Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F18 I0 R1 274 115.5 2655328 86.7% 2302169 226.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,135,881 T→G 10.9% V683G (GTG→GGG)  katG → catalase‑peroxidase HPI, heme b‑containing

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,135,8810TG10.9% 388.3 / 6.1 152V683G (GTG→GGG) katGcatalase‑peroxidase HPI, heme b‑containing
Reads supporting (aligned to +/- strand):  ref base T (35/92);  new base G (21/3);  total (57/95)
Fisher's exact test for biased strand distribution p-value = 4.25e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 155 total aligned reads displayed.

GACCGCGCCGGAAATGACTGCGCTGGTGGGCGGCATGCGTGTACTGGGTGCCAACTTCGATGGCAGCAAAAACGGCGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCG  >  NC_000913/4135645‑4136116
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                             
gACCGCGCCGGAAATGGCTGCGCTTGTGGGCGGCATGCGTGTACTGGGTGCCAACTTCGATGGCAGCAAAAACGGCGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGgtgt                                                                                                                                                                                                                                             <  2:324061/239‑1 (MQ=255)
 gccGGGCCGGAAAGGACTGGGGTGGTGGGCGGCATGGGTGTACTGGGTGCCAACTTCGATGGCATGAAAAACGGGGTCGTCACTGACCGCGTTGGTGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGTTATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTGCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGtt                                                                                                                                                                                                                                            <  1:402550/238‑1 (MQ=255)
  ccGCGCCGGAAATGGTGGGGGTGGTGGGCGGCATGGGGTTACTGGGTGCCAACTTCGGTGGCAGCAAAAACGGCGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCTGTGCGGATCTGGTGttt                                                                                                                                                                                                                                           <  1:718289/239‑1 (MQ=255)
  ccGCGCCGGAAATGGCTGCGCTGGTGGGGGGCATGGGTTTACTGGGTGCCAACTTCGAGGGCAGCAAAAACGGCGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGttt                                                                                                                                                                                                                                           <  1:1298421/239‑1 (MQ=255)
  ccGCGCCGGAAATGACTGCGCTGGTGGGCGGCATGCGTGGACTGGGTGCCAACTTCGATGGCAGCAAAAACGGCTTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGtt                                                                                                                                                                                                                                            <  2:1225422/238‑1 (MQ=255)
   cggggcGGGAATGGCTGCGCGGGTGGGCGGCATGGGGGTACTGGGTGCCAAATTCGAGGGCAAGAAACACGGCGTCTTCACGGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGttt                                                                                                                                                                                                                                           <  1:870584/233‑1 (MQ=255)
   cgggcCGGAAATGGCTGGGCTGGTGGGCGGCATGCTTGTACTGGGTGCCAACTTCGATGGCAGCAAAAACGGCGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGttt                                                                                                                                                                                                                                           <  2:981249/235‑1 (MQ=255)
   cgcgCCGGAAATGGCTGCGCTGGTGGGCGGCATGCGTGTACTGGGTGCCAACTTCGATGGCAGCAAAAACGGCGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGttt                                                                                                                                                                                                                                           <  2:222133/238‑1 (MQ=255)
   cgcgCCGGAAATGACTGCGCTGGTGGGCGGCATGCGTGTACTGGGTGCCAACTTCGATGGCAGCAAAAACGGCGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGttt                                                                                                                                                                                                                                           <  2:279184/238‑1 (MQ=255)
   cgcgCCGGAAATGACTGCGCGGGGGGGGGGCATGCGTGTTCTGGGTGCCAACTTGGATGGCAGCAAAAACGGCGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGttt                                                                                                                                                                                                                                           <  1:917243/238‑1 (MQ=255)
                 gctggtgtgtggGCCGCTGGCGTGATCGGGGGGCCAACCACGAGGGCCGAAAAAACGGCGCCTTCACTGCAGGCTTTGGGGTACTGAGGCATGGATTCTGCGTGAACTTGCCGGATATGCGTGACGAGTGGAAAGCGGCCGACGCATCGAAGGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCTAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTc                                                                                                                                                                                                                            <  1:228928/231‑1 (MQ=255)
                  tGCGCTGGGGGGCGGCATGCGTGTACTGGGTGCCAACTTCGATGGCAGCAAAACCGGCGTCTTCACTGACCGCGTTGGCGTATTGCGCAGTGACTTCTTCGTGAACTTGCTGGATATGCGTTCCGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTCAAACCGGCCAAGTGCAATTTCCGGGCAGCCGAGCGGGTCTGGGGTTTGGTTTTAACCCCGt                                                                                                                                                                                                                             >  1:133967/1‑237 (MQ=255)
                           ggggggttttcgttgccTGGGTTCCAATTGCGATGGCAGCAAAACCGGCGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCtgcgtgcg                                                                                                                                                                                                                   <  1:677902/222‑1 (MQ=255)
                           gggCGGCATGCGTGTACTGGGTGCCAACTTCGATGGCAGCAAAAACGGCGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCtgcgtgcg                                                                                                                                                                                                                   <  2:143653/238‑1 (MQ=255)
                              cggcATGCGTGTACTGGGTGCCAACTTCGATGGCAGCAAAAACGGCGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAGGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCACGCCGAGCGGATCTGGGGTTTGGTTTCAACACCGTccgcgcgacggggg                                                                                                                                                                                                               >  1:288695/1‑227 (MQ=255)
                                 cATGCGTGTACTGGGTGCCAACTTCGATGGCAGCAAAAACGGCGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGGGAAATTTACGGCCAGCCGTGCGGATCTGGGGTTTGGTTCTACCTCCGTCCtgcgtgggtcggcg                                                                                                                                                                                                             >  2:1028680/1‑230 (MQ=255)
                                 cATGCGGCTACTGCCCGCCAACTTCGGTCGCAGCAAAAACGGCGTCTTCACTGACCGCGCTGGCGGAATGAGCAATGACTTCTTCGTGAACTTCCTGGATATGCGTTACGAGTGGAAAGCGACCGACGACTCGAAACAGCTGTTCGAAGGCCGTGACCGGGAAAACGCCGAAGTGAAATTTACGGCAAGCCAGGCGGGGCGGGGGTTGGGTTCTAACTCCTCCCTGCGTGCGGTGGCgg                                                                                                                                                                                                            >  1:1157763/1‑239 (MQ=255)
                                  aTGCGTGTACTGGGTGCCAACTTCGATGGCAGCAAAAACGGCGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCgg                                                                                                                                                                                                            <  2:621826/238‑1 (MQ=255)
                                       tgtACTGGGTGCCAACTTCGATGGCAGCAAAAACGGCGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGGGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGttt                                                                                                                                                                                                      >  2:719002/1‑239 (MQ=255)
                                         tACTGGGTGCCAACTTCGATGGCAGGAAAAACGGCGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTAc                                                                                                                                                                                                    <  2:1131299/239‑1 (MQ=255)
                                              ggTGCCAACTTCGATGGCAGCAAAAACGGCGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGGGTGGGACGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGAGAAATATAATGCCAACCGTGCGGATCTGGGGTGTGGGTCTAACTCCGTCCTGCGCGCGGGGGCGGAAGGTTAccggag                                                                                                                                                                                               >  1:678409/1‑234 (MQ=255)
                                              ggTGCCAACTTCGATGGCAGCAAAAACGGCGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGGGGCGGAAGTTTACCCCAg                                                                                                                                                                                               >  2:460184/1‑239 (MQ=255)
                                                      ctccGATGGCAGCAAAAACGGCGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATg                                                                                                                                                                                       <  2:1295572/236‑1 (MQ=255)
                                                      cTTCGATGGCAGCAAAAACGGCGTTTTCCCTTACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATg                                                                                                                                                                                       <  2:101375/239‑1 (MQ=255)
                                                          gATGGCAGCAAAAACGGCGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGccc                                                                                                                                                                                    >  2:437011/1‑238 (MQ=255)
                                                                 gcaAAAACGGCGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCCC‑GAGCAg                                                                                                                                                                           >  2:1233318/1‑239 (MQ=255)
                                                                 gcaAAAACGGCGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGACCTGGGGTTTGGTTCTAACTCCGTCCTGCGTGCGGGGGCGGAAGTTTACGCCAGTAGCGATGCCCCC‑gagagg                                                                                                                                                                           >  2:528953/1‑237 (MQ=255)
                                                                   aaaaaCGGCGTTTTCACTGACCGGGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGt                                                                                                                                                                          <  2:34943/238‑1 (MQ=255)
                                                                   aaaaaCGGCGTCTTCACTGAACGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGATTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGt                                                                                                                                                                          <  2:824040/238‑1 (MQ=255)
                                                                           cGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGGGTTTGGTTCTAACTCCTTCCTGCGTCGGGGGGCGGAAGTTCACGCCGGGAGAGCGGCCCCC‑CGAAAGTTGG‑TTAAAg                                                                                                                                                                >  1:1010745/1‑239 (MQ=255)
                                                                           cGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGGGAAATTTACGGCTAGCCGTGCGGATCTGGTGTTTGGGTCTAAATCCGTTCTGCGGGCGGTAGGGGAAGTTTTACCCAGTAGCGAAGCCCAG‑GAGAAAGTTG‑TTAAAg                                                                                                                                                                >  1:1112245/1‑239 (MQ=255)
                                                                                        cgggTTGGCGTATTGGGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTggcggc                                                                                                                                                   <  2:1191264/236‑1 (MQ=255)
                                                                                        cgcgTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGCGCTGTTCGACGGCCGTTACCGTGAAACCGGCGAAAGGAACTTTACGGCCAGCAGTGCGGCTCTGGTGTTCGGTTCTAACTCCGTCCTGCGTCCGGGGTCGGCCGTTTCACCCGTTCGCGATGCCCTC‑TAGACGTTTG‑TTAAACATCCCGTggcggc                                                                                                                                                   >  1:428260/1‑239 (MQ=255)
                                                                                        cgcgTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑ga                                                                                                                                                                               >  2:677360/1‑212 (MQ=255)
                                                                                         gcgTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGGGGTTGGTTCTAACTCCGTCCTGCGTGGCGGGGCGGAGGTTTAGCCCAGTAGCTCACCCCAC‑GAGAAGTTTG‑TTAAAAAACTCGTgggggag                                                                                                                                                  >  1:619925/1‑237 (MQ=255)
                                                                                                 gtttttgggaattgcttttgcGTGAACTTGTGGGATATGGGTTACCAGGGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGa                                                                                                                                           <  1:735207/218‑1 (MQ=255)
                                                                                                 gTAGTGAGCAATGACTTCTTCGTAAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGa                                                                                                                                           <  2:722300/238‑1 (MQ=255)
                                                                                                  tATTGAGCAATGGCTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGaa                                                                                                                                          <  2:872635/238‑1 (MQ=255)
                                                                                                   aTTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGaaa                                                                                                                                         <  2:761518/238‑1 (MQ=255)
                                                                                                    ttGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAGGCGACCGACGAATCGAAAGAGGTGTTCGAAGGCCGTGACCGTGAAACAGGCGAAGTGAAATTTAAGGCCAGCCGTGCGGAACTGGTGTTTGGTTTTAACTACGTTCTGCGTGCGGGGACGGGTGTTTACGACGGTAGCGTGGACCCC‑GATGAGGTTG‑TTCAAGAATTCGTGGCGGAATggggacgagt                                                                                                                                       >  1:366983/1‑232 (MQ=255)
                                                                                                    ttGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGCGTAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGTCCGCGAACGGGCACCCGGCGAAGTGACATTTCAGGCCAGCCGGCCGTATCTGGGGTTGCGTTTTAACTCTGCCCGGCATCAGGTCGCGCAGGTTTA‑GTCGCTAGGGGGGGCCAC‑CAGCAGGTTGCTTAAATACCTCTTGGCGGCAGGGGGGGAAgc                                                                                                                                       >  1:941420/1‑238 (MQ=255)
                                                                                                      gggCAATTCCTTTTTCGGGAACCTGCTGGATATGCGTTTCGGGGGGGAAGCGAGCGGCGAATCGAAAGAGCTGGTCGAAGGCCGTGACCGTGAAGCCGGGGAAGTGAAAGTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGtga                                                                                                                                     <  1:975528/237‑1 (MQ=255)
                                                                                                      gagacaTGACTTGTTCGTGAACGTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGAACGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGtga                                                                                                                                     <  2:1321281/234‑1 (MQ=255)
                                                                                                      gAGCAATGACTTCTTCGTGAACTTGCTTGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGtga                                                                                                                                     <  2:179002/239‑1 (MQ=255)
                                                                                                       aGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTACCTCCGTCCTGCGTGCGGGGGCGGAAGTTTGCGCCAGTAGCGAAACCCCC‑CAGAAGGTTT‑TTAGAGACTTCggtgggggagggggggaagaggg                                                                                                                                    >  1:533773/1‑217 (MQ=255)
                                                                                                       aGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGGGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGGGATGCCCAC‑GGGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGGGaaaagggt                                                                                                                                    >  1:145469/1‑234 (MQ=255)
                                                                                                         cAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGACGTTTACGCCAGAACCGATGCCGCC‑GGGAAGTTTG‑TTAACAACTTCGTGGCGGCATGGGGGAAATggatga                                                                                                                                  >  2:240125/1‑239 (MQ=255)
                                                                                                          aaTGACTGCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGGTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACTCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGtgatg                                                                                                                                   <  2:131384/237‑1 (MQ=255)
                                                                                                              aCTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGGGAAAGTGATGAACCTc                                                                                                                             >  2:1240455/1‑239 (MQ=255)
                                                                                                                          caattagtcatatGCGTTACGAGGGGGAAGCGCCCGAAGAATCTAGATGGTCGTCCGTAGCCCGTGACCATGAATCTGGCGAAGGGAAATTCACGGCCGGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGCGTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGAc                                                                                                                 <  1:1181886/230‑1 (MQ=255)
                                                                                                                          aCTTGGTGGTTTTGCGTTGCGATGGGAAAGCGACCGACGAATGGAAAGAGTTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGAc                                                                                                                 <  1:1273132/239‑1 (MQ=255)
                                                                                                                           cTTGCTGGATTTGCGTTAAGGGTGGAAAGCGACCGGCAGATCGAAAGGGGGTTGCGAAGGCCGGGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGAc                                                                                                                 <  1:460184/238‑1 (MQ=255)
                                                                                                                           cTTGCTGGATATGCGTTACGAGTGGAAAGCCACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGAc                                                                                                                 <  2:399974/238‑1 (MQ=255)
                                                                                                                             tGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACCCCGTCCTGTGTCCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCACGGACACGTTT‑‑TTAAAGACTTCGTGGTGCCTGGGGTGAAGGGTATGAGCCCTACCCGTTTTGACctc                                                                                                              >  1:871034/1‑238 (MQ=255)
                                                                                                                              tcttgATTTGCGTTGCGGTTGGAAAGGCCCCGACGAAGTGAAAGAGCTTGTCGAAGGCCGTGACCGTGAAACCGGGGAAGTGAAATTTCCGGCCCGCCGTGCGGATTTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACctgc                                                                                                             <  1:602225/235‑1 (MQ=255)
                                                                                                                              gCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGGGATGAACCTCGACCGTTTCGACct                                                                                                               >  2:497466/1‑237 (MQ=255)
                                                                                                                                tGGATATGGGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACctgct                                                                                                            <  2:275105/238‑1 (MQ=255)
                                                                                                                                         gTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGGGTTTGGTTCTAACTCCGTCCTGGGCGCGGTGGCGGCAGTTTACTCCGGGAGCGATGCCACC‑GATAAGTTTT‑GTAAAGACATCGTGCAGGCATGGGGGAAAGTGATGAAAATCAACCGTTTcaagcagacgtaaagggg                                                                                                   >  1:644457/1‑221 (MQ=255)
                                                                                                                                           ttctaggggaaagggcacggctaaTGGAAATACCTGTTTGAAGGCTTTTACCGGGAATCCGGCGAAGTGAAATTGTCGGCCAGCCGGGCGTATCTGGGGTTTGGTTCTAACTGCGTCCTGCGGGCGGTGGCGGAAGTTTACGCCAGTAGCGATTCCCTC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGAcc                                                                                                 <  1:178697/216‑1 (MQ=255)
                                                                                                                                           tACGAGTGGAAAGCGACCGGCGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGGGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGAcc                                                                                                 <  2:1321671/238‑1 (MQ=255)
                                                                                                                                            aCGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGt                                                                                                                                                                          <  2:607463/165‑1 (MQ=255)
                                                                                                                                            aCGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGGGAAAGGGATGAACCTCGACCGTTTCGACCTGCTGTAAttggaaccc                                                                                               >  2:742158/1‑231 (MQ=255)
                                                                                                                                                  ggAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGGGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCac                                                                                         >  2:1052032/1‑238 (MQ=255)
                                                                                                                                                   gAAAGCTACCGACGAATCGAAAGAGCTGTTCGAAGGCCTTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAg                                                                                         <  2:366983/238‑1 (MQ=255)
                                                                                                                                                                  aggcaaaaggcgttacGAAGGCCGTGACCGTGAACCCGGGCAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCa                                                                         <  1:990616/224‑1 (MQ=255)
                                                                                                                                                                       aaGAGCGTTTCGAAGGCCGTGGCCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGGTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCg                                                                     <  2:1186208/238‑1 (MQ=255)
                                                                                                                                                                        agagCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGGGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCCGCGGCCGCTTCCTGGCAGgcgcg                                                                   >  1:604623/1‑238 (MQ=255)
                                                                                                                                                                            cttttCGAAGGCCGTGAACGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGaa                                                                <  2:145469/235‑1 (MQ=255)
                                                                                                                                                                            cTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGGGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAAc                                                               >  2:901943/1‑239 (MQ=255)
                                                                                                                                                                            cTGTTCGAAGGCCGGGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGaa                                                                <  2:533773/238‑1 (MQ=255)
                                                                                                                                                                                  gAATGCCGTGACCGTGAAACCGGCCAAGTGAAATTGTCGGCCAGCCGTTCGGATCGTGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCtt                                                         <  2:473604/239‑1 (MQ=255)
                                                                                                                                                                                  gAAGGCCGTGACCGTGAACCCGGCGAAGTGAAATTTACGGCCAGGCGTGCGGATCTGGTGTTTGGTTCTAACTCCGGCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCtt                                                         <  1:719002/239‑1 (MQ=255)
                                                                                                                                                                                    aGGCCGTGACCGTGAAACCGGGGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTa                                                       <  2:196429/239‑1 (MQ=255)
                                                                                                                                                                                    aGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTa                                                       <  2:29616/239‑1 (MQ=255)
                                                                                                                                                                                    aGGCCGGGACCGTGAAACCGGCGAAGGGAAATTTACGGCCAGCCGTGCGGAACTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTa                                                       <  2:1079301/239‑1 (MQ=255)
                                                                                                                                                                                     ggCCGTTACCGTGACACCGGGGAAGTGAACTTTACGGGCAGCCTTGCGGATCTGGTGTTTGGTTCGAACTCCGGCCTGCGTGCGGTGGAGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTa                                                       <  1:320273/238‑1 (MQ=255)
                                                                                                                                                                                     ggCCGTGACCGTTAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTa                                                       <  2:943/238‑1 (MQ=255)
                                                                                                                                                                                     ggCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTa                                                       <  2:871034/238‑1 (MQ=255)
                                                                                                                                                                                      gCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACctgctg                                                                                                           >  1:728901/1‑185 (MQ=255)
                                                                                                                                                                                       ccgtgaccgtgaAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTAc                                                      <  2:654249/237‑1 (MQ=255)
                                                                                                                                                                                                   aaCCGGGGAAGTGAAAGTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTggg                                        <  2:1184665/239‑1 (MQ=255)
                                                                                                                                                                                                   aaCCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTggg                                        <  2:619925/239‑1 (MQ=255)
                                                                                                                                                                                                   aaCCGGCGAAGGTAAATTTACGGCCGTGCGTGCGGATCTGGTGGTTGGTTCTAACTCCGTCCTGCGGGCGGTGGCGGAAGTTTACGCCAGTAGGGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTggg                                        <  2:317702/239‑1 (MQ=255)
                                                                                                                                                                                                      gggCGAAGGTAAATTTCGGGCCGCCCGGGCGGATGTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGcga                                     <  1:1240455/238‑1 (MQ=255)
                                                                                                                                                                                                           aaGTGAAATTTGCGGCCAGCCGTACGGATCTGGTGTTGGGTTCTAACTCCTGCCTGCGTGCGGGTGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGcgaacga                                 <  2:571585/238‑1 (MQ=255)
                                                                                                                                                                                                           aaGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGcgaacga                                 <  2:798450/238‑1 (MQ=255)
                                                                                                                                                                                                                aaaTTTACGGCCAGCCGTGCGGAACTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTa                           <  2:156628/239‑1 (MQ=255)
                                                                                                                                                                                                                  aTTTGCGGCCGGCCGTGGGGATCTGGTTGTTGGTTCTAACTCCGTCCCTCGGTGGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCGC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTaca                         <  1:1233318/239‑1 (MQ=255)
                                                                                                                                                                                                                    tttcggccggcGGTGGGGGACTGGGGTTTTGGTCTAACGCCGGGCGGGGTGCGGTGGCGGAAGTGTACGCCAGGAGCGAAGCCCAC‑GAGAAGTTTG‑ATAAAGACTTCGTGGCGGCATGGGTGAAAGGGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTacaca                       <  1:801780/236‑1 (MQ=255)
                                                                                                                                                                                                                    ttgcGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGGGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTacaca                       <  2:644457/236‑1 (MQ=255)
                                                                                                                                                                                                                     tccGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTacacac                      <  2:604623/237‑1 (MQ=255)
                                                                                                                                                                                                                      aCGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGGGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGGCATCTGACCCCGTTAAGCGTCTCCCTGCTGGCAGACGCCGAACGTTTGTCACCAACGTATAATAGGCGGAAGaaaaacaaaaaac                     >  1:251587/1‑230 (MQ=255)
                                                                                                                                                                                                                       cGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTg                    <  2:126745/239‑1 (MQ=255)
                                                                                                                                                                                                                          ccAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTTTAGGGGGCGAACGGAAACTACACACTGGAt                 >  2:1101003/1‑239 (MQ=255)
                                                                                                                                                                                                                             gCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGc                                                  >  2:805116/1‑203 (MQ=255)
                                                                                                                                                                                                                             gCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGACGGCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACAAACTGGAtct               >  2:434295/1‑238 (MQ=255)
                                                                                                                                                                                                                               cGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGAtct               <  2:427305/236‑1 (MQ=255)
                                                                                                                                                                                                                                    ggATCGGGTGTTTGGTTCTAACTCCGTCCTGCGTCCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTc       <  2:707990/239‑1 (MQ=255)
                                                                                                                                                                                                                                      aTCTGGGTTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGAGGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTC‑TTACCAGCGTATAGTGGGcg                                      <  2:1157691/205‑1 (MQ=255)
                                                                                                                                                                                                                                         tGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCg  <  2:466512/239‑1 (MQ=255)
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                             
GACCGCGCCGGAAATGACTGCGCTGGTGGGCGGCATGCGTGTACTGGGTGCCAACTTCGATGGCAGCAAAAACGGCGTCTTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGAAAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGCCAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGCGATGCCCAC‑GAGAAGTTTG‑TTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCG  >  NC_000913/4135645‑4136116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A