Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F9 I0 R1	260	102.5	2178490	93.2%	2030352	226.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	3,777,790	A→G	13.4%	G131G (GGA→GGG)	lldP →	L‑lactate permease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,777,790	0	A	G	13.4%	297.7 / 4.2	127	G131G (GGA→GGG)	lldP	L‑lactate permease
Reads supporting (aligned to +/- strand): ref base A (69/35); new base G (6/15); total (76/51)
Fisher's exact test for biased strand distribution p-value = 2.64e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 127 total aligned reads displayed.

GGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGG  >  NC_000913/3777556‑3778024

gtcttttcttttCTATAAAATGCCTGTTGTTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCg                                                                                                                                                                                                                                         <  2:494247/237‑1 (MQ=255)

ggCTTTTGTGTTCTAAAAAATGCCTGTCGCTAACGCGCTTGCCGCGGTGGTTTATGGTTTCTTCTACGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCg                                                                                                                                                                                                                                         <  1:134130/239‑1 (MQ=255)

 gCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGGTTCGGCCCGTTCCTTGAAGGGGCCGc                                                                                                                                                                                                                                        >  1:720828/1‑239 (MQ=255)

 gCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGCCGGTTTCTGTTTCGGCGCGTTCCTTGAAGAAGCCGc                                                                                                                                                                                                                                        >  1:777510/1‑239 (MQ=255)

     tGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGTCGCGTTCCTTGAAGGAGCCGCAg                                                                                                                                                                                                                                      >  1:765499/1‑237 (MQ=255)

       tttttttttaAAATGCCGGTCGTTTACGCGCTGGCCTGGGTGGTTTTTGGTTTCTTCTACGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCtt                                                                                                                                                                                                                                  <  2:1039717/231‑1 (MQ=255)

          tttttttaattGCCGGTCTCTTACGCGCTGGCCTCGGGTGTTTTTGGTTTCTTCTACGGGTTGT‑GGCCCATCGCGTGGAACATTATTGCAGCGGTGTTCGACTATAAGATCT‑CGGTGAAACCCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑gg                                                                                                                                                                                                                              <  2:916034/229‑1 (MQ=255)

                    tGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCCGCGCGTTCCTTGAAGGAGCCTCAGGCTTT‑GGCGCCCCGGtt                                                                                                                                                                                                                    >  1:434088/1‑238 (MQ=255)

                    tGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCACCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGCCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCCCCGTTa                                                                                                                                                                                                                    >  1:856416/1‑239 (MQ=255)

                       cGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTTCAGAGGCCCCAGGCTTT‑GGGGCCCCGGGAGCa                                                                                                                                                                                                                 >  2:885151/1‑239 (MQ=255)

                                 cgcgCTGGCCTGGGTGGTTTTTGGTTTTTTCTCCGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTAccgccg                                                                                                                                                                                                       <  1:309592/239‑1 (MQ=255)

                                 cgcgCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGGCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGGAGGCTTT‑GGGGCCCCGGGAGCAAATAccccc                                                                                                                                                                                                        >  2:556148/1‑238 (MQ=255)

                                 ccgcgtGGCCTGGGTGGTTTTTGGTTT‑TTTTTCGGGTTTTGGGCCCTTCGGGTGGATCATTATTGCAGCGGTGTTCGTTTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTAccgccg                                                                                                                                                                                                       <  2:290783/234‑1 (MQ=255)

                                 cccgcTGGCTTGGGTTGTTTTTGTTTTTTTCTGCGGGTTGG‑GGCCCGTCGGTGGGATCATTTTTGCAGGGGTTTTCGTTTATAAGGTCC‑CGGGGAAAACCGGGCAGTTGGACATCATTCGCTGGTCTATTTTTTCGATAACCCCTGACCAGCGTCTGCAAATGGTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTAccgccg                                                                                                                                                                                                       <  2:328746/237‑1 (MQ=255)

                                        gCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGT‑GGCCCATCGCGTGGCTCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAACTGCGGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAATGAGCCGCAGGCTTT‑GGCGCACCCGTAGCGATTACACCCCCATTGcc                                                                                                                                                                                                >  1:38252/1‑238 (MQ=255)

                                        gCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACACCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTATGTTTCGGCGCGTTCCTTGCAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCCCCGCAttccg                                                                                                                                                                                                >  2:862379/1‑236 (MQ=255)

                                              gtggtTTATGGTTTCTTCTACGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGGGTTCGTCTATAGGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGGGTTCCTTGATGGAGCCGCAGGCTTT‑GGGGCCCCGGTAGAAAATACCCCCCAATTGCggggggg                                                                                                                                                                                          >  2:431235/1‑235 (MQ=255)

                                                       ggTTTCTTCTACGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGttt                                                                                                                                                                                 >  1:236610/1‑239 (MQ=255)

                                                          ttcgtgcaCGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTa                                                                                                                                                                               <  1:582033/231‑1 (MQ=255)

                                                           tcttctACGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGCCATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCCCCGGTAGCAATTTCCCCCCCATTGCTGCGCGGCCTGGGTTTTaa                                                                                                                                                                              >  2:73511/1‑238 (MQ=255)

                                                           tcttctACGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGTTCGGCCTGGGTTTTaa                                                                                                                                                                              >  1:100829/1‑238 (MQ=255)

                                                           tcttctACGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCGGGTCGGCCTGGGTTTTaa                                                                                                                                                                              >  1:374746/1‑238 (MQ=255)

                                                           tcttctACGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAAACCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTTTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGGGCACCGGTAGCAATTCCCGCCGCATGGTCTGTCGGCCTGGGATTTaa                                                                                                                                                                              >  2:643944/1‑238 (MQ=255)

                                                           tcttctACGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCAGGCAGTTTGACATCATTCTCTCGTCTATTCTTTCGATAACCCCTTACCAGCGACTTCAAATGCCGATCCTCCGTTCCTGGTTCGGGGCGTTCCTTGAAGGAGCCGCCGGCTTT‑GTGCCCCCGGTAGCACTTACCGCCGCGTTGCGTGTCGGCCTGGGTTTCaa                                                                                                                                                                              >  2:245573/1‑238 (MQ=255)

                                                                 aCGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGGGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTAccg                                                                                                                                                                                                          >  1:642550/1‑204 (MQ=255)

                                                                   gtgTTGT‑GGCCAAGCGGGTGGTTCATTATTGCAGCGGTTTTCGTCTTAAGGATCT‑CGGGGAAAACCGGGCAGTTTGACACCATTCGCGCGTCTTTTCTTTCGATACCCCCTGTCCAGCGTCGGAAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGGGCGGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTa                                                                                                                                                                     <  2:783216/237‑1 (MQ=255)

                                                                   gggTTGG‑GGCCCATCGCGTGGATCATTTTTGCAGCGGTGTTCGTCTATAAGATCT‑GGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTa                                                                                                                                                                     <  1:674647/239‑1 (MQ=255)

                                                                       tgt‑gGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTAcgc                                                                                                                                                                  >  1:193761/1‑238 (MQ=255)

                                                                        gt‑gGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGGTAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCCGCGCGTTCCTTGAAGGTGCCGCAGGCTTT‑GGCGCACCGGGAGCAATTTCCCCCGCCTTTGTGGCCGGCCGGGGGTGTaacacccgtaaccgc                                                                                                                                                                 >  2:958413/1‑225 (MQ=255)

                                                                         t‑gGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTTGCAATTTCCGCCGCCTTCCTGGTCGGCCTGGGGTTTAAACCGCTGGAcgccgc                                                                                                                                                               >  2:946736/1‑239 (MQ=255)

                                                                         t‑gGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTAcgccg                                                                                                                                                                >  1:639957/1‑238 (MQ=255)

                                                                              ccATGGGGTGGATCATTATTGCAGCGGTTTTCGTCTATAAGATCT‑GGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGGCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCggg                                                                                                                                                           <  1:73511/239‑1 (MQ=255)

                                                                                aTCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCgg                                                                                                                                                            >  1:431502/1‑236 (MQ=255)

                                                                                 tCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCCGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAGGGAGCCGCAGGCTTT‑GGCGCCCCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCCGCACGCCCCCggacgg                                                                                                                                                        >  2:797615/1‑235 (MQ=255)

                                                                                     tggattcttttttGCCGCGGTTTTCTCTTATAAGATCT‑CGGAGAAAACCGGGCCTTTTGCCATCATCCCCTCGTCTATTGTTGTGAACCCCCCAGCCCCGCGTCTGCAAATGTCGTCCGGCGGTTTCTGTTTCGGCTCGTTCCTTGAAGGATCGCCAGCCTTT‑GGCCCACCGGTGCCAATTCCCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGcc                                                                                                                                                    <  2:116265/228‑1 (MQ=255)

                                                                                      gggATCATTGTTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATACCCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGcc                                                                                                                                                    <  1:556148/237‑1 (MQ=255)

                                                                                       ggctCATTTTTGCAGGGGTGTTCGTCTAAACGATCT‑CGGTGAAACCCGGGCAGTTTGACATCATTCGCTCTTCTATTCTTTCGATACCCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTg                                                                                                                                                  <  1:885151/236‑1 (MQ=255)

                                                                                       ggATCATTATTGCCGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCATTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCTTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTg                                                                                                                                                  <  1:160364/239‑1 (MQ=255)

                                                                                        gATTATTTTTGCAGCGGTTTTCGTCTAAAAG‑TCTCCGGTTAAAACCGGGCAGTTTGACATCATTCGCCGGTCTATTCTTTCGATAACCCCTGACCAGGGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGGGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTg                                                                                                                                                  <  1:862379/238‑1 (MQ=255)

                                                                                        gATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACCCCCCCGGGCTGTGCCTGa                                                                                                                                                 >  1:872724/1‑239 (MQ=255)

                                                                                                   cAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCAGGTGGGCCTGGGTTTTAAACCGCTGAACGGCGCCGGGCGGTGCCTTGTTGTTAacaac                                                                                                                                      >  2:361922/1‑237 (MQ=255)

                                                                                                   cAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTCCTGGTCGGCCTGGGTTTTAAACCCCTGTAGGCCCCCGGGGTGGGCCCGATTGTTaaaaac                                                                                                                                      >  2:1069901/1‑235 (MQ=255)

                                                                                                   cAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCAACGGTAGCAATTACTGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCCCCGGGATGTGCCTGCTTGTTaccacc                                                                                                                                      >  1:622429/1‑239 (MQ=255)

                                                                                                     gCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGCGGTGGGCCTGATTGTTAACACcg                                                                                                                                     >  1:1020845/1‑238 (MQ=255)

                                                                                                     gCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTCCTGGTCGGCCGGGGTTTTAAACCGTTGTACACCGCCGGGCCGGGCCTGATttttccacccgc                                                                                                                                    >  2:616592/1‑231 (MQ=255)

                                                                                                        gtgtTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTCCCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGCACGCCACCGGGCTGTGCCCGATTGTTAACACCGCGcc                                                                                                                                 >  2:476284/1‑239 (MQ=255)

                                                                                                        gtgtTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCCGGGTTTTAACCCGCTGTACCCCCCCGGGCTGTGCCTGTTTTTTAAAAccccccc                                                                                                                                 >  2:884585/1‑234 (MQ=255)

                                                                                                        gtgtTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGAT‑ACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTGGCAATTACCGCCGCATTGCTGGTCGGCCGGGGGTTTAAACCGCTGTACCCCGCCGGGCGGGGCCGGGTTTTTAAAACCCCGccg                                                                                                                                >  2:1007687/1‑238 (MQ=255)

                                                                                                           ttCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCCATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACCCCGCCGGGCCGGCCCTGGTTGTTTAAACCGCGCCatg                                                                                                                              >  2:334705/1‑237 (MQ=255)

                                                                                                           ttCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTTGGGTTTAAACCGCTGTACCCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGt                                                                                                                              >  1:589239/1‑239 (MQ=255)

                                                                                                           ttCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGGTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGAGCCAGt                                                                                                                              >  1:1022039/1‑239 (MQ=255)

                                                                                                                cTATAAGATCT‑CGGTGGAAAACGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCCGCGCCTGCAAATGCTGGTCGTCGGTTTCTGTTTCGGCGCGTTCCCTGAAGGGGCCGCCGGCTTT‑TGGGCACCGGGAGCAATTACACGCGCCCTGCTGGCCGGCCTGGGGTTTAAACCGCACTACGCCCCCGGGGGTGGCCTGATTGTTACCACCCCGcccgggggcg                                                                                                                         >  2:693419/1‑231 (MQ=255)

                                                                                                                  taatagttctggtggAAACCCGGGCAGTTGGACATCTTTCGCGGGTTTTTTCTTTGGTTACCCCCTGCCCAGGGTCTGGAAATGCTGATCGTCGGTTTCTGGTTCGGCGCGTTCCTTGAAGGGGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCAtt                                                                                                                        <  2:408595/225‑1 (MQ=255)

                                                                                                                        gacagggTGAAACCCGGGCAGTTTGACATCATTCGCTCGTTTATTCTTTCGATAACCCCTGCCCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGt                                                                                                                    <  1:340617/232‑1 (MQ=255)

                                                                                                                         ct‑cGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCCCCGGTAGCACTTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGATGTACGCCGCCGGGCTGTGCTTGATTGTTAACACCGCTCCCGTGGCATTTGGTGctc                                                                                                                >  1:328899/1‑237 (MQ=255)

                                                                                                                         ct‑cGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGa                                                                                                                >  1:326629/1‑239 (MQ=255)

                                                                                                                            cGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCCTTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACCCCCCGCCCGTGGAATTTGGGGCGCTg                                                                                                              >  2:579103/1‑239 (MQ=255)

                                                                                                                             ggTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTg                                                                                                                                                  <  1:294444/202‑1 (MQ=255)

                                                                                                                             ggTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTg                                                                                                                                                  >  2:294444/1‑202 (MQ=255)

                                                                                                                              gTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTTTGCCTGATTGTTAaca                                                                                                                                        >  1:404323/1‑211 (MQ=255)

                                                                                                                                        ggCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGGGGAATTTGGggggatggggatctgtcct                                                                                                  >  2:340617/1‑232 (MQ=255)

                                                                                                                                               tGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGACGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGTTCGGCCCGGGGTTTAAACCGCTGTACGCCGCCGGGCTGGGCCTGGTTGTTAAACCCGCGCCCGTGGCATTTGGCGCGAGGGGCCTTTCAA‑CCTAGTTg                                                                                           >  2:655879/1‑238 (MQ=255)

                                                                                                                                               gggcatcatTCGCTGGTCTATTCTTGCGAGACCCCCTTGCCAGCGGCTGGAAAGTCTGGTTGTCGGTTTCTGTTTCGGCGGGTTCCTTGAAGGGGCCGCAGGCTTT‑GGCCCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTg                                                                                           <  1:509645/236‑1 (MQ=255)

                                                                                                                                                    ttctttccTCGTTTTTTCTTTCGATAACCCCTGACCAGCGTTGGAAAAGGCGGATCGGCGGTTTCTGTTTCGGCGTGTTCCTGGAAGGGGCCGCAGGCTTT‑GGCGCCCCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGa                                                                                      <  2:193761/232‑1 (MQ=255)

                                                                                                                                                    tcatTCGCTCTTTTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGTTGACCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGa                                                                                      <  1:637147/239‑1 (MQ=255)

                                                                                                                                                    tcatTCGCTCTGCTATTCTTTGCATAACCCCTGACCAGCGTTTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCCCCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGa                                                                                      <  1:1069901/239‑1 (MQ=255)

                                                                                                                                                               tCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCGGCCGGGCTGTGCCTGGTTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCGTTCCAATCCTGGTTCCCGGacagggaacagg                                                                           >  2:806558/1‑239 (MQ=255)

                                                                                                                                                               tCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGGGCCTGGTTGGTAAAACCGCGCCAGGGGCATTTGGTGCGCTGGGCCTTCCAATCCCGGTTGCCGGaaagggaacagg                                                                           >  2:20070/1‑239 (MQ=255)

                                                                                                                                                                     tctgtcgatcccccTGACCAGCGTCTGCAAAGGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGa                                                                     <  1:1007687/229‑1 (MQ=255)

                                                                                                                                                                        tCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTTGGCCTGATTTTTAACACCGCGCCAGTGGCATTTGGGGCGAGGGGCGTTCCAATCCTGGTTGCCGGacaggtacaggggatcgcacg                                                                  >  1:1046071/1‑225 (MQ=255)

                                                                                                                                                                        tCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTACCGGCa                                                                   >  1:487387/1‑238 (MQ=255)

                                                                                                                                                                               ccccTTACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTgag                                                           >  1:307436/1‑239 (MQ=255)

                                                                                                                                                                                ccctcgcctgtgtgtGCAAATGTTGATCTTTGTTTTGTGTTGGGGCG‑GTTTCCTGGAGGGGGCGCAGGGTTTGGGCGCACCGTTTGAAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTgaga                                                          <  2:73596/225‑1 (MQ=255)

                                                                                                                                                                                 ccggACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTGGAAGCAGCCGCAGGCTTT‑GGCGCACGGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGAt                                                         <  1:277335/236‑1 (MQ=255)

                                                                                                                                                                                          cGTCTGCAAATGCTGCTCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTCTCGACAGCTTTGAGACTGGTCAGAt                                                >  1:546143/1‑239 (MQ=255)

                                                                                                                                                                                          cGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCATGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTACCAGGTATCGACAGCTTTGAGATTGGTCAGAt                                                >  1:417653/1‑239 (MQ=255)

                                                                                                                                                                                          cGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATTCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTTAGATTGGTCAGAt                                                >  1:863569/1‑239 (MQ=255)

                                                                                                                                                                                          cGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGCTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCTGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGCAACAGGTATCGCCAGCTTTGAGATTGGTCCGAt                                                >  1:352923/1‑239 (MQ=255)

                                                                                                                                                                                                        gATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGcc                                                                                                                                                    >  1:288305/1‑125 (MQ=255)

                                                                                                                                                                                                        gATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGcc                                                                                                                                                    <  2:288305/125‑1 (MQ=255)

                                                                                                                                                                                                        gATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTACCACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGCCAGCTTTGGGATTGGTCAGATGGTGGGGCGGCa                                    >  1:1061625/1‑237 (MQ=255)

                                                                                                                                                                                                        gATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCCTTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACCGGGACCGAAAGCTTTCAGATTGGCCCAATGGGGGGGCGGCCGc                                  >  2:209571/1‑239 (MQ=255)

                                                                                                                                                                                                        gATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGGATCGACAGCTTTGGGATTGGTCAGATGGGGGGGGGGCa                                    >  1:687456/1‑237 (MQ=255)

                                                                                                                                                                                                           cgtcgGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGGGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCacgta                                >  1:161398/1‑234 (MQ=255)

                                                                                                                                                                                                                gTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTg                                                                                                                                                  >  1:1050335/1‑119 (MQ=255)

                                                                                                                                                                                                                gTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTg                                                                                                                                                  <  2:1050335/119‑1 (MQ=255)

                                                                                                                                                                                                                  tttgtttccgggtggTTCCTTGAAGGCGCCCGAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTAt                        <  1:946736/225‑1 (MQ=255)

                                                                                                                                                                                                                           ggCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTa                >  1:921399/1‑238 (MQ=255)

                                                                                                                                                                                                                               gttcccTTGAAGGGGCGCCTGTTTTG‑GGCACTCCGGTATCAATGCCCCGCGCTTTGCTGGTCGGCCTGGTGTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACGCCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTg           <  2:856416/235‑1 (MQ=255)

                                                                                                                                                                                                                               cgTTCCTTGAAGGGGCCGCAGGCTTT‑GGCGCACCGGTAGCATTTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTg           <  1:97024/239‑1 (MQ=255)

                                                                                                                                                                                                                                tttCCTTGAAGGGGCCGCGGGCTTT‑GGCGCCCCGGTGACAATTCCCGCCGCATGGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTg           <  2:757369/237‑1 (MQ=255)

                                                                                                                                                                                                                                ggcccTTGGGGGAGCCGCAGGTTTT‑GGGCCACCAGGAGCAATTCCCGCCGCGTTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGGGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACTGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTg           <  1:984596/235‑1 (MQ=255)

                                                                                                                                                                                                                                gTTCCTGAAAGGAGCCGCAGGCTTT‑GGCGCCACGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTTGGTTTTAAACCGCTGTACGCCGGCGGGCTGGGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTg           <  1:245573/238‑1 (MQ=255)

                                                                                                                                                                                                                                gTTCCGTGAAGGGGCCGCGGGTTTT‑GGCGCCCCGGTAGCAATTACCGCCGCATTGCTGGGCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAAATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTg           <  1:238715/238‑1 (MQ=255)

                                                                                                                                                                                                                                cttCCTTGAAGGGGCCGCAGGCTTG‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTg           <  1:6959/237‑1 (MQ=255)

                                                                                                                                                                                                                                 ttCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGGATCGACAGCTTTGGGATTGGTCAGATGGGGGGGCGGGAGCTACCGTTTATGCCAATTATCGt            >  2:782640/1‑236 (MQ=255)

                                                                                                                                                                                                                                    cTTGAAGGAGCCGGGGGCTTT‑GGCGCACGGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGtt      <  1:884585/239‑1 (MQ=255)

                                                                                                                                                                                                                                       gAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGAt                                                >  1:262291/1‑194 (MQ=255)

                                                                                                                                                                                                                                       gAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGGATCGACAGGTTTGAGATTTGTCAGATGGGGGGGCGGGAGCTACCGTTTATGACCATTATCGGGCCGTTCTg   >  2:543885/1‑239 (MQ=255)

                                                                                                                                                                                                                                         aGGAGCCGGAGGGTTT‑GGCCCACCGGAGCCAATTACCGCCGCATTTGTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTgg  <  1:361922/238‑1 (MQ=255)

GGCTTTGCTGTTCTATAAAATGCCGGTCGCTAACGCGCTGGCCTCGGTGGTTTATGGTTTCTTCTACGGGTTGT‑GGCCCATCGCGTGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCT‑CGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTT‑GGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGG  >  NC_000913/3777556‑3778024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A