Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F18 I0 R1 274 115.5 2655328 86.7% 2302169 226.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,477,207 A→C 16.4% A688A (GCA→GCC)  ydbD → PF10971 family putative periplasmic methylglyoxal resistance protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,477,2070AC16.4% 165.9 / 5.0 78A688A (GCA→GCC) ydbDPF10971 family putative periplasmic methylglyoxal resistance protein
Reads supporting (aligned to +/- strand):  ref base A (47/16);  new base C (3/11);  total (50/28)
Fisher's exact test for biased strand distribution p-value = 3.31e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TTACCCGCTGTTGTTCTCAAGGAATTACAGCAAAACACGCCACGCAATGATATTTGGGCGAAGTTTTTTCTGAGGCAGGAAAACAGTTCCCGTGCGCAGGTT‑GACGAAGCGTTACGTGTTTATTATGCACTAGACCCCGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGAACT‑GGATTTAGTCCGCCAGCTGGCGCTTAACGGTAAGACGCGCGCAATACGGGAACAAGCGATGAGAAAACTTGATGAG  >  NC_000913/1476971‑1477441
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                             
ttACCCGCTGTTGTTCTCAAGGAATTACAGCAAAACACGCCACGCAATGATATTTGGGCGAAGTTTTTTCTGAGGCAGGAAAACAGGTCCCGTGCGCAGGTT‑GACGAAGCGTTACGTGTTTATTATGCACTAGACACCGAGGCGTTAGCACAACTGGATGCACGGG‑C‑AAAACAACCGGACGGTGTATGGGGGGGGCAACAGGCGAAAAGA‑AA‑TCTACCATTTTT‑CAA‑ATTGGGGGCaaa                                                                                                                                                                                                                                             >  1:1314095/1‑237 (MQ=255)
    ccGCTGTTGTTCTCAAGGAATTACAGCAAAACACGCCACGCAATGATATTTGGGCGAAGTTTTTTCTGAGGCAGGAAAACAGTTCCCGTGCGCAGGTT‑GACGCAGCGTTACGTGTTTATTATGCACTAGACCCCGGTGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGGATAGTGTGGCGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTacc                                                                                                                                                                                                                                         >  2:736281/1‑237 (MQ=255)
    ccGCTGTTGTTCTCAAGGAATTACAGCAAAACACGCCACGCAATGATATTTGGGCGAAGTTTTTTCTGAGGCAGGAAAACAGTTCCCGTGCGCAGGTT‑GACGAAGCGTTACGTGTTTATTATGCACTAGACCCCGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAC‑TTTCGGCGCACTTaac                                                                                                                                                                                                                                         >  2:577562/1‑239 (MQ=255)
    ccGCTGTTGTTCTCAAGGAATTACAGCAAAACACGCCACGCAATGATATTTGGGCGAAGTTTTTTCTGAGGCAGGAAAACAGTTCCCGTGCGCAGGTT‑GACGAAGCGTTACGTGTTTATTATGCACTAGACCCCGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGGATATTGTGGAGTACCTTGGCGATAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCCCTTaac                                                                                                                                                                                                                                         >  2:517704/1‑239 (MQ=255)
       ctgatcttCTCAAGGAATTACAGCAAAACACGCCACGCAATGTTATTTGGGCGAAGTTTTTTCTGAGGCAGGAAAACAGTTCACGTGCGCAGGGT‑GACGAAGCGTTACGTGTTTATTATGCACTAGACCCCGATGCGTTAGCACAACTGGATGTAATGG‑C‑AAAAAAAACAGGACGTATATGGTGGAATACACTGGCGAAAAGC‑AA‑TCTCACTTTTTT‑CAA‑GTTCGGCGCACTTaacaa‑c                                                                                                                                                                                                                                     >  1:1082401/7‑239 (MQ=255)
             ttCTCAAGGAATTACAGAAAAACCCGCCACGCAATGATATTGGGGCGAAGTTTTTTCTGAGGCAGGAAAACAGTTCCCGTGGGCAGGTG‑GACGAAGCTTTACGTGTTTATTATGCACTAGACCCCGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTCCGGCGCACTTAACAA‑CCG‑Ccac                                                                                                                                                                                                                              <  2:586651/239‑1 (MQ=255)
                gcAAGTAATTAACGCAAAACACCCCCCGCAATGATTGTTGGGCGAAGTTTTTGCTGAGGCAGAAACACGTTTCCCGGGCGGGGGTT‑GCAGAAGCGTTACTGTTTTATGAAGCACAAGACCCCGATGGTTGGGCACAACGGGATGTCCTGG‑A‑AAAAAAACCGGTTCGTATATGGGGGAGTACTCTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCCTTTAACAA‑CCG‑Ccacaca                                                                                                                                                                                                                           <  1:319793/238‑1 (MQ=255)
                    ggAATTACAGCAAAACACGCCACGCAATGATATTTGGGCGAAGTTTTTTCTGAGGCAGGAAAACAGTTCCCGTGCGCAGGTT‑GACGAAGCGTTACGTGTTTATTATGCACTAGACCCCGATGCGTTAGCACAACTGGATGTCCTGG‑C‑AAAACAACCGGACCGTATATGGTGGGGTACACTGCCGCCAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTTGGGGCACTTAACAA‑CCG‑CCACACCCCg                                                                                                                                                                                                                        >  2:448492/1‑238 (MQ=255)
                            aGCAAAACACGCCACGCAATGATATTTGGGCGAAGTTTTTTCTGAGGCAGGAAAACAGTTCCCGTGCGCAGGTT‑GACGAAGCGTTACGTGTTTATTATGCACTAGACCCCGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAGAAGC‑AA‑CCTCACATTTTT‑CCA‑GTTCCGGCCCCTTAAAAACCCC‑CCacacacaccagccaaa                                                                                                                                                                                                                >  1:947211/1‑229 (MQ=255)
                                     cgccaggcAATGATTTTTGGGCGAAGTTTTTTCTGAGGAAGGAAAACAGTTCCCGGGCGCAGGTT‑GACGAAGCGTTACGTTTTTATTATGCACTAGACCCCGATGCTTTAGCACACCTGGATGTACTGG‑C‑AAACCAACCGGATCTTATATGGTGGAGTACACTGGCGAAAAGA‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCCCTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCa                                                                                                                                                                                                      <  2:527004/239‑1 (MQ=255)
                                      gccacgcAATGATATTTGGGCGAAGTTTTTTCTGAGGCAGGAAAACAGTTCCCGTGCGCCGGTT‑GACGAAGCGTTACGTGTTTATTATGCACTAGACCCCGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGGATATGGTGGAGTAACCTGGCGAAACGC‑CA‑TCCCACCTTTTT‑CAA‑GTTTGGCGCCATTAACAA‑CCC‑CCACACACCCCCGCCAGCACCggcggccg                                                                                                                                                                                                     >  1:1291200/1‑237 (MQ=255)
                                      gccacgcAATGATATTTGGGCGAAGTTTTTTCTGAGGCAGGAAAACAGTTCCCGTGCGCAGGTT‑GACGAAGCGTTACGTGTTTATTATGCACTAGACCCCGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGCAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CAG‑CCCCACACCGCCTGCAGACCTGGCGGCAg                                                                                                                                                                                                     >  2:897133/1‑239 (MQ=255)
                                        cacgcAATGATATTTGGGCGAAGTTTTTTCTGAGGCAGGAAAACAGTTCCCGTGCGCAGGTT‑GACGAAGCGTTACGTGTTTATTATGCACTAGACCCCGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGaa                                                                                                                                                                                                   >  2:1106626/1‑239 (MQ=255)
                                                 atatTGGGGGAAAGTTTTTTCTGAGGCAGGAAAACGGTTCCCGGGCGCAGGTT‑GACGAAGCGTTACGTGTTTATTTGGCACTAGCCCCCGATGCGTTAGCACAACGGGATGTACTGG‑A‑AAAACACCCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATccc                                                                                                                                                                                          <  2:189993/239‑1 (MQ=255)
                                                 atatTGGGGCGAATTTTTTTCTGAGGCAGGAAAACGGTTCCCGTGCGCAGGTT‑GAGGAAGCGTTACGTGTTTATTATGCCCTAGCCCCCGATGCTTTAGCACAACTGGATGTACTGG‑A‑AAAACACCCGGATCGTATATGGTGGAGTACACTGGCAAAAAGC‑AA‑TCTCACATTTTC‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATccc                                                                                                                                                                                          <  2:170676/239‑1 (MQ=255)
                                                  tgtttGGGGAAATTTTTTTTGGGGGCAGAAAACCAGTTCCCGGGCGAAGTTT‑GACGAAGGGTTACGTTTTTTGTACGCACTAGACCCCGAGTCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGACCGTATAGGGGGGAGTACACTGGCGAAAAGA‑AA‑TCTCACATTTTT‑AAA‑GTTGGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATccc                                                                                                                                                                                          <  1:998341/236‑1 (MQ=255)
                                                      ttgggtaggTTTTTTTTGAGCAAGGAAAACATGCCCTGTG‑ACGGGTTGGACGAAGTGTATCGTTTTTATGAGCCCTTAGCCCCCGATGGTTTAGTCAAACGGGTTGTACTGG‑A‑AAAACAACCGTGTCGTTCTGGGGGGAGTCCACGGGCGAAAGCC‑AA‑TCCCAGATTTTC‑AAA‑GTTCGCCGCCCTTACAAC‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAgtg                                                                                                                                                                                     <  1:897133/231‑1 (MQ=255)
                                                                         ggCAGGAAAACAGTTCCCGTGCGCAGGTT‑GACGAAGCGTTACGTGTTTATTATGCACTAGACCCCGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGAACACTGGCGAAAAGC‑AA‑TCTAACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCCCACACCGCCTGCAGTACTGGCGGCAGAAATTAATCACCAAGGGGGGAATGTGGGGACGaaa                                                                                                                                                                  >  1:34102/1‑238 (MQ=255)
                                                                                    aGTTCCCGTGCGCAGGTT‑GACGAAGCGTTACGTGTTTATTATGCACTAGACCCCGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGttt                                                                                                                                                       >  2:943483/1‑239 (MQ=255)
                                                                                      ttCCCGTGCGCAGGTT‑GACGAAGCGTTACGTGTTTATTATGCACTAGACCCCGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCCCACACCGCCTGCAGTCCTGGCGGCATAAATTGATCCCGAGTGGTGGATTGTGCGGATGAATATTCCCCGtttt                                                                                                                                                      >  2:847187/1‑238 (MQ=255)
                                                                                              cgcgGGTT‑GACGAGGCTTTACGTTTTTTTTAGGCACGAGACCCCGATGCGTTAGCACACCTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGGGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTC‑CAA‑GTTCGGCCCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGa                                                                                                                                              <  2:686262/238‑1 (MQ=255)
                                                                                                           atgttgttgttttttAATATCCAATGGCCCCCGTTGGGTTGACACAATGGGTTGTACGTG‑C‑AAAACAACGGGTTCATATATGGGTGCATCCTAGGGCGAAAGCC‑AA‑TCTCACATTTTT‑CAG‑GTCCGGAGCCATTATCAA‑CCG‑CCACCCACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCg                                                                                                                                 <  1:1082831/227‑1 (MQ=255)
                                                                                                            aGCGTTACGTGTTTATTATGCACTAGACCCCGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGCTTCTGGCGATGGATAATCCCCGTTTTCCAGTTGATGTATTACAGGCgg                                                                                                                                >  2:187829/1‑238 (MQ=255)
                                                                                                              cGTTACGTGTTTATTATGCACTAGACCCCGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGCAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCT‑CCACACACCGCCTCCAGTCATGGCGGCAGAAATTAATCCCGGACGGTGGCATCTGGGGTTGAAAAATCCCCGGTTTcaggtgtgtgggtaaaaggggggg                                                                                                                              >  1:689989/1‑216 (MQ=255)
                                                                                                                        ttattaTGCACTAGACCCCGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGCATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACAAACCGCCTGCCGTACTGCCGGAGGAAATTTACCCCAAGGGGGGGATTTTGGCCATAAAAAATCCCCGTTTTCAACTTTAGGGGTTAAAGGctgggtgtaaaaggg                                                                                                                    >  1:196538/1‑225 (MQ=255)
                                                                                                                         ttttatGCTCTAGCCCCCGCTGGTTGAGCCAGACTGG‑TGTACCGGAC‑AAACCAACCGTGTCGTATAGGGGGGGTTACCCTGGCAAAAAGC‑AA‑TCTCACGTTTTT‑CAA‑GTGCGGCGCATTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGa                                                                                                                   <  1:70386/237‑1 (MQ=255)
                                                                                                                          attatGCACTAGACCCCGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAAAAATCCCCGTTTTCCAGTTGCAGGATTAAAGGCGAGGCTGAAACGGGa                                                                                                                   >  2:70386/1‑238 (MQ=255)
                                                                                                                          attatGCACTAGACCCCGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGAAGAATAATCCCCGGTTTCCCGGTGATTGATTAAAGGCGAGGCTGAAACGTGa                                                                                                                   >  2:810732/1‑238 (MQ=255)
                                                                                                                             atGCACTAGACCCCGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCCGTACTGGCGGCAGAAATTGATCCCGGGTGGGGGCTTGTGGCGCTGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGaaggggaaaagagat                                                                                                                  >  1:579462/1‑222 (MQ=255)
                                                                                                                                  gtgaccccgtgtggttttgCAAAACTGG‑TGTACTTG‑AAAAAACATCCGGTTTGTATTGGGTGGCTTACCCGGGC‑AAAACC‑CA‑ACCCACCTTTTTCCAA‑GTTGGGCGCCTTTACCAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCt                                                                                                          <  1:1106626/221‑1 (MQ=255)
                                                                                                                                  cctcatatttttataaggaacagaCTGGATCTACTGA‑A‑AAAACAACCGGTACGTTTGTGGGGGATTCCACTGGCAAAAAAC‑AA‑TCTCACTTTTTC‑CAA‑GGCCGGCCCATTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCt                                                                                                          <  1:1256906/216‑1 (MQ=255)
                                                                                                                                  cTAGACCCCGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGGGGTGGATTGTGGCGATGAAGAATCCCCGTTTTCCCGTTGTTGGATTAAAGGCGAGGCTGAAACGTGATCCttt                                                                                                             >  2:91295/1‑236 (MQ=255)
                                                                                                                                     gACCCCGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCCGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGCGGAGGCTGAAACCGGATCCTTTGCTGGc                                                                                                       >  2:592681/1‑239 (MQ=255)
                                                                                                                                      aCCCCGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGGTGAAAAATCCCCGTTTTCCCGTTGACTGATTAAAGGGCAGGGTGaaaaggagacctttggggggg                                                                                                      >  1:861665/1‑221 (MQ=255)
                                                                                                                                       ccccgtggtttgaacacaGCTGGTTGTAGGGG‑A‑AAAACAACCGGAGTGTATGGGGGGGGTTCCCCGGCCGAAAGGC‑AC‑TCCCACTTTGTT‑CAA‑GTCGGGCGATATTCACAC‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCg                                                                                                      <  1:943483/224‑1 (MQ=255)
                                                                                                                                        cccGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGATTAATCCCCGTTTTCCAGTTGACGTATTAAAGGCAAGGCTGAAACGGGACCCTTTCCTGGGGtt                                                                                                    >  2:1291584/1‑239 (MQ=255)
                                                                                                                                          cGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCGGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGGGATCCTTTGCTGGCGttta                                                                                                  >  2:191806/1‑237 (MQ=255)
                                                                                                                                          cGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGGGGTGGATTGTGGCGGTGAATAATCCCCGTTTTCCAAGTGATGTATTAAAGGGGAGGCTGAAAAGAGAGAATTTGCCGGCGGTaa                                                                                                  >  1:454555/1‑238 (MQ=255)
                                                                                                                                                 ttAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGCGGGGGGGATTGTGGCGCAGAATAATCCCCGGTTTCCAGTTGATTGATTAAAGTCGAGGCGGAAAGATGACCCTTTGCTggaggtctagctggt                                                                                           >  1:888775/1‑226 (MQ=255)
                                                                                                                                                  tAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGGTTTAAAGGCGAGGCTTGACAGGGATCCTTTCCTGGCGTCAGACCTTGtt                                                                                          >  2:516557/1‑239 (MQ=255)
                                                                                                                                                   aGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGGTTTCCCGTTGTTGTATTAAAGGCCAGGCTGCAACGTGGTCCTTTTCTGGCGTTGAAGCTTGTTa                                                                                         >  2:113149/1‑239 (MQ=255)
                                                                                                                                                     cacaACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAGGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCCCCTGCAGTACTGGCGGCCGAAATTGATCCCGAGTGGTGGCTTTCGGCGAGGAAAAATCCCAGTTTTCCACGTGCTGGATTAAAGGCGAGGCTGAAACGGGATCCTTTTTCGGCGTTGAAGCTGTTTaa                                                                                        >  1:1163493/1‑238 (MQ=255)
                                                                                                                                                            ttggtggaacgggaaaaaaaACCGGATCTTAGTGGGGGGATTACACTGGCAAAAACC‑AA‑TCTCACATTTTT‑AAA‑GTTCGGCGCCCTAAACAG‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGa                                                                                  <  2:541750/225‑1 (MQ=255)
                                                                                                                                                             gagttACGGG‑A‑AAAACAACCGGATGGTATATGGTGGAGTACACTGGCAAAAAGC‑AA‑TCTCACATTTTC‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGAAc                                                                                <  2:947211/234‑1 (MQ=255)
                                                                                                                                                                  aCTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCCGCAATTGATCCCGAGTGGGGGATTGTTGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGGGGGCGAAACGTCATCCTTTTCTGGCGTTAGAGCTTTTTAACACCGAACC‑GGAtt                                                                         >  1:49531/1‑239 (MQ=255)
                                                                                                                                                                  aCTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGGTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGGGATCCTTTCCTGGGCTTAAAGCTTGTTAACCCTGAACT‑GGAtt                                                                         >  2:587867/1‑239 (MQ=255)
                                                                                                                                                                    tGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCCGAAATTGATCCCGAGTGGGGGATTGTGGCGCGGAATAATCCCCGTCTTCCAGGTGATGGTTTTAAGGCGTGGTCGAAACGGGTACCTTTGCTGGCGGTACAGTTTTTTAACCCGGAAAC‑GGAttaa                                                                       >  1:316740/1‑237 (MQ=255)
                                                                                                                                                                    tGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGGATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGGGATCCTTTGCTGGCGtttaag                                                                                                >  2:1256906/1‑211 (MQ=255)
                                                                                                                                                                    tGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTTAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAAAGCTTGTTAACCCTGAACT‑GGATTTa                                                                       >  2:612090/1‑239 (MQ=255)
                                                                                                                                                                     gg‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGGATAATACCCGTTTTCCAGTTGATGTATTAAAGGCGAGGATGAAACGGGATCCTTTGCTGGCGTTAAGGCTTGGTAACCCTGAACC‑GGAGTTAg                                                                      >  2:857135/1‑239 (MQ=255)
                                                                                                                                                                     gg‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCCGTTGATGGATTAAAGGCGTGGCTGGAAACTGATCCTTTTCTGGGGTTAGAGCTTGTTAAACCTGAAAT‑GGATTTaa                                                                      >  1:15368/1‑238 (MQ=255)
                                                                                                                                                                        c‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGGGGGTTGGGGCGATTAAAAATCCCCGATTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGGGTTCCTTTGCTGGCGTTTGAGTTGTTTAAACCTGAAAT‑GGGTTTatga                                                                    >  1:307606/1‑236 (MQ=255)
                                                                                                                                                                                  cGGAGCGTATATGGTGGAGTACCCGGGCGAAAACC‑AC‑TCCCCCATTTTC‑AAA‑GTGCGGCGCCCTTACCAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGAACT‑GGATTTAGTCCGCCAGCTg                                                           <  2:888775/239‑1 (MQ=255)
                                                                                                                                                                                       cGTATGTGGGTGACTACACTGGCGAAACGC‑AA‑TCTCAGTTTTTA‑TAA‑GTGCGGCGCCCTTACCAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGAACT‑GGATTTAGTCCGCCAGCTGGCGCt                                                      <  2:1082401/239‑1 (MQ=255)
                                                                                                                                                                                        tttattggggggtgaccatGGCAAAACGC‑AA‑TCCCACTTTTTG‑AAA‑GTTCGGCGCAGTTAAAAA‑CCG‑CCACCCACCGCCTGGAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGAACT‑GGATTTAGTCCGCCAGCTGGCGCt                                                      <  2:1113358/220‑1 (MQ=255)
                                                                                                                                                                                        ggatatGGTGGAGTCCCGGGGCGAAAAGC‑AA‑TCCCACTTTTTT‑CAA‑GTCCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGAACT‑GGATTTAGTCCGCCAGCTGGCGCtt                                                     <  2:49531/237‑1 (MQ=255)
                                                                                                                                                                                         tataggtgggagacaccgggCAAAAAGA‑AA‑TCCACCATTTTT‑AAA‑GTCCGGCCCCCTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGAACT‑GGATTTAGTCCGCCAGCTGGCGCTTa                                                    <  2:15368/221‑1 (MQ=255)
                                                                                                                                                                                               gtggAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCTGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCACTTTTCCCGTTGATGTATTAAAGGCGAGGCTGAAAAGTGATCCTTTTCTGGGGTTAGAGCTTGGTGAACCTGGACTGGGTTTTAGTccccaaccgggagctaaaggta                                               >  1:766747/1‑219 (MQ=255)
                                                                                                                                                                                               gtggAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGAACT‑GGATTTAGTCCGCCAGCTGGCGCTTAACGGTa                                              >  2:802820/1‑239 (MQ=255)
                                                                                                                                                                                                tggAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGAACT‑GGATTTAGTCCGCCAGCTGGCGCTTAACGGTaa                                             >  2:58371/1‑239 (MQ=255)
                                                                                                                                                                                                   aGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCg                                                                                                                                                                        >  1:534792/1‑114 (MQ=255)
                                                                                                                                                                                                   aGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGAACT‑GGATTTAGTCCGCCAGCTGGCGCTTAACGGTAAGAc                                          >  2:732548/1‑239 (MQ=255)
                                                                                                                                                                                                   aGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGGGGTGGAGTGTGGCGGTGAATAATCCCCGTTTTCCAGTTGATGTTTTTAAGGCGGGGTTGAAAAGGGTTCCGTTGGTGGGGTTTAAATTTTTTACCCCTGAACG‑GTGCTTAGTCGCCCAGCTGGTGCATaaagcaaaaaa                                          >  1:67567/1‑230 (MQ=255)
                                                                                                                                                                                                   aGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCCAGTGGTGGATTGTGTCGGTGAATAATCCCCGTTTTTCCGTTGATGTATTAAAGGCAGGGTGGGAACGGGATCCTTTTCTGGCGTTATAGCTTTTTAACCCCGAACT‑GGGTTTAATCCCCCACACTGCGCTTAAAGGttaaaa                                          >  1:1287289/1‑234 (MQ=255)
                                                                                                                                                                                                   aGTACACTGGCAAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCg                                                                                                                                                                        <  2:534792/114‑1 (MQ=255)
                                                                                                                                                                                                       taccgggcaaaaGC‑CATTCTCACATTTTT‑CAA‑TTTCGGCGCCCTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGAACT‑GGATTTAGTCCGCCAGCTGGCGCTTAACGGTAAGAcgcg                                       <  2:1212133/231‑1 (MQ=255)
                                                                                                                                                                                                          ttggcaaaaGCAAA‑TCTCACTTTTTT‑CAG‑TTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGAACT‑GGATTTAGTCCGCCAGCTGGCGCTTAACGGTAAGACgcgcgc                                    <  2:316740/234‑1 (MQ=255)
                                                                                                                                                                                                          tGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGAACT‑GGATTTAGTCCGCCAGCTGGCGCTTAACGGTAAGACGCGCGCa                                   >  2:147866/1‑239 (MQ=255)
                                                                                                                                                                                                          tGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGAGGAGCTGAATAATCCCCGCTTTCCAGTTGGTGTATTAAAGGCGGTGTGGAAACGTGATCCTTTTCTTGCGTTAGAGCTTGTTAACCCTGAACT‑GGATTTAGTCCGCCAGCTGGCGCTTAACGGTGAAAcgcgcgac                                   >  1:1223935/1‑237 (MQ=255)
                                                                                                                                                                                                          tGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGAACCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAAAGTGCTCCTTTTCTGGCGTTTGTGCGTTTTAACCCTGAACT‑GGATGTAATCCCCCAGCGGGGGCTTAAAggagaactcggccca                                   >  1:280508/1‑226 (MQ=255)
                                                                                                                                                                                                           cctgagaaaaaccactcctatttttt‑AAAGGTTCGGCGCAATTAAACA‑CCG‑CCCACCGCCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGAACT‑GGATTTAGTCCGCCAGCTGGCGCTTAACGGTAAGAcgcgcg                                     <  1:592681/218‑1 (MQ=255)
                                                                                                                                                                                                            gCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGGTTTCCAGTTGATGTATTAAAGGCAAGGCTGAAACGTGTTCCTTTGCTGGCGTTAGAGTTTGTTAACCCTTAACC‑GGATTTAGTCCCCCCGCTGGCCCTTAACGTTAAGaaccccccaaa                                 >  1:1037442/1‑229 (MQ=255)
                                                                                                                                                                                                               aaaaGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTCAACCCTGAACT‑GGATTTAGTCCGCCAGCTGGCGCTTAACGGTAAGACGCCCGCAATACg                              >  2:443986/1‑239 (MQ=255)
                                                                                                                                                                                                                gaaaacgacttcacctttttt‑CAA‑GTGTGGCACCATTCACCA‑CCCCCCACCCACCGCCTGGAGTACTGGCGGCAGAAATTGATCCCGTGTGGTGGATGGTGGCGATGAATAATCCCCGTTTTCCGGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGAACT‑GGATTTAGTCCGCCAGCTGGCGCTTAACGGTAAGACGCGCGCAATa                                <  1:528075/223‑1 (MQ=255)
                                                                                                                                                                                                                  aGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGCTTGTGGCGATGAATAATCCCCGTTTTCCAGTTGGTGTATTAAAGGCGAGGCTTGAACTGGCTCCTTTTTTGGGGTTTAAGCTTGTTAACCCTGAAAC‑TGATTTTATCCGCCAGCTGGCGCTTAACgcgaaaacccgccccaaaaggga                           >  1:206128/1‑217 (MQ=255)
                                                                                                                                                                                                                       a‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGGGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGAACT‑GGATTTAGTCCGCCAGCTGGCGCTTAACGGTAAGACGCGCGCAATAAGGGAGCaa                       >  2:1318017/1‑239 (MQ=255)
                                                                                                                                                                                                                                ttttt‑AAA‑GTGCGGGCCACTAAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGAACT‑GGATTTAGTCCGCCAGCTGGCGCTTAACGGTAAGACGCGCGCAATACGGGAACAAGCGATgag               <  2:1287289/239‑1 (MQ=255)
                                                                                                                                                                                                                                            tCGGCGCACTTAACAA‑CCG‑CCACCACCCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGAACT‑GGATTTAGTCCGCCAGCTGGCGCTTAACGGTAAGACGCGCGCAATACGGGAACAAGCGATGAGAAAACTtgat     <  2:454555/239‑1 (MQ=255)
                                                                                                                                                                                                                                                cccACGTAAAAC‑CCG‑CCACACACCGGCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGAACT‑GGATTTAGTCCGCCAGCTGGCGCTTAACGGTAAGACGCGCGCAATACGGGAACAAGCGATGAGAAAACTTGATGAg  <  2:529943/236‑1 (MQ=255)
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                             
TTACCCGCTGTTGTTCTCAAGGAATTACAGCAAAACACGCCACGCAATGATATTTGGGCGAAGTTTTTTCTGAGGCAGGAAAACAGTTCCCGTGCGCAGGTT‑GACGAAGCGTTACGTGTTTATTATGCACTAGACCCCGATGCGTTAGCACAACTGGATGTACTGG‑C‑AAAACAACCGGATCGTATATGGTGGAGTACACTGGCGAAAAGC‑AA‑TCTCACATTTTT‑CAA‑GTTCGGCGCACTTAACAA‑CCG‑CCACACACCGCCTGCAGTACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGTTTTCCAGTTGATGTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGAACT‑GGATTTAGTCCGCCAGCTGGCGCTTAACGGTAAGACGCGCGCAATACGGGAACAAGCGATGAGAAAACTTGATGAG  >  NC_000913/1476971‑1477441

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A