Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F9 I0 R1 260 102.5 2178490 93.2% 2030352 226.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,674,184 T→G 12.8% V275G (GTG→GGG)  yhjD → inner membrane putative BrbK family alternate lipid exporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,674,1840TG12.8% 231.4 / 2.3 100V275G (GTG→GGG) yhjDinner membrane putative BrbK family alternate lipid exporter
Reads supporting (aligned to +/- strand):  ref base T (32/52);  new base G (13/2);  total (46/54)
Fisher's exact test for biased strand distribution p-value = 5.69e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 101 total aligned reads displayed.

TGATTGTGACGCTTTCGATCACCTCGGTTGCCGGTTCGGCGCAGCAAATGATTATTAGCGCCCTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCACCGCCGAATATAAAGACGACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATT  >  NC_000913/3673947‑3674422
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                
tGATTGTGACGCTTTCGATCACCTCGGTTGCCGGTTCGGCGCAGCAAATGATTATTAGCGCCCTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCTTCCG‑CGCAACAAAGCCCTGATTCCCGGTACATTTCTGT‑CTGC‑TCTTGGTTTTGAAGTg                                                                                                                                                                                                                                                 >  1:529542/1‑239 (MQ=255)
      gggcggtttCGATCCCCTCGGTTGCCGGTTCGGCGCAGCAAATGATTATTAGCGCCCTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTaaa                                                                                                                                                                                                                                          <  1:509663/233‑1 (MQ=255)
            tttgcacccccTTGGTTGCCGGTTCGGCGCAGCAAATGATTATGTGCGCCCTGTCCCGTAACAGCATTGTGTGGCTGAAACCGACTTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCGGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGtg                                                                                                                                                                                                                                    <  2:486697/230‑1 (MQ=255)
            tttCGGTCCCCCGGGGTGGCGGTTCGGCGCAGCAAATGATTATTAGCGCCCTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGGTTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGtg                                                                                                                                                                                                                                    <  2:588850/239‑1 (MQ=255)
            tttCGATCCCCCCGGTTGCCGTTTCGGCGCAGCAAATGTTTTTTAGCGCCCTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGtg                                                                                                                                                                                                                                    <  2:433397/239‑1 (MQ=255)
            tttCGATCACCTCGGTTGCCGGTTCGGCGCAGCAAATGATTATTAGCGCCCTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCCCCCTCCGCCGAAAAAAACCCCGGTTTCCGGGAAC‑TTTCTGG‑CTGC‑CATTTGTTTTTAAATG‑GTTAAAAACGtg                                                                                                                                                                                                                                    >  2:717966/1‑239 (MQ=255)
            tttCGATCACCTCGGTTGCCGGTTCGGCGCAGCAAATGATTATTAGCGCCCTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCCAAAAAGCCCTGATTCCCGGAACATTTATGG‑CTGC‑TATTGGTTTTTAAGGG‑GTTAAAAtgcgg                                                                                                                                                                                                                                    >  1:436125/1‑235 (MQ=255)
            tttCGATCACCTCGGTTGCCGGTTCGGCGCAGCAAATGATTATTAGCGCCCTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGtg                                                                                                                                                                                                                                    <  1:108442/239‑1 (MQ=255)
            tttCGATCACCTCGGTTGCCGGTTCGGCGCAGCAAATGATTATTAGCGCCCTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCCGCCG‑CGCAAAAAAGCCCTGATTCCCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑AGTAAAATCGtg                                                                                                                                                                                                                                    >  1:639717/1‑239 (MQ=255)
            tttCGATCACCTCGGTTGCCGGTTCGGCGCAGCAAATGATTATTAGCGCCCTGCACCTGAACAGCATTAAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGGCCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTTTGG‑CTGC‑TTTTGGGTTTGTAGGG‑GTTTAAAACggg                                                                                                                                                                                                                                    >  2:821871/1‑237 (MQ=255)
            tgttgATCTCGTCGCTTGCCGGTTCTGCGCAGCTAATGGTAATTTGGCGCCTGTCGCGAAAATGCATGCAGGGGGTGAAACCGACGTGGCGGTTGATTGGCCTGGTGATTTCCATCTTCGCCAACTTTCTGCCTTTCTTCTGGATCTTCTGGCGGTTGGCGTGACACCGGCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTTAAGTG‑ATTAAAATCGtg                                                                                                                                                                                                                                    <  2:332166/235‑1 (MQ=255)
            cttCGTTCCCCCCGGTTGCGGTTTCGGGGCAGCAAATGATTATTGGGGCCCTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGtg                                                                                                                                                                                                                                    <  2:421033/238‑1 (MQ=255)
             ttCGATCCCCTCGGTTGCCGGTTCGGCGCAGCAAATGATTAGTAGCGCCCTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGtg                                                                                                                                                                                                                                    <  1:606086/238‑1 (MQ=255)
             ttCGATCCCCTCGGTTGCCGGTTCGGCCCAGCAAATGATTATTAGCGCCCTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGtga                                                                                                                                                                                                                                   <  1:390226/239‑1 (MQ=255)
              tCGATCACCTCGGTTGCCGGTTCGGCGCAGCAAATGATTATTAGCGCCCTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCCCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCCCGGAACATTTCTGG‑CTGT‑TATTGGTTTTTAATTG‑GTTAAAATCGtgat                                                                                                                                                                                                                                  >  1:72500/1‑239 (MQ=255)
                  gccccTCGGTTGCCGGTTCGGCGCAGCAAATGATTATTAGCGCCCTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGAc                                                                                                                                                                                                                               <  1:204985/235‑1 (MQ=255)
                      cTCGGTTGCCGGTTCGGCGCAGCAAATGATTATTAGCGCCCTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑GTTAAAATCGGGATGACCTac                                                                                                                                                                                                                           >  1:71952/1‑238 (MQ=255)
                        cGGTTGCCGGTTCGGCGCAGCAAATGATTATTAGCGCCCTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CCCAAAAAAGCCCCCATTCTCGGGACAATTCTGGTCTGT‑ATTTGGTTTTTAGGGG‑TTAAAAATctgaagaactaaac                                                                                                                                                                                                                          >  2:709031/1‑225 (MQ=255)
                              ccGGTTCGGCGCAGCAAATGATTATTAGCGCCCTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCT‑CGCAAAAAAGCCCTGATTCGCGGTAAATTTCTTG‑CTGC‑CATGGGGTTTGAAGGG‑ATTAAAACCGTGATGACCTACACCCTGCCa                                                                                                                                                                                                                  >  1:468437/1‑239 (MQ=255)
                              ccGGTTCGGCGAAGCAAATGATTATTAGCGCCCTGCACCTGAACAGCATTGAGTGGCTGGAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGATGCCGCGCGACCCTCCG‑CGCAACAAAGGCCAGTGTCGCGGAACCATTCTGG‑CTGG‑CTTTGGTTTTGAAGTG‑ATTaaaaacatatgacccaacaccccccc                                                                                                                                                                                                                   >  2:383532/1‑216 (MQ=255)
                                ggTTCGGCGCAGCAAATGATTATTAGCGCCCTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTTCCGCCCCCACCTCCC‑CTCAAAAAAGCCCTGCTTCCCGGAACATTTCTGG‑CTGC‑CTTTGGGTTTTAAGTG‑GTTAAAATCGGGGATACCTAAACCCTCCCacc                                                                                                                                                                                                                >  2:638567/1‑237 (MQ=255)
                                     ggCGCAGCAAATGATTATGAGCGCCCTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCGGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCT‑G‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTtga                                                                                                                                                                                                           <  1:871614/238‑1 (MQ=255)
                                                  ttttttaGGGCCCTGCCCCGTAACAGCATTGAGTGGCTTAAACCGAGGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCctc                                                                                                                                                                                              <  2:131893/235‑1 (MQ=255)
                                                      ttaGCGCCCTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCCCGCCACCCTCCC‑CGCAAAAAAGCCCCTATTCGCGGAACATTTCTGG‑CTGC‑TCTTGGGTTTGAAGTG‑ATTAAAATCGGTAAGCCCTACCCCCTGCCCACGTTTTGGAAAACCCCCCCTTgc                                                                                                                                                                                          >  2:791140/1‑239 (MQ=255)
                                                       taGCGCCCGGCTCCTGAACAGGATTGAGTGGATGAAACCGACGTGGCGAATGATTGGCCTGGTGATTTCCATCTTCGTCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGgcg                                                                                                                                                                                         <  1:948905/239‑1 (MQ=255)
                                                           gcCCTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTTGCCTGGCGCTTTCCATCTTCGCCCACTATCTGCTTTTCTTCTGGCCCTTCTGGCGGTTGCCGCGCCACCGTCCC‑CGACACCAAGCCCTTATTCGCGGGACCTTTTCGG‑CGGC‑TCTTGGTTTTTAAGGG‑CTTATCATCGGGCAGACCTACACCCTTCCATAGTTTATGAAACTCACCTCCGGCgc‑ag                                                                                                                                                                                     >  2:690647/1‑238 (MQ=255)
                                                            cccTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTTCGG‑CTGC‑TTTTGGTTTTTAAGGG‑GTTAAAATCGGGTTGACCTACACCCTGCCCCCGTTGTTGAAAACCCCCCCCGGGgc‑ac                                                                                                                                                                                     >  2:54929/1‑236 (MQ=255)
                                                             ccTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGGTGGCGCGCCACCGTCCC‑CCCAAAAAAGCCCTGGTTCGCGGAACATTTTTGG‑CTGCTTCTTGGTTTTG‑AGTG‑GTTTAAAACGTGATGGCCTACACCCCCCCACCGTTGGTGAAATCCCCctcctgggccagaa                                                                                                                                                                                   >  2:809837/1‑228 (MQ=255)
                                                              cTGCACCTGAACGGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGGCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCAtt                                                                                                                                                                                 <  1:490005/239‑1 (MQ=255)
                                                              cTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCCAAAAAGCCCTGATTCCCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGGGATGACCTACACCCTGCCATCGTTGTTGAAATACCCCCCTGGCGC‑ACCAtt                                                                                                                                                                                 >  1:391106/1‑239 (MQ=255)
                                                              cTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCAtt                                                                                                                                                                                 <  1:717966/239‑1 (MQ=255)
                                                                    cTGAACAGCATTGAGGGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTc                                                                                                                                                                           <  1:383532/239‑1 (MQ=255)
                                                                      gAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGGTTTGAAGTG‑ATTAAAATCGTGATGACCTCAACCCTGCCCACGTTGATGAAATCCCCCCCTGGCGC‑CCCCTTTGGTTCCg                                                                                                                                                                         >  1:836196/1‑239 (MQ=255)
                                                                        acctctttGTGTTGCTGAAACCGACGTGGCGTTTGGTTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTg                                                                                                                                                                       <  2:66237/233‑1 (MQ=255)
                                                                         cAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTTCCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGGGATGACCTACACCCTGCCCTCGTTTATGAAATCCCCCCCTGGGGC‑ACCATTTTGTTCCgggg                                                                                                                                                                      >  2:839034/1‑236 (MQ=255)
                                                                           gCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTTCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑CATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTTATTGAATCCCCCTCTGGCGC‑TGCATTTGGTTCCggcctt                                                                                                                                                                    >  1:575344/1‑234 (MQ=255)
                                                                           gCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCCCTGGGCC‑GGCATTTGGTTCCTTCCTg                                                                                                                                                                    >  1:293273/1‑239 (MQ=255)
                                                                            cATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGGGATGCCCTACAACCTTCCATCGTTGATGAAATCCCCCTTTGGCCC‑AGCATTTGGTTCCGGTCTgg                                                                                                                                                                   >  1:66237/1‑239 (MQ=255)
                                                                            cATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCCCGGGACATTTCTGG‑CTCC‑TTTTGGTTTTGAAGTG‑ATTAAAATCGGGATGACCTACACCCTGCCCTCCTTATTGAAATCCCCCTCTGTCGC‑AGCATTTGGTTCCCGGCTgg                                                                                                                                                                   >  1:761930/1‑239 (MQ=255)
                                                                            cATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCCCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTAGCGGAACATTTCTGG‑CTTC‑TATTGGTTTTTAAGGG‑ATTAAAATCGTGCAGACCTACCCCCTGCCATCGTTGTTGAAATCCCCCTCTGGCGC‑GACATTTTGTTCCGGGCCgg                                                                                                                                                                   >  2:68866/1‑239 (MQ=255)
                                                                            cATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGGTGCCGCGCCACCGTCCG‑CGCAAACAAGCCCCGCTTTCCGGGACCTTTCTGG‑CTGC‑TATTGGTTTTGAAGGG‑ATTTAAATCCGGCTGCCCTTAACCCTGCCATCGTTGATGGAAACCCCCTCTGGCGCGAACATTTGGtctctgccgg                                                                                                                                                                    >  2:332663/1‑230 (MQ=255)
                                                                                 aGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTTAAGTG‑ATTAAAATCGGGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCAATTGGTTCCGTGCTggg                                                                                                                                                                  >  1:732248/1‑235 (MQ=255)
                                                                                 aGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGgcg                                                                                                                                                                                         <  2:758491/213‑1 (MQ=255)
                                                                                 aGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTAAACCCTGCCATCGTTGATGAAATCCCCCTCTGgcg                                                                                                                                                                                         >  1:758491/1‑213 (MQ=255)
                                                                                      cTGAAACCGCCGTGGCGATTGGTTGGCCTGGCGATTTCCATCTTCGCCGACTATCGGCTTTTCTTCTGGATCTTCTGGCGGTTTCCCCGCCACCATCCG‑CACAAAAACGCCCTGGTTACCGGTATCTTTCTGG‑CTGC‑TTTTGGTTTTGAAGAGAATTAAAACCAT‑ATGACCTAAACCCCGCCCTCCTTTGTGAAAAACCACTCCGGCCG‑AGCATTGGGGTCCGGGCTggggaagtggga                                                                                                                                                         >  2:1075371/1‑231 (MQ=255)
                                                                                      cTGAAACCGAGGTGGCGTTTGGTTGGCCTGGCGATTTCCATCTTCGCCAACCTTCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATgg                                                                                                                                                          <  2:683399/238‑1 (MQ=255)
                                                                                      cTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCCAAAAAGCCCTGATTCGCGGAACCTTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTAAACCCTGCCATCCGTGATGAAATCCCCCCCTGGCGT‑CGCATTTGGTTCCGTGCTGGGGGTGATGGc                                                                                                                                                         >  1:1081158/1‑239 (MQ=255)
                                                                                      cTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCCAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGGG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑CGCATTTGGTTCCGTGCTGGGGCTGATg                                                                                                                                                           >  1:824935/1‑237 (MQ=255)
                                                                                      cTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTTGTTTTGAAGGG‑ATTAAAATCGGGATGACCTACACCCCGCCATCGGTGATGAAATACCCCCCTTGGGC‑AGCATTTGGGTCCGGGCTGGGGcggggggg                                                                                                                                                         >  2:600916/1‑232 (MQ=255)
                                                                                      cTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATg                                                                                                                                                           >  1:147434/1‑237 (MQ=255)
                                                                                      cTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGGG‑CTTAAAATCGTGATTACCTAACCCCTGCCCTCGTTTTTGAAATCCCCCCCTTGGGC‑GACCTTTGGTTCCGGGCGgggggggggggg                                                                                                                                                         >  2:377768/1‑231 (MQ=255)
                                                                                      cTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGGG‑ATTAAAATCGTGATGACCTAAACCCTGCCATCCTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGGCCTGGGGCTGGTg                                                                                                                                                           >  1:548008/1‑237 (MQ=255)
                                                                                      cTGAAACCCGCGTGGCGGTTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCGGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATgg                                                                                                                                                          <  2:827124/238‑1 (MQ=255)
                                                                                        gAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCa                                                                                                                                                        <  1:877527/238‑1 (MQ=255)
                                                                                         aaaCCGAGGTGGGCATGGATTGGCCTTGCGAGTTCCAACCTCGCCAACTATCTGCTTTTGTTCTGGATCTTCTGGGGGTTGCCGCGCCAGCGTTCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCAt                                                                                                                                                       <  1:787981/238‑1 (MQ=255)
                                                                                                   ggCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGtgat                                                                                                                                                                                                                                  >  1:1063905/1‑154 (MQ=255)
                                                                                                   ggCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGtgat                                                                                                                                                                                                                                  <  2:1063905/154‑1 (MQ=255)
                                                                                                        tttttttgCCTGGTGTTTTCCATCTTCGCCAATTTTCTGTTTTTCTTCCGGTACTTCTGGCGGTTGCCGGGCCCCCGTCCG‑CGAAAAAAAGCCCTGATTCGCGGAACCTTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACCCCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGc                                                                                                                                       <  2:675744/232‑1 (MQ=255)
                                                                                                         tgattgGCCTGGCCATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGc                                                                                                                                       <  1:600916/238‑1 (MQ=255)
                                                                                                             tgGCCTTGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGtt                                                                                                                                  <  1:307594/239‑1 (MQ=255)
                                                                                                             tgGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGtt                                                                                                                                  <  1:569476/239‑1 (MQ=255)
                                                                                                                  ttgccttgtCCATCTTCGCCACATATCTTCTTTTCTTCTGGATCTTTTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACg                                                                                                                             <  2:508804/231‑1 (MQ=255)
                                                                                                                  tGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACg                                                                                                                             <  1:839034/239‑1 (MQ=255)
                                                                                                                    gCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGGGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCCTTTTTCTATTTCTTCCCCCGtttttcgcg                                                                                                                           >  2:1062668/1‑233 (MQ=255)
                                                                                                                           ccctCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTgc                                                                                                                    <  1:1062668/236‑1 (MQ=255)
                                                                                                                              tCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTGcgcg                                                                                                                 <  1:54929/239‑1 (MQ=255)
                                                                                                                               cTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTTcgcg                                                                                                                 >  1:34058/1‑238 (MQ=255)
                                                                                                                                         tATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACg                                                                                                                             <  1:23501/216‑1 (MQ=255)
                                                                                                                                           tttttttttCTTCTGGATCTTCTGGGGGTTGCCGGGCCCCCGTCCG‑GGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCa                                                                                                    <  2:72500/234‑1 (MQ=255)
                                                                                                                                           gcttcTTTTCCTCTGGATCTTTGGGGGGTTGCCGCCCCCCCGGCCG‑CCGAAAAAAGCCCTTATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACCCCCGGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCa                                                                                                    <  2:575344/235‑1 (MQ=255)
                                                                                                                                                ttttttttTGGTTCTTCGGGGGGTTTCCGGGCCACCGTCCG‑CGCAAAAAAGCCCTGATCCGCGGAACTTTTCTGG‑TTTC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGCCCTACGCCCTGCCAGCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCAccgcc                                                                                               <  2:840391/239‑1 (MQ=255)
                                                                                                                                                ttttttttTGGATTTTCGGGGGGTTGCCGCCCCCCCGTCCG‑GACAAAAAAGCCCTGATTCGCGGAACTTTTCTGG‑CTGT‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCAccgcc                                                                                               <  2:824935/239‑1 (MQ=255)
                                                                                                                                                ttttttTCTGGTTTTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGACAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCAccgcc                                                                                               <  2:836196/239‑1 (MQ=255)
                                                                                                                                                ttttttTCGGGATTTTTGGGGGGTTGCCGCGCCCCCGTCCG‑GGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCAccgcc                                                                                               <  2:293273/239‑1 (MQ=255)
                                                                                                                                                ttttCTTCTGGATCTTCTGGCGGTTGCCGGGCCACCGTCCG‑CGCAAAAAAGGCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCAccgcc                                                                                               <  1:1050737/239‑1 (MQ=255)
                                                                                                                                                 tttCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCAccgcc                                                                                               <  1:821871/238‑1 (MQ=255)
                                                                                                                                                  ttcttcgtgtttttctGGCGTTTGCCGCTCCGCGTCCCG‑GGCAAAAAAGCCCTGATTCGGGGAACATTTCTGT‑CTTC‑TTTTGGTTTTGAAGTA‑ATTAAAATCGTGATTACCTGCACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑ATCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTGCTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCACCGCCGa                                                                                             <  2:26887/227‑1 (MQ=255)
                                                                                                                                                  ttcttcTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTTCGCGGCGTGGCTTGCCAccgccgc                                                                                             >  1:106327/1‑238 (MQ=255)
                                                                                                                                                         ggATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGGTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGGTCCGTGCCTGGGCTGGTGGCCTTTTTTTACTTCTTCCCCCGTTTTGCCCTGTTTTTCGCGGCGGGGGTTTCAACCCCCCAA‑ATaaaa                                                                                     >  2:103364/1‑238 (MQ=255)
                                                                                                                                                           gttttctGGCGGTTGCCGCGCCACCGTCCG‑GTCAAAAAAGCCCTGGTTCGCGGAACTTTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTCCACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCACCGCCGAATATAAAga                                                                                    <  2:162571/236‑1 (MQ=255)
                                                                                                                                                                       ttGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCgc‑a                                                                                                                                                                                      >  2:248962/1‑129 (MQ=255)
                                                                                                                                                                       ttGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCgc‑a                                                                                                                                                                                      <  1:248962/129‑1 (MQ=255)
                                                                                                                                                                        tGCCGCTCCCCCTTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACCTTTCTGG‑CTGC‑TATTGGTTTTGAAGGG‑ATTAAAATCGTGATGCCCTACCCCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCACTGCCGAATATAAAGACGACCCGCGAATg                                                                       <  2:34058/239‑1 (MQ=255)
                                                                                                                                                                          ccGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑CTTAAAATCGGGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCCTTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGGGTGGTTTGCCACCCCCCaactaaaaaaccacccccgcagccc                                                                     >  2:398336/1‑216 (MQ=255)
                                                                                                                                                                              gcCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGCCCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTACGCGGCGTGGATTGCCACCGCCGAATATAAAGACGACCCGCGAATGCCgggg                                                                 <  1:116263/239‑1 (MQ=255)
                                                                                                                                                                                    ttCCG‑CGAAAAAAAGCCCTTATTCGGGGAACATTTTTGG‑CTTA‑TATTGTTTTTGAAGTG‑ATTAAAATCGTTATGCCCTACACCCTGCCATCGTTGATGAAATCCCCTTTTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTCCTTCTTCGCCCGTTCGACGCTGTTTTGCGCGGCGTGGATTGCCACCGCCGAATATAAAGACGACCCGCGAATGCCGGGGAAAACg                                                           <  2:436125/238‑1 (MQ=255)
                                                                                                                                                                                      ccccggcAAAAAAGCCCTTATTCCGGGAACCTTTCTGG‑CTGT‑TTTTGGTTTTGAAGGG‑ATTAAACTCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCACCGCCGAATATAAAGACGACCCGCGAATGCCGGGGAAAACGc                                                          <  2:732248/234‑1 (MQ=255)
                                                                                                                                                                                      ccG‑GGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCACCGCCGAATATAAAGACGACCCGCGAATGCCGGGGAAAACGc                                                          <  1:377768/238‑1 (MQ=255)
                                                                                                                                                                                         gggcAAAAAACCCCTGATTCGCGGAACATTTTTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTCCTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCACCGCCGAATATAAAGACGACCCGCGAATGCCGGGGAAAACGCAGc                                                       <  2:71952/237‑1 (MQ=255)
                                                                                                                                                                                          cgcAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTTCGCGGCGTGGATTGCCACCGCCGAATATAAAGACGACACGCGATTGCCGGGGAAAACCCAg                                                        >  1:30595/1‑237 (MQ=255)
                                                                                                                                                                                                        gATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACCCCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCACCGCCGAATATAAAGACGACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCgg                                        <  1:398336/239‑1 (MQ=255)
                                                                                                                                                                                                             gcgGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCGTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCACCGCCGAATATAAAGACGACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATgcg                                   <  1:226828/239‑1 (MQ=255)
                                                                                                                                                                                                              cgGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCGGTTTTGCGCGGCGTGGATTGCCACCGCCGAATATAAAGACGACCCGCGAATGCCGGGGAAAACGCAGCCCTAAAAAAGACCGGATgcgg                                  >  2:662668/1‑239 (MQ=255)
                                                                                                                                                                                                                  aCATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCACCGCCGAATATAAAGACGACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTa                              <  1:16037/239‑1 (MQ=255)
                                                                                                                                                                                                                           g‑ctgc‑tATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCACCGCCGAATATCAAGACGACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAAAAGGCCGGGAGCGGGGTAAAGGCCTTa                     >  2:469654/1‑239 (MQ=255)
                                                                                                                                                                                                                           g‑ctgc‑tATTGGTTTTGAAGGG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGCCGCTGTTTTGCGCGACGTGGATTGCCACCGCCGAATATAAAGCCGACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGACGGGATCCGGGGTAAACGCCtt                      >  1:569090/1‑238 (MQ=255)
                                                                                                                                                                                                                               tgtttttGTTTTTGAAGTT‑GTTAAAAGCGTGATGCCCTACCCCCTGCCATCGTTTATGAAATCCCCCTCTGGCGC‑AGCTTTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCACCGCCGAATATAAAGACGACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATc                   <  2:1037351/234‑1 (MQ=255)
                                                                                                                                                                                                                                           tGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCACCGCCGAATATAAAGACGACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGAtt       >  1:749759/1‑239 (MQ=255)
                                                                                                                                                                                                                                            gAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCACAGCCGAAGATAAAGCCGACCCGCGAATGCCGGGGAAAACCCAGCCTTAAAATAGGCCGGATGCGGCGAAAAAGCCTTATCAGGCATACAAttt      >  1:1029524/1‑239 (MQ=255)
                                                                                                                                                                                                                                                tG‑AATAAAATTTTGATTACCTCCACCCTGCCATCGTTGATGACATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGTTGATGGCATTTTTCTCCTTTTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCACCGCCGAATATAAAGACGACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGAATACGATTTTAtt  <  1:96795/239‑1 (MQ=255)
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                
TGATTGTGACGCTTTCGATCACCTCGGTTGCCGGTTCGGCGCAGCAAATGATTATTAGCGCCCTGCACCTGAACAGCATTGAGTGGCTGAAACCGACGTGGCGATTGATTGGCCTGGCGATTTCCATCTTCGCCAACTATCTGCTTTTCTTCTGGATCTTCTGGCGGTTGCCGCGCCACCGTCCG‑CGCAAAAAAGCCCTGATTCGCGGAACATTTCTGG‑CTGC‑TATTGGTTTTGAAGTG‑ATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCCCCCTCTGGCGC‑AGCATTTGGTTCCGTGCTGGGGCTGATGGCATTTTTCTACTTCTTCGCCCGTTTGACGCTGTTTTGCGCGGCGTGGATTGCCACCGCCGAATATAAAGACGACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATT  >  NC_000913/3673947‑3674422

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A