Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F9 I0 R1 260 102.5 2178490 93.2% 2030352 226.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,170,692 C→T 13.5% E1091E (GAG→GAA)  mfd ← transcription‑repair coupling factor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,170,6920CT13.5% 181.5 / 3.4 89E1091E (GAG→GAA) mfdtranscription‑repair coupling factor
Reads supporting (aligned to +/- strand):  ref base C (34/42);  new base T (10/3);  total (44/45)
Fisher's exact test for biased strand distribution p-value = 3.89e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GGAAGTGCAAAGAATTTGTAAATGTTGCAGATGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGGCGCTGGCAATACGTTTGTAGAACGACAGACGCGTGTTCACGTCAGGGATGAAATCATCTGGCA  >  NC_000913/1170457‑1170930
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                               
ggAAGTGCAAAGAATTTGTAAATGTTGCAGATGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGCCGGTAATGCTGCGGCTGTTTTTTCAGCAAACCAACAAACCAAGCCGGATAAACGGGATTTTTTTCg                                                                                                                                                                                                                                              >  2:347698/1‑239 (MQ=255)
  aaGTGCAAAGAATTTGTAAATGTTGCAGATGGGGGCCCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCgg                                                                                                                                                                                                                                             <  1:1064171/238‑1 (MQ=255)
     tGCAAAGAATTTGTAAATGTTGCAGATGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGCCCATCAAGGCGGTAATGCTGCGGCTGGTTTTGCAGCAAACCAATCAACCCAGCCGGATTAACGGGATTCTTCTCGCCaaa                                                                                                                                                                                                                                         >  2:763976/1‑239 (MQ=255)
     tGCAAAGAATTTGTAAATGTTGCAGATGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCACGGCGGTAATTCTCCGGCGGTTTTTGCAGCAAACCAACCAACCAGGCCGGATTAACGGGATTCTTTTCGGCaaa                                                                                                                                                                                                                                         >  2:711997/1‑239 (MQ=255)
     tGCAAAGAATTTGTAAATGTTGCAGATGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTTGTTTTGCAGCAAACCAATCAACCAGGCCGGACTAACCTGATTCTTCTCGGCaaa                                                                                                                                                                                                                                         >  1:1084684/1‑239 (MQ=255)
     tGCAAAGAATTTGTAAATGTTGCAGATGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTTCAGCAAACCAATCAACCAGTCCGGATTAACGTGGTTCTTCTCGGCaaa                                                                                                                                                                                                                                         >  1:63087/1‑239 (MQ=255)
     tGCAAAGAATTTGTAAATGTTGCAGATGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTTTCGGCaaa                                                                                                                                                                                                                                         >  1:431499/1‑239 (MQ=255)
     tGCAAAGAATTTGTAAATGTTGCAGATGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCaaa                                                                                                                                                                                                                                         >  1:590837/1‑239 (MQ=255)
     tGCAAAGAATTTGTAAATGTTGCAGATGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCaaa                                                                                                                                                                                                                                         >  1:330528/1‑239 (MQ=255)
     tGCAAAGAATTTGTAAATGTTGCAGATGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGGGATTCTTTTCGGCaaa                                                                                                                                                                                                                                         >  1:832626/1‑239 (MQ=255)
     tGCAAAGAATTTGTAAATGTTGCAGATGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTACAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCCGTCTTTCCGGCAAACCAATCAACCAGGCCGGATTAACGGGGTCCTTCTCGGCcaa                                                                                                                                                                                                                                         >  1:367510/1‑239 (MQ=255)
               ttGTAAATGTTGCAGATGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTCCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAAAGGGATTTTTTCCGGCAAATTCGATAAc                                                                                                                                                                                                                                >  1:904069/1‑238 (MQ=255)
                    aatggttgaggtGGGGGCCAAAAAACCCCCCCGTTTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCCCGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGcc                                                                                                                                                                                                                          <  2:811472/228‑1 (MQ=255)
                    aaTGTTGCAGATGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGcc                                                                                                                                                                                                                          <  1:300322/239‑1 (MQ=255)
                      tGTTGCAGATGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTTCCGGCAAATTCGATCAACCCGCC‑tt                                                                                                                                                                                                                       >  1:353610/1‑239 (MQ=255)
                      tGTTGCAGATGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGATGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTTTCGGCAAATTGGATAACACCGCC‑tt                                                                                                                                                                                                                       >  1:460574/1‑239 (MQ=255)
                         tGCAGATGGGGGCCCAGAAACGCCCCCGATTTACCATTAAGCTATCGTGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTtct                                                                                                                                                                                                                    <  1:1008314/239‑1 (MQ=255)
                                   ggCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTTTGCGCCAATACGATCACCCCGCC‑CTTCCCATTACCtt                                                                                                                                                                                                           >  2:260225/1‑238 (MQ=255)
                                   ggCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTCCCtt                                                                                                                                                                                                           >  1:846259/1‑238 (MQ=255)
                                           aaCGCCCCCGATTTACCATTAAGCGATCGGGTTCTTTTCCAGTTCACGCAAAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCt                                                                                                                                                                                                     <  1:214774/236‑1 (MQ=255)
                                           aaCGCCCCCGATTTACCATTAAGCGATCGCTTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCt                                                                                                                                                                                                     <  1:963003/236‑1 (MQ=255)
                                              gCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCCCGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGa                                                                                                                                                                                               <  1:347698/239‑1 (MQ=255)
                                               cccccGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCTGCTGTTTTTACAGCCAACCAATCAACCCGGCCGGATTACCGTGATTCTTCTCGGCAAATTCGATTACCCCGCC‑TTTCTCACTACCTTCCAGGTTCCTGa                                                                                                                                                                                               >  2:751776/1‑238 (MQ=255)
                                                    gATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGACTGTTTTTGCGTGCAACCAATCAACCAGGCCGGGGTAACGGGATTCTTCTCGGCAAATTACGTCAACCCACC‑TTTATCATTACCTTCCAGCTTCCCGATccccc                                                                                                                                                                                         >  2:241800/1‑238 (MQ=255)
                                                         aCCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGGGATTTTTCTCGGCCAATTCGATCACCCCCCC‑TTTCCCATTACCTTCCACCTTCCTGATCCCCAGttt                                                                                                                                                                                     >  2:31689/1‑238 (MQ=255)
                                                              tAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTgc                                                                                                                                                                                 >  1:655977/1‑237 (MQ=255)
                                                                     tCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGGAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCCGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGGTCACCCCCCCTTTTCTC‑TTACCTTCCCGCTTCCTGATTCCCAGTTTTTCCCCTTGCTg                                                                                                                                                                         >  2:104725/1‑238 (MQ=255)
                                                                       ccgTTCCCCTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTTAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGgcg                                                                                                                                                                      <  1:396954/238‑1 (MQ=255)
                                                                           ccctttCCATTTCACCCATAAACTGGCGTACCCTTTCGATACGCTTTTTCCGCTCACCCAAATCCTGAATAAATTCCAGGCGCGTCCGCCCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGa                                                                                                                                                                  <  2:669108/235‑1 (MQ=255)
                                                                            ctctTCCAGTTCACGCATAAACTGGCGTACCCATTCGATCCGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTGTTTGCAGCACACCAATCAACCAGGCCGGATTAACGTGATTCTTTTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTTATCCCCAGTTTCTGCGATTGCTgggcgagac                                                                                                                                                                 >  2:810647/1‑232 (MQ=255)
                                                                            cccctCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGGGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTTGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGAc                                                                                                                                                                 <  1:189122/235‑1 (MQ=255)
                                                                                 cccttccccccttAAACTGGGTTCCCCATTCGATACGCGTTTTCCGCTCACGCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGACCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCa                                                                                                                                                            <  2:431499/227‑1 (MQ=255)
                                                                                 ccAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTAACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCa                                                                                                                                                            <  1:460555/239‑1 (MQ=255)
                                                                                 ccAGTTCACCCAAAAACTGGCGTACCCATTCGAATCGCCTTTGCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGACGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCa                                                                                                                                                            <  1:98114/239‑1 (MQ=255)
                                                                                       cACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑t                                                                                                                                                                                                                        >  2:590658/1‑173 (MQ=255)
                                                                                       cACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑t                                                                                                                                                                                                                        <  1:590658/173‑1 (MQ=255)
                                                                                       cACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAatat                                                                                                                                                        >  1:669108/1‑237 (MQ=255)
                                                                                       cACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATc                                                                                                                                                       >  1:952388/1‑238 (MQ=255)
                                                                                         cGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑t                                                                                                                                                                                                                        <  1:1030131/171‑1 (MQ=255)
                                                                                         cGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑t                                                                                                                                                                                                                        >  2:1030131/1‑171 (MQ=255)
                                                                                         cGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATCCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGGTTTTTCTCGGCAAATTCGATCACCCCCCC‑CTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTCGGCTTCCTgcgcccaacgggccaattccgc                                                                                                                                                    >  2:358032/1‑218 (MQ=255)
                                                                                               aaCTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGGGATTCTTCTCGGCCAATTCGATCACCCCGCC‑CTTTCCATTACCTTCCATCTTCCTGATCCCCAGTTTCTGCCCTTGCTGGGGCCGACGGGCAAAAACCAACAggga                                                                                                                                              >  2:307198/1‑238 (MQ=255)
                                                                                                    gCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGACTAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGATGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTTTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATACCCCGCAGGGTAccc                                                                                                                                          >  1:860893/1‑236 (MQ=255)
                                                                                                    gCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTAcgcg                                                                                                                                         <  2:590837/239‑1 (MQ=255)
                                                                                                    ccttccccATTCGCTCCGCGTTTTCCGCTCCCTCAAATCCTGAAAAAATTTCAGGCCCGTCGGACCATCAAGGGGGTAATCCTGCGGCTTTTTTGGCAGCAAACCAAGCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCCCCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTAcgcg                                                                                                                                         <  2:46391/234‑1 (MQ=255)
                                                                                                     cttccccTTTCGATCCGCCTTTTCCGCTCACCCAAATCCTGAAAAAATTTCAGGCGCGGTGGACCCGCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACgcgc                                                                                                                                        <  2:723608/235‑1 (MQ=255)
                                                                                                     cGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTAcgcg                                                                                                                                         <  1:711997/238‑1 (MQ=255)
                                                                                                      ttgccctttctcttcgctgtttCCGCTCATCCAAATCCTGAATAAATTTCGTGCGCGCCGGAACATCAAGGCGGGAATGCTGCGGCTTTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCCCCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGTTCCgcgc                                                                                                                                        <  2:367510/219‑1 (MQ=255)
                                                                                                        aCCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCgg                                                                                                                                     <  1:758689/239‑1 (MQ=255)
                                                                                                              tCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCCAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGAAGGGCCATATCCAGCAGGGTACGCGCCGGGTCTg                                                                                                                                >  1:283709/1‑238 (MQ=255)
                                                                                                              tCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTg                                                                                                                                >  1:871117/1‑238 (MQ=255)
                                                                                                              tCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACCCGCCGGATCTg                                                                                                                                >  1:71168/1‑238 (MQ=255)
                                                                                                                 tttcgccTTTTCCGCTCCCTCAAATCCTTATTAATTTTCAGGGGTGTCGGACCAAACAGGCGGTAATGCTGCGGCTTTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGgcag                                                                                                                            <  2:505785/236‑1 (MQ=255)
                                                                                                                 gtccgcgTTTTCCCCTCCCTCAAATCCTGAATAAATTTCAGGCGCGTCGGACAAACAAGGTGGTAATGCTGCGGTTGTTTTTGCAACAAACCAATCAACCAGGCCGGATTACCGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGgcag                                                                                                                            <  2:283709/236‑1 (MQ=255)
                                                                                                                  tACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGgcagc                                                                                                                           <  1:183794/239‑1 (MQ=255)
                                                                                                                   accggTTTTCCGCGCACACAAATCCGGGATAAATTTCAGTGCCGGCGGACCATCAAGGCGGAAATGCTGCGGCTGTTTGTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATCCGATCTCCCCGCC‑TTTCTCATTACCTTCCAGCGTCCTGATCCCCAGGTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGgcagc                                                                                                                           <  2:653992/234‑1 (MQ=255)
                                                                                                                             cGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGcg                                                                                                                <  1:10120/239‑1 (MQ=255)
                                                                                                                                 cactcaAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTACAGCTTCCTGATCCCCAGTTTCTGCCCTTGCTGGCGCAGACGGGCAATAACCAACAGGGTACGCGCCGGATCTGGCAGCAGGCCGGAGcgatag                                                                                                            >  2:158530/1‑237 (MQ=255)
                                                                                                                                      aaaTCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACggg                                                                                                                                                              <  1:92639/184‑1 (MQ=255)
                                                                                                                                        tcccTGCATAATTTTCAGCGCCGCTGGACCATCAAGGCGGTATTGTTGGGGCTGTTTTTGCACCAAACCATACAACCAGGCCTGATTAACGTGATTCTTCTCGGCAAATTCGATCCCCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTGCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCt                                                                                                     <  2:460574/237‑1 (MQ=255)
                                                                                                                                             gAAAAATTTTGAGGGGCGTCCGAACACCAAGGCGGTAAGTCCGGGGGTGTTTTGGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATGCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCGGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACt                                                                                                <  2:904069/239‑1 (MQ=255)
                                                                                                                                              aaTAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCCGCTTCCTGAACCCCAGTTTCTCGGCTTGCTGGCGCAGACGGGCAATATCCACCAGGGGACCCGCCGGGTCTGGCACCAGGGCGAAGGGAACCAAAAGCACCACtt                                                                                               >  2:513777/1‑239 (MQ=255)
                                                                                                                                              aaTAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTTGCGCAGTCGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCCACAGGCCGAAGCGCTCGATAAACCCGACtt                                                                                               >  1:991052/1‑239 (MQ=255)
                                                                                                                                                            gggTCGGACCATAAAGGCGGTAATGCTGCGGCTGTTTTTGCAGAAAACCAAACAACCAGGCCGGATTAACGGTATTCGTCCCGGAAAATTCGATCCCCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGt                                                                                 <  2:952388/237‑1 (MQ=255)
                                                                                                                                                             cgTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCCCTTTCTGGCGCAGACGGGCAATATCCCGCAGGGAACACGCCGGTACTGGCGGCAGGCCGAGGCGGTCGCTAAACCCGGCTTTGATATCtttccggt                                                                                >  2:266804/1‑233 (MQ=255)
                                                                                                                                                                        cAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGtt                                                                     >  1:259892/1‑239 (MQ=255)
                                                                                                                                                                            gCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTg                                                                  >  1:692623/1‑238 (MQ=255)
                                                                                                                                                                               gaaagtctgcGGGTGTTTTGGAAGCAAACCCAGCAACCAGGCCGCATTAACGAGATTCTTCCCGGACAATTCCAGCACCCCCCC‑TTTCTCATTACCTTCCAGCTGCCTGATCCCCAGGTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGgcg                                                               <  2:655977/232‑1 (MQ=255)
                                                                                                                                                                               ctaagtgtgctgcTGTTTTTGCACAAATTCAATCACCCAGGCCGGTTTAACTGGATTCTTTCGGGCAAATGCGATCCCCACGCT‑TTTCCCCTGACCTTCCAGGTTCCTGATCCCCGGTCTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGgcg                                                               <  2:839788/231‑1 (MQ=255)
                                                                                                                                                                                  aTGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCCAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGGACGCGCCGGATCTGGCAGCAGGACGAAGCGATCGGTAAGCTCGACTTTGGACTCTTCCCGTTCGGTTTCCGGTTTGGGGCggg                                                           >  1:459955/1‑239 (MQ=255)
                                                                                                                                                                                  aTGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTTATCCCCCGTTTCTGCGCTTGCTGGCGCCGACGGGCAATATCCAGCAGGGTACGCGCCGGCTCTGGCAGCAGGCCGAAGCGACCGGTAAGCTCGACTTTGGTCTCTTCCAGCTCGTGTTCCATTTTGTGGCTg                                                            >  1:530743/1‑238 (MQ=255)
                                                                                                                                                                                       gggggtttttttGCAGAAACCCAATCACCCAGGCCGGATTAACGTGATTCTTCGCGGCAAATTCGATCCCCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGGCGCTGGCAAt                                                       <  2:71168/231‑1 (MQ=255)
                                                                                                                                                                                          gCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGTTCTCTTCCAGTTCGTTTTCCGTTTTGACGCTGACaaaaagt                                                   >  2:231215/1‑234 (MQ=255)
                                                                                                                                                                                            tttttttggcgaaactcAATCCACCAGCCCGGTTTTACGGGATTCGTCCCGGAAAATTCCATCCCCCCGCC‑TTTCTCATTACCTCCCAGCTTCCTGATCCCCAGTTGCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGGCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGGCGCTGGCAATACGtt                                                  <  2:412773/222‑1 (MQ=255)
                                                                                                                                                                                            tttttttGCAGATAACCAATCCACCATGCCGGATTTACGGTATTTTGTTGGGCAAATTCGAGCCCCCCGCC‑TTTCTCATTACCTGCCAGCTTCCTGATCCCCAGTTTCTGCGCGTGCTGGCGCAGACTGGCAAGATCCAGGAGGGTTCGCGGCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTACGTGTTGGCGCGGGCAATACGtt                                                  <  2:412753/236‑1 (MQ=255)
                                                                                                                                                                                            tttttttGCAACAACCCAATCAACCTGGCCGGTTTAACGTGTTTCTTCCCGGCAAATTCGCTCCCCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGGCGCTGGCAATACGtt                                                  <  2:459955/236‑1 (MQ=255)
                                                                                                                                                                                            tGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACTTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTTCCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGGCGCTGGCAATACGtt                                                  <  1:503749/238‑1 (MQ=255)
                                                                                                                                                                                                tttgacccaAACCAATCACCCCGGCGGGTTTACTCTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTCCCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGGCGCTGGCAATACGTTTGTAg                                             <  2:353610/232‑1 (MQ=255)
                                                                                                                                                                                                  tccaacaAACCAACCAACCAGGCCGGTTTAACGTGATTCTTCTCGGCAAATTCGATCCCCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGGCGCTGGCAATACGTTTGTAGaa                                           <  2:259892/234‑1 (MQ=255)
                                                                                                                                                                                                    cagcaAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGGCGCTGGCAATACGTTTGTAGAACg                                         >  1:275201/1‑239 (MQ=255)
                                                                                                                                                                                                                 aaCCAGGGCGGATTAACGTGATTCTTCACGGCAAATTCGATCCCCCCGCC‑TTTCTCAGTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGGAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGGCGCTGGCAATACGTTTGTAGAACGACAGACGCGTGtt                            <  1:266804/239‑1 (MQ=255)
                                                                                                                                                                                                                 aaCCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCCCCCCGCC‑TTTCTCATTCCCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGGCGCTGGCAATACGTTTGTAGAACGACAGACGCGTGtt                            <  1:260225/239‑1 (MQ=255)
                                                                                                                                                                                                                 aaCCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCCCCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGGCGCTGGCAATACGTTTGTAGAACGACAGACGCGTGtt                            <  1:763976/239‑1 (MQ=255)
                                                                                                                                                                                                                    cAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGGCGCTGGCAATACGTTTGTAGAACGACAGACGCGTGTTCAc                         >  1:415778/1‑239 (MQ=255)
                                                                                                                                                                                                                      ggCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCCCCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGGCGCTGGCAATACGTTTGTAGAACGACAGACGCGTGTTCACGt                       <  1:31689/239‑1 (MQ=255)
                                                                                                                                                                                                                      ggCCGGATTAACGTGATTCTTCCCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGGCGCTGGCAATACGTTTGTAGAACGACAGACGCGTGTTCACGt                       <  1:307198/239‑1 (MQ=255)
                                                                                                                                                                                                                       tccGGATTAACGTTCTTCTCTTCTGCAAATCCGATCCCCCCGCC‑TTTCTCATTGCCTTCCAGCTTCCTGATCCCCAGTTTCGGCGCGTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGGCGCTGGCAATACGTTTGTAGAACGACAGACGCGTGTTCACGTc                      <  1:428093/238‑1 (MQ=255)
                                                                                                                                                                                                                            aTTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGGTTTCCGTTTTGGCGCTGGCAATCGGTTTGTAGAACGACAGACGGGGGTTCACGCCAGGGa                 >  2:760628/1‑239 (MQ=255)
                                                                                                                                                                                                                                     aTTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGGCGCTGGCAATACGTTTGTCGAACGACAGACGCGTGTTCACGTCAGGGATGAAatca         >  1:620707/1‑238 (MQ=255)
                                                                                                                                                                                                                                          tctcGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTAcgcg                                                                                                                                         >  2:808456/1‑105 (MQ=255)
                                                                                                                                                                                                                                          tctcGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTAcgcg                                                                                                                                         <  1:808456/105‑1 (MQ=255)
                                                                                                                                                                                                                                           ctcGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGGCGCTGGCAATACGTTTGTAg                                             >  1:142383/1‑196 (MQ=255)
                                                                                                                                                                                                                                           ctcGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGGCGCTGGCAATACGTTTGTAg                                             <  2:142383/196‑1 (MQ=255)
                                                                                                                                                                                                                                           ctcGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGGCGCTGGCAATACGTTTGTAGAACGACAGACGCGTGTTCACGTCAGGGGTGAAATCATCTGGCa  >  1:712642/1‑239 (MQ=255)
                                                                                                                                                                                                                                           ctcGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGGCGCTGGCAATACGTTTGTAGAACGACAGACGCGTGTTACCGTCAGGGATGAAATCATCTGGCa  >  1:791951/1‑239 (MQ=255)
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                               
GGAAGTGCAAAGAATTTGTAAATGTTGCAGATGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCC‑TTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAGCAGGCCGAAGCGATCGATAAGCTCGACTTTGATCTCTTCCAGTTCGTTTTCCGTTTTGGCGCTGGCAATACGTTTGTAGAACGACAGACGCGTGTTCACGTCAGGGATGAAATCATCTGGCA  >  NC_000913/1170457‑1170930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A