Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F18 I0 R1	274	115.5	2655328	86.7%	2302169	226.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	1,263,180	G→T	19.3%	D107E (GAC→GAA)	lolB ←	lipoprotein localization factor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,263,180	0	G	T	19.3%	149.8 / 6.6	75	D107E (GAC→GAA)	lolB	lipoprotein localization factor
Reads supporting (aligned to +/- strand): ref base G (6/53); new base T (14/2); total (20/55)
Fisher's exact test for biased strand distribution p-value = 6.83e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGCAGGTTGCGTTTTGGTGTC‑ATAACCACCATAAACAACCTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGATTGCGCACGTCTTGCTGATGCTGACGCCATTGTGGCGAATCCGGGCTTTTGC  >  NC_000913/1262952‑1263409

tgcgggTTGGGTTTTGGTGTCTTTAACCTAATAAAACATCCTTCCAGTTTTCGTCATTTTGGGTGTAGGGAATTTCGCTCAGGCGGTAGTGGTCGTCCAGTTTGTAGTCGGTTGAATCACCAGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGAAATTGGCATACCGGTAAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAAc                                                                                                                                                                                                                                <  1:572468/235‑1 (MQ=255)

   gggTTGCGTTTTGGGTTT‑ATAACCCCCCAAAACAACCTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCa                                                                                                                                                                                                                            <  1:1171445/238‑1 (MQ=255)

    gggtGCGTTTTGGTGTT‑ATAACCATCATAAACAACCTTCCAGTTTTTGCCATTCTGGCTGTAGGTTATTTCGCTCAGGCGGTACTGGTCGTACAGTTTGTAGTCGGTTGCATCTCCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTACCTGCa                                                                                                                                                                                                                            <  2:785140/235‑1 (MQ=255)

               tttggtactAACCCCCATAACCACCTTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCTAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTGTATTGTC‑GCCTAACTGCA‑CG‑TTACCCGGt                                                                                                                                                                                                               <  1:1011458/231‑1 (MQ=255)

                      aTAACCACCATAAACAACCTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCAt                                                                                                                                                                                                        <  2:1129800/239‑1 (MQ=255)

                        atcccccttAAACACCTTTCCAGTTTTTGCCGTTTGGGATGTAGGTAATTCAGCTCAGGGCGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTc                                                                                                                                                                                                      <  1:1068261/231‑1 (MQ=255)

                             cctttatccacCTTTCACTTTTTGCCTTTCTGGTTGTGGGTAATTTCGCTCAGGCGGTACTGGTCGCCCAGTTTGTAGTCGGTTGCATAACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTc                                                                                                                                                                                                 <  1:354386/230‑1 (MQ=255)

                             ccaTAAACATCTTTTCAGTTTTTTCCATTCTGGCTGTAGGTAAGTTCCCCCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTGGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTc                                                                                                                                                                                                 <  1:1019755/239‑1 (MQ=255)

                             ccaTAAACAACCTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTc                                                                                                                                                                                                 <  2:1212863/239‑1 (MQ=255)

                             ccaTAAAATAGCTTTCATTTTTTGCCCTTTTGGCTGTAGGTTATTTCGCCCAGGGCGTACTGGTCGTCCAGTTTGTGGTCGGTTGCATCAACCGGTAAACCTAAAATCCTCTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTc                                                                                                                                                                                                 <  1:638578/239‑1 (MQ=255)

                             cactAAACTACCTTTCGGTTTTTGCCATTTTGGCTGTAGGTAATTCCGGCCAGGCGGTACTGGGCGGCCAGGTTGGAGTCGGTTGCATCACCCGGTAACCCTAAAATCCTCTGGCGCAAGCTGTTTAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTACGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTc                                                                                                                                                                                                 <  1:918056/236‑1 (MQ=255)

                              caTAAACAACCTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGGATAACAC‑AGACCTTTTTTTTT‑GACCTACTGCC‑AG‑TTACCCgcctgggaattaccgccc                                                                                                                                                                                                >  1:1163719/1‑222 (MQ=255)

                                tAAACAACCTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑CGACCCTTTTTTTT‑GGCTAATCTCA‑CG‑TTTCCCGGGTGGGCAttacgcccc                                                                                                                                                                                                >  2:1145919/1‑230 (MQ=255)

                                tAAACAACCTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGGATCAAGC‑TTACCTTTCTTTTT‑TACTAACTTCC‑CA‑TTACCCGGTTAAGCAtttcacaccca                                                                                                                                                                                              >  2:8176/1‑230 (MQ=255)

                                  accaacCTTTCATTTTTTGCCATTCTGGCTGTAGGTAATTTCGCGCAGGCGGTACTGGTCGTCCAGTTTTGAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGtt                                                                                                                                                                                            <  1:594297/237‑1 (MQ=255)

                                       ccTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGGCCCTTATTTTC‑GCCTAAATGCA‑CG‑TTACCCGGGTGAGCCTTCCGCTCCAGTTCCGt                                                                                                                                                                                        >  2:780596/1‑238 (MQ=255)

                                        cTTCCAGTTTTTGCCATTCTTGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGtgc                                                                                                                                                                                      <  2:947764/239‑1 (MQ=255)

                                        cTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTCACCCTAAAATCCACTGGCTCAAGCTGTTGAGCGGAATTGGGATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTTTAACGC‑TTCCCCTTCTTTTC‑GCCCAACTCCA‑CC‑CTCACCCGTTGAGCATTCGTCCCCAGCTCCGtgc                                                                                                                                                                                      >  1:792386/1‑239 (MQ=255)

                                        cTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGCCCTTTTTTTTC‑GACTAACTGCA‑CC‑TTACCCGGTTTAGCATTCACGTCCCGTTCCGtgc                                                                                                                                                                                      >  2:103235/1‑239 (MQ=255)

                                        cTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGtgc                                                                                                                                                                                      <  2:30587/239‑1 (MQ=255)

                                        cTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAAAGC‑CTACCCTTTTTTTC‑GACTAAACGCA‑CGTTTCCCCGGTTG‑GACTTCAGCTCCCGTTCCGt                                                                                                                                                                                        >  2:594297/1‑237 (MQ=255)

                                              gTTTTTTCCATTTGGGGTGTGGGTAATTTCGCCCAGGGGGTACCGGTTGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCACCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCa                                                                                                                                                                                <  1:780596/239‑1 (MQ=255)

                                              gTTTTTGTCTTTTTGTCTTTTTGTATTTTCGCTCAGGGGGTCCTGGTCGGTCCGTTTGTAGTCGGTTGCATGACCCGGTAAACCTAAAATCCTCTGGCGCAAGCTTTTGAGGGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCGCGTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCa                                                                                                                                                                                <  1:74386/239‑1 (MQ=255)

                                              gTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCa                                                                                                                                                                                <  2:472281/239‑1 (MQ=255)

                                                ttttGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGGCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCa                                                                                                                                                                                <  2:867037/237‑1 (MQ=255)

                                                           tGGCTGTAGGTAATTTCGCTCAGGCGGTACGGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGag                                                                                                                                                                   <  2:179485/239‑1 (MQ=255)

                                                             gCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGGTAGACGCGGGACCTTATTTTTC‑G‑CTAACTGCACCG‑TTCCCCGGTGGGGGATTCACCCCCA‑CTCCGCGCTGcccccaggggttcggtaca                                                                                                                                                                 >  1:37278/1‑223 (MQ=255)

                                                                  tgtttgtttCGCTGAGGCTGTCATGGTCGTCCAGTTTGTAATTGGGTGCTTCACCCGGTAAACCTAAAATCCCCTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCCGCTCTTCGGCGGCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTGGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGgaga                                                                                                                                                            <  1:971502/233‑1 (MQ=255)

                                                                  aGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTGTAAACC‑TGACCCTTATTTTCTGCCTAA‑TTCC‑CG‑TTTACCGCTTGAGCATTCACCCCCCGTTCCCGGCTGCCCCCTTGGGTAGAGagccgacga                                                                                                                                                            >  2:102670/1‑233 (MQ=255)

                                                                  aGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGa                                                                                                                                                            <  2:1237236/239‑1 (MQ=255)

                                                                  aGGTAATTTCGCGCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGa                                                                                                                                                            <  2:881593/239‑1 (MQ=255)

                                                                   tgTAATTTCGCCCAGGCGGTTCTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGa                                                                                                                                                            <  2:105356/237‑1 (MQ=255)

                                                                             cTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACCC‑CGTGCCTTATTGTC‑GCACAACTTGC‑CG‑TTATCCGGGTGAGCATTCTACTCCACTTTCCTGCCGCCCCACGGGttttggagagcagaacggagggggc                                                                                                                                                  >  1:1254967/1‑215 (MQ=255)

                                                                                            tcgtcCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAAACC‑TGACCTTTATTTTC‑GACTAACTGCC‑CG‑TTACCCGGTTGAGGCTTCAGCTCCCGTTCCGTGCTGCCCAATGGGGTAGTGAGCAGCGGACGGGAGCGGTCCTGGCCGGGTtgct                                                                                                                                   >  2:1025415/1‑238 (MQ=255)

                                                                                                ccAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCCTTATTTTT‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCCATGGGTTAGTGAGGAGCAGCCGGGAGCGATCCTGGCCGGGTTGGTGcccg                                                                                                                              >  2:824484/1‑237 (MQ=255)

                                                                                                      tGTAGTTGGTTGCTTTCCCCGGTAAACCTAAAACTTACCGGGGCAGGTTTGGGACCGGAATTTGGATTCCGGTCAATTTGCC‑AATCACCGCTTCGGCGGCATCGTCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAg                                                                                                                        <  1:102670/239‑1 (MQ=255)

                                                                                                      tGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAg                                                                                                                        <  2:37278/239‑1 (MQ=255)

                                                                                                               ttGCCTCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTa                                                                                                                <  2:829429/238‑1 (MQ=255)

                                                                                                                  cATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑GTACCTCTATTGTC‑CACTTACTGCA‑CG‑TTACCCGGTTGAGGATTCCTCTCCAGTTCCGTGCTTCCCCATGGGGTATTGAGGAGCAGACGGGAGCGGGCCTGGCCGGTTTGTTGGCAGaaaaaaggggggacacca                                                                                                            >  1:960827/1‑226 (MQ=255)

                                                                                                                       cccTGTAAATCTAAAATCCCCCGGGGCGAGCTTTTGAGCGGAATTGGCATGCCGGTCAATTGGTC‑AATCATCTCTTCGGCGGCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTttg                                                                                                       <  1:8176/239‑1 (MQ=255)

                                                                                                                        ccGGTAAACCTAAAACCCCCTGGCGCACGTTGTTTGGCGGAATTGGCTTTCCGGTCAATTTGCC‑AATCATCTCTTCGGGTGCATCGGCGGTATAACGC‑TGACCTTTAGTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCACTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGTTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTttgt                                                                                                      <  1:669000/239‑1 (MQ=255)

                                                                                                                           gttacccTTAAACCCACTGGCCCAAGTTTTTGAGCGGAATTGGCATTCCGGTAAATTTGCC‑AATCGTCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTgg                                                                                                   <  1:723259/234‑1 (MQ=255)

                                                                                                                            tAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGGATAACGC‑TGACCTTTTTTTTC‑GCCTAAATGCC‑CG‑TTCCCCGGTTGAGCATTCAGCTCCAGTTCCGGGCTTCCCCCTTGGTTAGTGTGGAGCAAACGGTAGCGACACCTGCCGGGTTTTTGCCCGCAAAAAAGGGGGGCCACTTTTTTTTGGt                                                                                                  >  1:962184/1‑239 (MQ=255)

                                                                                                                               cccTAAAACCCCCGGGCGCAAGGTTGTGAGCGGAATTGGCATTTCGGTCAATTTGCC‑AACTCTCTTTTCGGCGGCCTCGGGGGTTAAACGC‑TGCCCTTTATGTTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAg                                                                                               <  1:1145919/238‑1 (MQ=255)

                                                                                                                               aCCTAAAATTTCCTGGGGCAAGGTGTGGGGCGGAATGGGCATGCCGGTCATTTTGCC‑AATCATCTCTTCGGCGGCAGCGGCGGTATAACGC‑TGACCTTTATTGGC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAg                                                                                               <  1:446924/239‑1 (MQ=255)

                                                                                                                               aCCTAAAACCCAGTGCCGTGAGCTGTTGGGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCCTCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTGCACTTTTTGTTGGTCAg                                                                                               <  1:1084413/239‑1 (MQ=255)

                                                                                                                                ccTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAAAGC‑CCACCTTTCTTTTC‑GCCTAACTGCC‑CC‑CTTCCCCGCTTAGCATTCAACTCCACTTCCTCGCTGCCCCCTGGGGCTGTGTGCAGGCAACGCTACCGACACCCGCCGGCTTTCTGCCCGAAAACACGGGCGGGCACTTTTTCTTGGTCaca                                                                                              >  1:158729/1‑237 (MQ=255)

                                                                                                                                 cTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTTTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTTCGCTCCCGTTCCGTGCTGCCCAATGGGGTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGGTTGCTGCCCGAAAAAACGGGCGGACACTTTTTGTTGGTCAGaa                                                                                             >  2:237825/1‑239 (MQ=255)

                                                                                                                                 cTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAg                                                                                                                                                      <  2:371481/182‑1 (MQ=255)

                                                                                                                                                     ttgttgggggagaTTGGCTTGCCGGTCAATTTGCC‑AGATATCTTTTGGGGTTCATCGGAGGTTGAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCGGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGcgccgc                                                                          <  1:590579/226‑1 (MQ=255)

                                                                                                                                                      tGTTGGGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGcgccgc                                                                          <  2:1290444/237‑1 (MQ=255)

                                                                                                                                                      tGTTGGGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGcgccgc                                                                          <  2:323365/237‑1 (MQ=255)

                                                                                                                                                      tGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGcgccgc                                                                          <  2:1018062/237‑1 (MQ=255)

                                                                                                                                                      ggTTGAGCGGAATTGGCTTTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGGC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGa                                                                        <  2:892067/238‑1 (MQ=255)

                                                                                                                                                             cGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGa                                                                  <  2:768623/238‑1 (MQ=255)

                                                                                                                                                              ggAATTGGCTTTCCGGTCAATTTTCCAAATCCTC‑CTTGGGGGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATa                                                                <  1:1239630/239‑1 (MQ=255)

                                                                                                                                                              ggAATTGGCATTCCGGTCAATTTGCC‑AATCATCGCTTCGGCGTCATCGGCAGTATAACGT‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATa                                                                <  2:182372/239‑1 (MQ=255)

                                                                                                                                                               taagtggatttCCGGTTAATTTGGC‑AGTCTGCCTTTCGGAGTCATCGGCGGTTTATCGC‑GTCCCTTTATTTGC‑GAGTAACTGCA‑CG‑TGACCCGGTTGAGCATTCAGCTCGAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTGTGATa                                                                <  1:292065/229‑1 (MQ=255)

                                                                                                                                                               gAATTGGGATTCCGGGCAATTTGCC‑AATCATTCGTTCGGGGTCATCGGCGGTATAACGC‑TGACCTTTATTGGC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATa                                                                <  2:960827/238‑1 (MQ=255)

                                                                                                                                                               gAATTGGCATTCCGGTCAATTTGCC‑AATCATCTTTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGGC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATa                                                                <  2:407674/238‑1 (MQ=255)

                                                                                                                                                               gAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATa                                                                <  2:341844/238‑1 (MQ=255)

                                                                                                                                                               gAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATa                                                                <  2:608964/238‑1 (MQ=255)

                                                                                                                                                               gAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATa                                                                <  2:158729/238‑1 (MQ=255)

                                                                                                                                                               gAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATa                                                                <  2:1163719/238‑1 (MQ=255)

                                                                                                                                                                   tGGCATTCCGGTCAATTTGCC‑AATCATCTCTGCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGAt                                                           <  2:1222481/239‑1 (MQ=255)

                                                                                                                                                                              tCAATTGGCC‑AATCATCTCTTCGGCGTCAGCGGTGGTATACCGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TGCCCCGGTTGAGCAGTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGATTgcg                                                 <  2:967400/238‑1 (MQ=255)

                                                                                                                                                                                 aTTTTCC‑AATCATCTCTTCGGGGTCTGCGGCGGTTTAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCGCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGATTGCGCACg                                             <  1:679866/239‑1 (MQ=255)

                                                                                                                                                                                          atcatcTCCTCGGCGGCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGATTGCGCACGTCTtgctg                                     <  2:971150/239‑1 (MQ=255)

                                                                                                                                                                                               ctctTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCg                                                                                                                      <  2:227982/153‑1 (MQ=255)

                                                                                                                                                                                                                        cGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGATTGCGCACGTCTTGCTGATGCTGACGCCATTGTGGCGAATCCGGGCt       <  2:862586/239‑1 (MQ=255)

                                                                                                                                                                                                                        cGC‑TGACCTTTATGGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGATTGCGCACGTCTTGCTGATGCTGACGCCATTGTGGCGAATCCGGGCt       <  2:1108472/239‑1 (MQ=255)

                                                                                                                                                                                                                              aCCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCCATGGGTTAGTGAGCAGCAGACGGTACCGATCCTGGCCGGTTTGCTGCCAGAAAAACCGGGCGTACACTTTTTGTTGTTCAGAAATATAAGCGAACACCCCGCCGGCCTGATATTGATTAAGATTGCGAAAGTCTTGCTGATGACGACTCCATTTGGGGCAATCAGGGCttttt   >  1:800059/1‑237 (MQ=255)

                                                                                                                                                                                                                              aCCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTTGTCAGAAATATAAGCGAACGAGCCGCGAGTCTGATACTGATTAAGATTGCACCCGCCTTGCTGAGTCTGGCGCCATTTTGGCGAAAACAGGCTTTTGc  >  1:511659/1‑239 (MQ=255)

                                                                                                                                                                                                                              aCCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGTTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGa                                                      >  2:713695/1‑187 (MQ=255)

                                                                                                                                                                                                                              aCCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGATTGCGCACGTCTTGCTGATGCTGACGCCATTGTGGCGAATCCGGGCTTTTg   >  1:792075/1‑238 (MQ=255)

CGCAGGTTGCGTTTTGGTGTC‑ATAACCACCATAAACAACCTTCCAGTTTTTGCCATTCTGGCTGTAGGTAATTTCGCTCAGGCGGTACTGGTCGTCCAGTTTGTAGTCGGTTGCATCACCCGGTAAACCTAAAATCCACTGGCGCAAGCTGTTGAGCGGAATTGGCATTCCGGTCAATTTGCC‑AATCATCTCTTCGGCGTCATCGGCGGTATAACGC‑TGACCTTTATTGTC‑GACTAACTGCA‑CG‑TTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGATTGCGCACGTCTTGCTGATGCTGACGCCATTGTGGCGAATCCGGGCTTTTGC  >  NC_000913/1262952‑1263409

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A