA‑C‑TGGTTGGCGGTACAGGTAAGCGCCAGATCGCAAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTg                                                        <  1:512038/239‑1 (MQ=255)
                                                                                                                                                                                 ccGAGAATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCACGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTg                                                        <  1:150766/239‑1 (MQ=255)
                                                                                                                                                                                    aGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TTGTTGTCGGGGCAGGGAAGCACCAAACCGCCAAACCCCGCCATG‑CCCCTAAAAGAGGCAGGGGCGGCACCCCGCGCCGCACCAAAACCCGCCAATTCACCCCGCCCCCCGGGGATCAGCGCCGCACC‑CCCCTTCGCGCCCAAACCCCTACCCTCGGGCCTCCCCCCACCCACGGCCAACACGGTTTTTACCGCCCCCCCCAGccccc                                                      >  2:439367/1‑234 (MQ=255)
                                                                                                                                                                                      catcatGCCAAACCGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGACCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTcagc                                                                                                                                                                  <  1:101031/129‑1 (MQ=255)
                                                                                                                                                                                      catcatGCCAAAACGGCGGTTCCGCGA‑C‑TGGTGGACGTTACAGGTAAGCACCAGAGCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACg                                                    <  1:122069/238‑1 (MQ=255)
                                                                                                                                                                                                    ggcggTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGa                                     <  1:346659/239‑1 (MQ=255)
                                                                                                                                                                                                      ggcggttcccggccgggTTGCGGGTACAGGAAGGCACCAGCTCGCTAGCCCCCGCAATG‑CCCGTAAAGGTGGCAGGGTCGGGACCCAGCGCCGCACCAAGACGCGACATTACAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGa                                     <  2:866414/224‑1 (MQ=255)
                                                                                                                                                                                                            ggcgA‑C‑TGGTTGTCGGTACAGGTAAGCCCCACATCGCCAGGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTa                             <  2:1381867/238‑1 (MQ=255)
                                                                                                                                                                                                                a‑C‑TGGTTGTCGGTACAGGTAAGCACCAAATCGCCAAACCCCCCCCTG‑CCCATAAAGGTGGCAGGGTCGGCACCCCGCGCCGCACCAAGACGCGCCATTTCAGCCAGCCCACGGGGGATCAACGCCGTACG‑CGCATTCGCCCCCAAACCCATACCGCCGGGCATCCCCGCACCAAAGGCCATAACGGTTTTCACCGCGCCGCCCACCTGCACGCCCATTAAATCCCGATTGCCGTAAA‑c                         >  2:1203070/1‑238 (MQ=255)
                                                                                                                                                                                                                                 aGGTAAGCACCAGATCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACCGCGGAAACTTTTGcc          >  1:819323/1‑239 (MQ=255)
                                                                                                                                                                                                                                   gTAAGCCCCAGACCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAA‑CGCGGAAACTTTTGCCg         <  1:117132/237‑1 (MQ=255)
                                                                                                                                                                                                                                    tAAGCACCAGATCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAA‑CGCGGAAACTTTTGCCg         <  1:912045/236‑1 (MQ=255)
                                                                                                                                                                                                                                    tAAGCACCAGATCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAA‑CGCGGAAACTTTTGCCGCAg      >  2:669271/1‑239 (MQ=255)
                                                                                                                                                                                                                                        cACCAGATCGCCAAGCCCCGCCATGCCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTg                                                        <  1:1265169/187‑1 (MQ=255)
                                                                                                                                                                                                                                        cACCAGATCGCCAAGCCCCGCCATGCCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTg                                                        >  2:1265169/1‑187 (MQ=255)
                                                                                                                                                                                                                                        cACCAGATCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAA‑CGCGGAAACTTTTGCCGCAGTgca  >  1:810865/1‑239 (MQ=255)
                                                                                                                                                                                                                                        cACCAGATCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCAAGCCAATGAAATCCGGATTGCTGTAAA‑CGCGGAAACTTTTGCCGCAGTgca  >  1:913977/1‑239 (MQ=255)
                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                
AAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGA‑C‑TGGTTGTCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCATG‑CCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACG‑CGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAA‑CGCGGAAACTTTTGCCGCAGTGCA  >  NC_000913/3782681‑3783149

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A