Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F9 I0 R1 260 102.5 2178490 93.2% 2030352 226.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,901,831 T→A 12.2% Y130F (TAT→TTT)  bglH ← carbohydrate‑specific outer membrane porin, cryptic

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,901,8310TA12.2% 387.6 / 3.7 152Y130F (TAT→TTT) bglHcarbohydrate‑specific outer membrane porin, cryptic
Reads supporting (aligned to +/- strand):  ref base T (40/85);  new base A (19/3);  total (60/92)
Fisher's exact test for biased strand distribution p-value = 2.02e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 152 total aligned reads displayed.

TGCATATAGTTCTCGCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTTCTTCTCTTCATCTTTA  >  NC_000913/3901597‑3902067
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                             
  cATATAGTTCTCGCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTACCCCAACCAAAACGGGAATAgacat                                                                                                                                                                                                                                         >  1:86323/1‑235 (MQ=255)
   agttaGTACGCGACACCGGCGTTATCGCAAAACCAGCCGGTAGAGTTCTGCTGACCAACGTTACCAGTCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGTTCCCCCAACCAGAACGGTAATAGCCGtt                                                                                                                                                                                                                                        <  1:833017/236‑1 (MQ=255)
         ttCTCGCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAAACGCCCATGATTTTGGTGAACACTGAGAGGCGGCCCCCCAAACAAAACGGGAAAAACCGGTGGaaaa                                                                                                                                                                                                                                  >  2:897366/1‑237 (MQ=255)
            tcGCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTaaa                                                                                                                                                                                                                               >  1:101097/1‑239 (MQ=255)
            tcGCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGGCCCCCACACACAACGGAAAAAGAGATTGTaaaaaaa                                                                                                                                                                                                                               >  2:565486/1‑234 (MQ=255)
            tcGCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGCTCCCCAACCAGAACGGTAATAGCCGCGGTAACTaaa                                                                                                                                                                                                                               >  1:35200/1‑239 (MQ=255)
            tcGCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAAGGAACCAATCGCCCATGATTTAGGGGAACCAAGAGAGGCGGTCCCCCAAACAGAACGGTAAAAgtcacttttaaaca                                                                                                                                                                                                                                >  2:1042848/1‑225 (MQ=255)
            ccGCCACCGGGGTTACCGCCAACCCAGCCGGTAGAGTACTGCTGACCAACGTTCCCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTaaa                                                                                                                                                                                                                               <  1:85435/238‑1 (MQ=255)
              gCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAAAGAACCCATGGCCACTGCTTTAGGGGAACCATGAGAGACGGGGCCCCCACCAGAACCGTAAAACCCGGTTCAACTAAAGc                                                                                                                                                                                                                             >  1:108476/1‑239 (MQ=255)
                                          ggagagTTCTGTCGACCAACGTTACCATCCATCCTCACAACGGCACAAACCCGTTTGCCGGTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGaa                                                                                                                                                                                                 <  2:998281/237‑1 (MQ=255)
                                           tAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCCGAACGGTAAAAACCCGTGTAACAAAAACCAAATTCATCTTTCACAAATTTAATaaaa                                                                                                                                                                                                >  2:179523/1‑239 (MQ=255)
                                                  ctgctgACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGCCACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCCCCCATGATTTAGGTTAACCATGAAAGGCGGTGCCCCAACCAGAACCGTAATAACCCTTTTAACTCAAGCCAAATTCATCTTTCACAAATTAAATGaaaaatttac                                                                                                                                                                                         >  2:61747/1‑232 (MQ=255)
                                                   tgctgACCAACGTTACCATCCATCATCAAAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCag                                                                                                                                                                                        <  1:617649/239‑1 (MQ=255)
                                                     ctgACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGTGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGGGAACCATGAGAGGCGGACCCCCAACCCAAAAGGAAACAACCGGTTTACATAAAGCCAATTTCACCTCTCAAAAATTTaacaaaaacatcaaaag                                                                                                                                                                                      >  2:1017133/1‑223 (MQ=255)
                                                     ctgACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAAACTTTCagag                                                                                                                                                                                      >  1:144868/1‑239 (MQ=255)
                                                        aCCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGCGAGGCGGTCCCCCAACCCGAACGGTAAAAGCCGTTTTAAATCAAGCCAAATTCATCTTTCACAAAATTACTGACATCTTTctaagcaa                                                                                                                                                                                   >  1:183135/1‑232 (MQ=255)
                                                        aCCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCCGAACGGTAATACCCGTTGTAACTAAAGCCCATTTCATCTTTTACAAATTTACCGAAAACTTTCATAGTCa                                                                                                                                                                                   >  1:94801/1‑239 (MQ=255)
                                                          cAACTTTTCCCTCCATCATCCCAACTGCATCCACCCGTTTGCCGTTTTCGTTTTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATg                                                                                                                                                                                 <  2:957908/239‑1 (MQ=255)
                                                          cAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCCGGGAACCAATCGCCAATGATTTAGGTGAACCATGAAAGGCGGTCCCCCCACCCGAACGGGAAAAGACGCTTGCACCAAAACCAATTTCATTCTTCACAAAATTACTTAAAACTTTTagaggaaag                                                                                                                                                                                 >  2:776818/1‑234 (MQ=255)
                                                            atgTTTCCATCCATCATCACAACGGCATCACCCCGTTTCCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCAGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGga                                                                                                                                                                               <  2:807880/237‑1 (MQ=255)
                                                             cGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGAAAAAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCCAAGGCATGgaa                                                                                                                                                                              >  1:425865/1‑239 (MQ=255)
                                                              tgtaccgaccaacATCCAAAAGGCATCAACCCGTATGCCGTTGTCGTTGTAGACGCGTTGTTTTA‑AC‑GGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCACAAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGgaag                                                                                                                                                                             <  2:154885/231‑1 (MQ=255)
                                                               ttACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGTTGAACCATGAGAGGCGGTCCCCCAACACGAACCGGAATAGCCGTTGTAAATAAAGCCAATTTCACCTTTTACAAAATTACTGAAATCttttaaaagaaaggaaaa                                                                                                                                                                            >  2:212604/1‑224 (MQ=255)
                                                               ttACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGGAAATACCGTTGTAAATCAAGCCAATTTCCACTTTCACAAAATTACTGaaaacattaacaaaacaggaaaa                                                                                                                                                                            >  2:52565/1‑219 (MQ=255)
                                                                tcccatccacactccaatcGGCACCAACCCGTTTCGCCTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATCCCGTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCGTTCACAAATTTACTGAAATCTTGCAGAGTCATGgaagaa                                                                                                                                                                           <  2:694761/221‑1 (MQ=255)
                                                                    atccatcATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCCACCCGAACGGGAATAGCCGTTTTCACTAAAGCCAATTTCCTCTTTACCAAATTTACTGAAAACttttcgagcactggaaaaaaaaa                                                                                                                                                                       >  2:658069/1‑219 (MQ=255)
                                                                      ccatcATCAAAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATc                                                                                                                                                                     <  1:897366/239‑1 (MQ=255)
                                                                       catcatCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAAAAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACCAATTTACTGAAATCTTTCACAGCCAGGGAGGGATAAATcc                                                                                                                                                                    >  1:797016/1‑238 (MQ=255)
                                                                                   ggCATCAACCCGTTTGCCTGTTTCGTTGTAGACACGTTGCTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCAc                                                                                                                                                       <  1:883670/239‑1 (MQ=255)
                                                                                       tCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCCAGCCT‑GCCTCACTgct                                                                                                                                                   >  1:874460/1‑237 (MQ=255)
                                                                                       tCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGGTCCCCAACCAGAACAGGAAAAACCGGTGTAAACAAAACCAAATTAACTTTTCCAAAATTTACTTAAAACTTTTAAAGACATGGAGAAAACAAACAAGCCC‑GTCTCACTgga                                                                                                                                                   >  2:292821/1‑238 (MQ=255)
                                                                                               tttGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCCCAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAACCT‑GTCTCACTGGCCttttt                                                                                                                                             >  1:667795/1‑237 (MQ=255)
                                                                                               tttGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGaa                                                                                                                                                                                                 <  2:249971/186‑1 (MQ=255)
                                                                                               cttGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGGCCCCCAACCAGAACGGTAAAAGCCGTTGTAACGAAAGCCAATTTCATCTTTAACCAAATTACTGAACACTTTCAGAAGCAAGGGAGAAAAAATACAGACT‑TTTCTACTGGCATTTTtct                                                                                                                                           >  2:34776/2‑239 (MQ=255)
                                                                                                   ccGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGGCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTttcttc                                                                                                                                       >  1:915626/1‑239 (MQ=255)
                                                                                                       tttcttgttggaccctttgttTTA‑AC‑TCGAAACCAAACCAGCGGGGTTATGCGGTCCAAAAGCGGCCCAAAGATCCAAGCGCCAGTGATTGAGGTGACCAGTGGGAGGCGGTCCCCAAACCAGAACGGTAATAGCCGTGGTAACTAAAGCCAATTTCAGTTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAAAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCAttt                                                                                                                                   <  2:946418/223‑1 (MQ=255)
                                                                                                         tCGTTGTAGACACGTTGTTTTA‑AC‑GGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCAttttt                                                                                                                                 <  1:229347/239‑1 (MQ=255)
                                                                                                            ttGTAGCCACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGAc                                                                                                                              <  1:999777/239‑1 (MQ=255)
                                                                                                            ttGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGAc                                                                                                                              <  1:528054/239‑1 (MQ=255)
                                                                                                            ttGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGAc                                                                                                                              <  2:101097/239‑1 (MQ=255)
                                                                                                            ttGTAGACACCTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGTGTTTTTCGTTACCAAGGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGAc                                                                                                                              <  1:776818/239‑1 (MQ=255)
                                                                                                            tggTAGACCCGTTGTTTTA‑AC‑TGAAAATCAACCCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGAc                                                                                                                              <  1:342680/237‑1 (MQ=255)
                                                                                                            gttgaggcacTTTTTTTTA‑AC‑TGGAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTTAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGAc                                                                                                                              <  1:292821/232‑1 (MQ=255)
                                                                                                             tttgatgcactttttttA‑ACATGAAAAACAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCAGGATTTAGGGGAACCAGGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGAc                                                                                                                              <  2:244655/226‑1 (MQ=255)
                                                                                                             tggaGACACGTTGTTTTA‑AC‑TGAAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCAAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGAcc                                                                                                                             <  1:962066/236‑1 (MQ=255)
                                                                                                             tGTAGACCCGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGAc                                                                                                                              <  1:658069/238‑1 (MQ=255)
                                                                                                             tGTAGACCCGTTGTTTTA‑AC‑TCCAAACAAACCCGGCCGGATTATTCGTTACAAAAGCGGCCCAGAGAACCAATCGGCCATGTTTTAGGTGAACCATGAGAGGCGTTCCCCAAACCAGAACGGTAAGAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGAc                                                                                                                              <  2:693020/238‑1 (MQ=255)
                                                                                                                 atcacGTTTTTTTACAC‑TG‑AAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAAAGAACCAATCCCCCATGCATTAGGTGAACCATGAAAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTa                                                                                                                         <  1:511713/237‑1 (MQ=255)
                                                                                                                   cccgtgtttgtA‑AC‑GGCAATACAAACCAGCCGGAGTATCCGTTACCAAAGCGGCCCAGAGACCCAATCGCCCATGATTTAGGGGAACCATGAGAGGCGGTCCCCAACCCAGAACGGTAATAGCCGTTGTAACTAAAGCCAAGTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTa                                                                                                                         <  2:571283/227‑1 (MQ=255)
                                                                                                                      gttgttTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGCCATGGAAGAATAAATCGAGCCTGGTCT‑ACTGGCATTTTTCTCTTCTTTTTTTCCCAGTACAGCa                                                                                                                    >  1:244655/1‑239 (MQ=255)
                                                                                                                         gttTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCCTTTTTCTCTTCAttttctgtttcttatacacat                                                                                                                 >  1:644105/1‑222 (MQ=255)
                                                                                                                              a‑aC‑GGCAAATCAACCCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGttt                                                                                                            <  1:168906/239‑1 (MQ=255)
                                                                                                                                 c‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTg                                                                                                          <  1:565486/239‑1 (MQ=255)
                                                                                                                                    gCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCCCAAATTTACTGAAATCTTTAACAGTCAAGGAAGAATAAATCGAACCT‑CTCTCACTGGCCTTTTTCTCTTCCTTTTTGACCAGTAAAGCATGAGGattttc                                                                                                         >  1:507819/1‑236 (MQ=255)
                                                                                                                                    gCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTg                                                                                                          >  1:265900/1‑237 (MQ=255)
                                                                                                                                      aaaaCAAACCAGCCGGGTTTTTCCTTTCCAAAGGGCCCCAAGAAACCAACCGCCAATGATTTAGGTGAACCATGGGAGGGGGTCCCCCAACCAAAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCgg                                                                                                       <  2:14272/238‑1 (MQ=255)
                                                                                                                                      aaaTCAAACCGGGCGGGTTATTCTTTACCAAAGGGGCCAATGGAACCAACCGCCAAGGATTTAGTTGAACCGTGGGAGGCGGTCCCCCAACCAGAGCGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTGCTGAAATCTGTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCgg                                                                                                       <  2:89882/238‑1 (MQ=255)
                                                                                                                                      aaaTCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAAACAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGGAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCCTTTTTTACCCGTACAGCa                                                                                                                    >  1:610420/1‑225 (MQ=255)
                                                                                                                                      aaaTCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATGTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCgg                                                                                                       <  1:715403/238‑1 (MQ=255)
                                                                                                                                                      aGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGAcc                                                                                                                             <  1:384398/200‑1 (MQ=255)
                                                                                                                                                      aGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCCCCCATGATTTAGGTGACCCATGAGAGGCGGTCCCCCAACCAGACCGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGaa                                                                                       <  1:44146/238‑1 (MQ=255)
                                                                                                                                                             gTTACCAAAGCGGCCCAGAGACCCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTgg                                                                               <  1:34776/239‑1 (MQ=255)
                                                                                                                                                                aCCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGGACGGTAAAAGCCGTTGTAACTAAAGCCCATTTCATCTTTCCTAAATTTACTGAAAATTTTCAGATGCATGGAAGAATAAATCAAGCCT‑GGTCCCCTGGCATTTTTCTCTTCATTTTTTACCAGTACAGCCCACGGTTTTTCGGCACTACTGGTCGGGCACGGGTTgtcg                                                                             >  1:253927/1‑238 (MQ=255)
                                                                                                                                                                aCCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGGAATAGCCGTTGTAACTAAAACCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGCACCT‑GTCTCCCTGGCATTTTTCTCTTCATTTTTGAACAGTAAAGCATAGAGTTTTGCGGCCCTTCTGGTCCGGAACGGATTggggg                                                                            >  2:273767/1‑239 (MQ=255)
                                                                                                                                                                 ccAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTggcggc                                                                           <  1:848042/239‑1 (MQ=255)
                                                                                                                                                                 ccAAAGCGGCCCAAAGAACCAATCGCCCATGATTAAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTggcggc                                                                           <  1:396003/239‑1 (MQ=255)
                                                                                                                                                                  cAAGGCGGGCAAAAGACCCAATCGCCCAGTTTTGAGGGGAACAAGGAGGGGCGCGTCCCCAACGCGAACGGTAATAGCCGTTTTAACTAAAGCCAATTGCACCTGTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCa                                                                          <  2:739936/239‑1 (MQ=255)
                                                                                                                                                                  cAAAGGGGCCCAGAGAACCAATCGCCCATGATTTAGGTGACCCATGAGAGGCGTTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCa                                                                          <  2:978672/239‑1 (MQ=255)
                                                                                                                                                                  cAAAGGGGCCAAGAGAACCAATCGCCCATGATTTAGGTTAACCATGAAAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCa                                                                          <  1:622082/239‑1 (MQ=255)
                                                                                                                                                                  cAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCACAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCa                                                                          <  1:513775/239‑1 (MQ=255)
                                                                                                                                                                    aaGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCCGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGAACAGCATCAAGTTTTTCGGCCCTACTGGCCGGGAACGGATTggcgggca                                                                         >  2:872721/1‑235 (MQ=255)
                                                                                                                                                                                gacccAACCCCCCTTTATTTAGGGGTACCATGGGAGCCGGTCCCCCAACCAAACCGGTAATAGCCCTTGGAACTAAAGCCAATTTCATTTTTCACAAATCTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCAATGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCAtt                                                            <  2:108476/236‑1 (MQ=255)
                                                                                                                                                                                acaCCAAACGCCCAGTATTTAGGTGAACCATGAGGGGCGGTCCCCCACCCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTGTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCAtt                                                            <  2:35200/237‑1 (MQ=255)
                                                                                                                                                                                 aaCCAATCGCCCATGATTTAGGTTAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCa                                                                          <  1:843822/224‑1 (MQ=255)
                                                                                                                                                                                      aTCCCCCATGTTTTGGGTGAACCATGAGGGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACt                                                      <  2:507819/239‑1 (MQ=255)
                                                                                                                                                                                         gCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTTACCAGTACAGCATAAGGTTTTGCGGCACTACTGGTTGGGAACGGGTTGGCGGGAAACCCCTGATCATTTGTACTTAc                                                   >  2:1040832/1‑239 (MQ=255)
                                                                                                                                                                                          cccATTATTTAGGTGAACCATGGAAGGGCGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACg                                                  <  1:454654/239‑1 (MQ=255)
                                                                                                                                                                                           ccATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAACCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGCAATCTTTCAGAGTCATGGAAGAATAAATCGAGACT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCCTCAGGTTTTTCGGCACTACTGGTTGGGAAAGGCTTGGGGGCATAACCTTGTTcctgtctcttataaa                                                 >  2:843822/1‑225 (MQ=255)
                                                                                                                                                                                            cATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCt                                                <  1:311114/239‑1 (MQ=255)
                                                                                                                                                                                             tttaTTTAGGTAAACCGTGAGGGGCGGTCCCCCACCCAAAATGGTAAGAGCCGTTGTAATTAAAGCCAATTTCATCGCTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTa                                               <  2:860152/236‑1 (MQ=255)
                                                                                                                                                                                                     ggTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCTGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGGTCATTCGTACTTACGCTACGGTTCa                                        >  1:138893/1‑238 (MQ=255)
                                                                                                                                                                                                         aaCCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGAc                                                                                                                              >  1:918688/1‑148 (MQ=255)
                                                                                                                                                                                                         aaCCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGAc                                                                                                                              <  2:918688/148‑1 (MQ=255)
                                                                                                                                                                                                         aaCCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCAAACCCTTGTTCATTCGTACTTACGCCACGATTCACCGt                                    >  1:736504/1‑238 (MQ=255)
                                                                                                                                                                                                          aCCATGGGGGGCGTTCCCCCAACCAAAACGGTAATAGGCGTTGTAACTAAAGCCAATTTCATCTGTCACAAATTTCATGAAATCTTTCAGATGCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCAGCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCg                                  <  2:612276/239‑1 (MQ=255)
                                                                                                                                                                                                          aCCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTACATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCg                                  <  1:51321/239‑1 (MQ=255)
                                                                                                                                                                                                          aCCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCAGCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTg                                                                                                          <  2:661833/167‑1 (MQ=255)
                                                                                                                                                                                                          aCCATGAGAGGCGGTCCCCCAACCAGAACGGTAAAAGCCGGTGTAACTAAATCTAATTTCCTCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGTCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCg                                  <  1:1017133/239‑1 (MQ=255)
                                                                                                                                                                                                           tcagcggagCCGATCCCCCCACCAGAGAGTTAACTGACTTTTTAACAAAAGACAATATCATTTTGCACAAATTTACCGAAAACTTTCAGAGTAATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCATCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGc                                 <  2:745807/233‑1 (MQ=255)
                                                                                                                                                                                                                    gCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGGTTTGCGGCactac                                                                                                 >  1:553893/1‑166 (MQ=255)
                                                                                                                                                                                                                      ggTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTg                                                                  >  1:195648/1‑195 (MQ=255)
                                                                                                                                                                                                                      ggTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCAAATTTCATCTTTCACAAATTTACTGGAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTg                                                                  <  2:195648/195‑1 (MQ=255)
                                                                                                                                                                                                                                    aaCGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTTCTTCTCTTCa        >  1:375864/1‑239 (MQ=255)
                                                                                                                                                                                                                                    aaCGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCCCTGGCGTAAACTTTTTCTTCTCTTCa        >  2:1006704/1‑239 (MQ=255)
                                                                                                                                                                                                                                    aaCGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGCCGGCATACCCTTGATCATTCTCACTTACGCTACGATTCACCGTCGCTGGGGTCTCATTTGTCTTCTCTTCa        >  1:731169/1‑239 (MQ=255)
                                                                                                                                                                                                                                     aCGGTAATAGCCGTTGTAACTAATGCCAATTTCATCTTTCACAAATTTACTTAAATCTTTCAAAGTCATGGAAGAATAAATCGGGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTtcttctctt          <  1:504801/236‑1 (MQ=255)
                                                                                                                                                                                                                                     aCGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTtcttctctt          <  1:865889/236‑1 (MQ=255)
                                                                                                                                                                                                                                         tAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTACGATTCAc                                       <  2:453171/203‑1 (MQ=255)
                                                                                                                                                                                                                                         tAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTACGATTCAc                                       >  1:453171/1‑203 (MQ=255)
                                                                                                                                                                                                                                          aaTAGCCGTTTTAACTAAAACCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGGCAGGGAAGAATAAAGCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATTCCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTTCTTCTCTTCATCTTta  <  2:864594/239‑1 (MQ=255)
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                             
TGCATATAGTTCTCGCCACCGGCGTTATCGCCAAACCAGCCGGTAGAGTACTGCTGACCAACGTTACCATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTA‑AC‑TGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCT‑GTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTTCTTCTCTTCATCTTTA  >  NC_000913/3901597‑3902067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A