Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I0 R1 92 125.0 2504412 98.2% 2459332 226.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,904,282 T→G 11.1% I439L (ATC→CTC)  bglF ← fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,904,2820TG11.1% 356.6 / 3.0 124I439L (ATC→CTC) bglFfused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component
Reads supporting (aligned to +/- strand):  ref base T (79/26);  new base G (2/15);  total (81/43)
Fisher's exact test for biased strand distribution p-value = 8.34e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 124 total aligned reads displayed.

CACTTCACCAACCGAGGGCAGAATGGCAATACCTTTACCCAACAGGCCACTGGCAAACGTGGTATCAGCGACGTGAATGAGCGGCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGTACTTACGCGGCAGGTTGACGCCATATACCGCTGGTTCGGTGATACCAAACAGACTCGTCAA  >  NC_000913/3904049‑3904516
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                           
cACTTCACCAACCGAGGGCAGAATGGCAATACCTTTACCCAACAGGCCACTGGCAAACGTGGTATCAGCGACGTGAATGAGCGGCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCaa                                                                                                                                                                                                                                        >  2:838139/1‑239 (MQ=255)
           ccGAGGGCAGAATGGCAATACCTTTACCCAACAGGCCACTGGCAAACGTGGTATCAGCGACGTGAATGAGCGGCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGAGGGCAATG‑ACACCGCCa                                                                                                                                                                                                                            >  2:134841/1‑239 (MQ=255)
               gggCAGAATGGCAATACCTTTACCCAACAGGCCACTGGCAACCGTGGTATCAGCGACGTGAATGAGCGGCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATa                                                                                                                                                                                                                         >  2:756184/1‑238 (MQ=255)
                ggCAGAATGGCAATACCTTTACCCAACAGGCCACTGGCAAACGTGGTATCAGCGACGTGAATGAGCGGCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAAc                                                                                                                                                                                                                       >  2:1237294/1‑239 (MQ=255)
                          cAATACCTTTACCCAACAGGCCACTGGCAAACGTGGTATCAGCGACGTGAATGAGCGGCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAg                                                                                                                                                                                                             >  1:540329/1‑239 (MQ=255)
                                  ttACCCAACAGGCCACTGGCAAACGTGGTATCAGCGACGTGAATGAGCGGCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCCGACGGTCaa                                                                                                                                                                                                     >  2:1018621/1‑239 (MQ=255)
                                   tACCCAACAGGCCACTGGCAAACGTGGTATCAGCGACGTGAATGAGCGGCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGaaa                                                                                                                                                                                                    >  1:1017785/1‑239 (MQ=255)
                                          cAGGCCACTGGCAAACGTGGTATCAGCGACGTGAATGAGCGGCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCACtt                                                                                                                                                                                              >  2:678516/1‑238 (MQ=255)
                                          cAGGCCACTGGCAAACGTGGTATCAGCGACGTGAATGAGCGGCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAAtt                                                                                                                                                                                              >  1:9813/1‑238 (MQ=255)
                                          cAGGCCACTGGCAAACGTGGTATCAGCGACGTGAATGAGCGGCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAAtt                                                                                                                                                                                              >  1:889033/1‑238 (MQ=255)
                                          cAGGCCACTGGCAAACGTGGTATCAGCGACGTGAATGAGCGGCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAAtt                                                                                                                                                                                              >  1:1053616/1‑238 (MQ=255)
                                          cAGGCCACTGGCAAACGTGGTATCAGCGACGTGAATGAGCGGCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGGGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACACATGCGCAACCGATGGCAATG‑ACACCGCAACTAACGCGGGCCCCGACGGCGAAATCAAtt                                                                                                                                                                                              >  2:774805/1‑238 (MQ=255)
                                             gCCACTGGCAAACGTGGTATCAGCGACGTGAATGAGCGGCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCg                                                                                                                                                                                          >  1:807723/1‑239 (MQ=255)
                                              cccctgccaacggtgctcaaggtgACGTGAATCGGGGACTCAATCTCCCCCGTCTTCGGTGAACAGA‑ACCGCCCCCTCCAGAGTGTTG‑AATAACCCTCGGGTGTTTTCGCTCGCGGGCCCCCGGGCGCTGCTTAACGTTTAGGGGTGATGAAATGAAACATCCCCGC‑CCCGACAAAGGGCCAACCGATGTCATTG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGt                                                                                                                                                                                         <  2:225956/216‑1 (MQ=255)
                                                       aaCGTGGTATCAGCGACGTGAATGAGCGGCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCAGTTGACGGGAt                                                                                                                                                                                >  1:1205046/1‑239 (MQ=255)
                                                         cGTGGTATCAGCGACGTGAATGAGCGGCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATgg                                                                                                                                                                              >  1:546975/1‑239 (MQ=255)
                                                                   gCGACGTGAATGAGCGGCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGaa                                                                                                                                                                    >  1:568694/1‑239 (MQ=255)
                                                                   gCGACGTGAATGAGCGGCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGaa                                                                                                                                                                    >  2:455088/1‑239 (MQ=255)
                                                                    cGACGTGAATGAGCGGCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGAGGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAg                                                                                                                                                                   >  2:86958/1‑239 (MQ=255)
                                                                      aCGTGAATGAGCGGCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGCCGGTGAAATCAATTCCCGTTGACGGGATGGCTTGCATGAAGGt                                                                                                                                                                 >  2:303724/1‑239 (MQ=255)
                                                                                 cGGCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTg                                                                                                                                                      >  1:453438/1‑239 (MQ=255)
                                                                                   gctccaTCTCCCCGGTAACCGGTGAACAGATCCCGCCCCGCCCGG‑GTGTTAAAAAAC‑CCTCTGGTGTTTTCTCGGGGGGGGCACTCTCCCGGGGCTGGCGTTTAGGGGTGAGGAAAGAAAGCAGCACGGT‑GCCGAAAATGGCCCAGCCGATGCAAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTgg                                                                                                                                                     <  2:178191/233‑1 (MQ=255)
                                                                                   gaccaccctcgcCCGTGCTCGGTAAACAAACCCCGCCCGACGAAG‑GTGGTTTAATCA‑CCTCGTGTGTTTTTGGTTGCGGGCCCCCCGGGTGTGGTTGCGGTTTAGCGGTAAGAAAAAGAAACATCACCGT‑CCCGAAAAAGGCGCAAACGATGGAAAGG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTgg                                                                                                                                                     <  2:1007053/231‑1 (MQ=255)
                                                                                   gCACATCCTCCCCCGTCACGGGTGACCAGTTACCGCCCTCCTCGG‑GTGTTGTAATAC‑CCTCTGTTGTTTTTTCTGGGGGGGCCCCCTGCGCTGGCTGCCGTTTAGGGGTGAAAAAATGAAGCATCACCGT‑ACCGACAAATGCGCACCCGAGGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTgg                                                                                                                                                     <  2:41920/238‑1 (MQ=255)
                                                                                   gCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGc                                                                                                                                                    >  1:1064233/1‑239 (MQ=255)
                                                                                         tctccacggTCATCGGTGAAAAGAACCCGCCTGGCTCAG‑TTGGTGTAATAC‑CCTCTGGTGTTTGCTCTTGCGGGGCCCCCTGCGCTGGCTGACGTTTAGCGGTGATGAAAGGAAGCATCACCGT‑ACCGAAAAATGCGCAACCGATGGAAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCa                                                                                                                                              <  1:233576/231‑1 (MQ=255)
                                                                                         gcccccccGTCATCGGGGACAAGCCCCCCCCCTGCCGGG‑GTGTTGTAATAC‑CCGCTGGTGTTTCCTCTTGCGGGGCACCCTGGGCGGGTTCACTTTTAGCGGTGATAAAATGAAGCACCCCCGC‑CCCAACAAAGGCACAAACATGGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCa                                                                                                                                              <  2:1205046/234‑1 (MQ=255)
                                                                                                 gTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTa                                                                                                                                      >  2:811323/1‑239 (MQ=255)
                                                                                                       ggTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACtt                                                                                                                                 >  2:951160/1‑238 (MQ=255)
                                                                                                                aTACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTgcgc                                                                                                                       >  1:56736/1‑239 (MQ=255)
                                                                                                                 tcccGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGTTGTTTTCTCTGGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATAAAATGAGGCACCACCGT‑ACCGAAAAATGCGCAACCGATGGAAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGcgcg                                                                                                                      <  1:838139/237‑1 (MQ=255)
                                                                                                                 tACCGCCCTGCTTAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTGGCGGGGCCCCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACGGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGcgcg                                                                                                                      <  1:290272/239‑1 (MQ=255)
                                                                                                                  cgccgctatgcgaggggtgtgaAATAC‑CCTCGGGTGTTGTCTCTGGGGGGGCCCCCTGCGTGGGCTGACGTTGAGCGGTGATAAAAAGAACCACCACCGG‑CCCGACAAATGCGAAACCGAGGGCAAGG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGcgcg                                                                                                                      <  2:513298/221‑1 (MQ=255)
                                                                                                                  aCCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGt                                                                                                                     >  1:1187433/1‑239 (MQ=255)
                                                                                                                   cccccttgctggg‑gtggtGTAATAC‑CCTCTGGTGTTTTCTCGGGGGGGCCCCCCGGCGCTGGCTGACGTTTAGGGGTGATGAAATGAAGCATCCCCGT‑ACCGACAAAGGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTa                                                                                                                    <  2:166740/227‑1 (MQ=255)
                                                                                                                   ccccccTGCTGAG‑GTGGTGTAATAC‑CCTCGGGTTTTTCCTCTTGCGGGCCCCCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCACCACCGT‑ACCGAAAAATGCGCACCCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTa                                                                                                                    <  2:241162/236‑1 (MQ=255)
                                                                                                                   ccccccTGCTCAG‑GTGTTGTAATAA‑CCTTTGGTTTTTTCTCTTGCGGGGCCCCCTGCGCGGGCTGACGTTTAGGGGTAATGAAAGGAAGCACCCCCGT‑ACCAACAAATGCGCAACCGATGGAAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTa                                                                                                                    <  1:753661/236‑1 (MQ=255)
                                                                                                                   ccGCCCGGCTCGG‑GGGTTGTAATAA‑CCTCGGGTTTTTTCTCGTGCGGGCCCCCCGGCGCGGGCTGACGTTGAGCGGTGAAGAAATGAAGGACCCCCGT‑ACCGAAAAATGCGAAACAGATGAAAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTa                                                                                                                    <  2:868265/239‑1 (MQ=255)
                                                                                                                    cgtgccgtcgagggtgtgataataa‑CCTCGGGTGTTTGCTGTTGGGGGGCACCGGGCGTGGGGATAGGTTGAGGGGGGATGAATGGAAACATCACGGA‑ACGGAAAAATGCGAAACTGAGGGAAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTa                                                                                                                    <  1:101435/220‑1 (MQ=255)
                                                                                                                     gCCCTGCTCAG‑GTGGTTTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCCCCCTGCGCTGGCTGACGTTTAGCGGTGATAAAATGAAGCATCACCGT‑ACCGACAAAGGCGCACCCGATGGAAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGc                                                                                                                  <  1:134841/239‑1 (MQ=255)
                                                                                                                     gCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAg                                                                                                                   >  1:868265/1‑238 (MQ=255)
                                                                                                                        cTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCaa                                                                                                               >  1:1215621/1‑239 (MQ=255)
                                                                                                                         tGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCaat                                                                                                              >  2:1009551/1‑239 (MQ=255)
                                                                                                                          gCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTTTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCaata                                                                                                             >  2:560328/1‑239 (MQ=255)
                                                                                                                          gCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCaata                                                                                                             >  1:237276/1‑239 (MQ=255)
                                                                                                                                 gtggtgTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAACTCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAAtggtg                                                                                                       >  2:348600/1‑239 (MQ=255)
                                                                                                                                    gtgtAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTGGACTTTCGTTTGCGCGTAGCCAATAATGGTGGc                                                                                                     >  1:1018137/1‑238 (MQ=255)
                                                                                                                                      gtAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGccc                                                                                                   >  2:703762/1‑238 (MQ=255)
                                                                                                                                      gtAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGccc                                                                                                   >  2:1237564/1‑238 (MQ=255)
                                                                                                                                      gtAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGccc                                                                                                   >  1:544573/1‑238 (MQ=255)
                                                                                                                                           aa‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCaaa                                                                                              >  1:226472/1‑238 (MQ=255)
                                                                                                                                           aa‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGAGGTGCTGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGAAGGTGAAATAAATTACCGTCGACGGGATGGTTTGCATGACGGTGAAAATACTTGTCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTCGCCACTAATGGTGTACCCCaaa                                                                                              >  2:349233/1‑238 (MQ=255)
                                                                                                                                              aagaggtgaaaaagagagggggggCCCCCTGGGCGGGTTGAGTTTTAGGGGTGATGAAAGGAAGCCTCACCGT‑CCCGACAAATGCGCAACCGATGGAAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGc                                                                                            <  2:228216/218‑1 (MQ=255)
                                                                                                                                               ctggtgtttgtttgctgggggggCCCCCGGGACTGCCTGATGTTGAGGGGGAATGAAATAACGCATC‑CCGTCCCCGACAAAGGCGCACACGAGGTAAAAG‑ACGCCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGc                                                                                            <  2:113046/218‑1 (MQ=255)
                                                                                                                                               ctctGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGcc                                                                                           >  1:920307/1‑238 (MQ=255)
                                                                                                                                                tctGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGcccc                                                                                         >  1:1173019/1‑239 (MQ=255)
                                                                                                                                                tctGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGcccc                                                                                         >  1:6102/1‑239 (MQ=255)
                                                                                                                                                tctGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGcccc                                                                                         >  1:375134/1‑239 (MQ=255)
                                                                                                                                                  tGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATCCTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGcccc                                                                                         >  1:1133742/1‑237 (MQ=255)
                                                                                                                                                  tGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGcccc                                                                                         >  2:955525/1‑237 (MQ=255)
                                                                                                                                                  tGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCACAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAACTACTTGGTAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGAGGCCCCCAAAGcccc                                                                                         >  2:1222828/1‑237 (MQ=255)
                                                                                                                                                       ttttCTCTTGCGGGGCCCCCTCCGCTGGCTGACGTTTAGCGTTGATGAAATGAACCACCCCCCT‑CCCGACAAATGCGCAACCGTTGGCAATA‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATa                                                                                  <  1:678516/239‑1 (MQ=255)
                                                                                                                                                       ttttCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGAt                                                                                   >  2:519401/1‑238 (MQ=255)
                                                                                                                                                       ttttCTCTGGCGGGGCCCCCTGCGCTGGCTGAGGTTTAGGGGTGATGAAATGAAGCACCACCGT‑ACCGAAAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATa                                                                                  <  1:922315/239‑1 (MQ=255)
                                                                                                                                                        tttCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATAc                                                                                 >  2:1173788/1‑239 (MQ=255)
                                                                                                                                                        tttCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATAc                                                                                 >  2:795331/1‑239 (MQ=255)
                                                                                                                                                         ttCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACa                                                                                >  2:297455/1‑239 (MQ=255)
                                                                                                                                                          tctcTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAg                                                                               >  1:775684/1‑239 (MQ=255)
                                                                                                                                                              ttGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAAtg                                                                                                          >  1:867566/1‑208 (MQ=255)
                                                                                                                                                                     gCACCCTGCGCTGCCTGACTTTAAGCGGTGATAAAATAAGGAATCCCCGT‑CCGGACAAAGCCGCAACGAATGGAAATA‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACaa                                                                     <  1:17141/238‑1 (MQ=255)
                                                                                                                                                                      cACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATaa                                                                        >  1:871421/1‑234 (MQ=255)
                                                                                                                                                                             cgcTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATa                                                                                  >  1:228216/1‑217 (MQ=255)
                                                                                                                                                                                tggctgACTTTGAGGGGTGATGAAAGGAAGCACCACCGA‑ACCGAAAAATGCGCAACCGAGGGAAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGTACTTa                                                          <  1:477633/238‑1 (MQ=255)
                                                                                                                                                                                     gagttttAGGGGGGATGAAATAAAGCATCACCGC‑ACCAAAAAATGCCCAACCGATGAAAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGTACTTACGCgg                                                     <  2:889033/234‑1 (MQ=255)
                                                                                                                                                                                       cGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGAACTTACGCGGCAg                                                  >  1:512718/1‑239 (MQ=255)
                                                                                                                                                                                           tAGGGGTGATGAAATGAAGCACCACCGT‑ACCGACAAATGCGCAACCGATGGCAAGG‑CCACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGTACTTACGCGGCAGGTTg                                              <  1:337018/239‑1 (MQ=255)
                                                                                                                                                                                           tAGGGGTGATAAAATGACACATCCCCGT‑ACAGAAAAATGCCCAACGGAGGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGTACTTACGCGGCAGGTTg                                              <  2:1187433/239‑1 (MQ=255)
                                                                                                                                                                                           tAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGTACTTACGCGGCAGGTTg                                              <  1:1009551/239‑1 (MQ=255)
                                                                                                                                                                                            aGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGTCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGCTACTTACGCGGCAGGTTg                                              >  2:1208576/1‑238 (MQ=255)
                                                                                                                                                                                            aGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGAGGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAAtggtgg                                                                                                      <  1:404879/182‑1 (MQ=255)
                                                                                                                                                                                              gggTGATAAAAGGAACCACCCCCGT‑CCCGAAAAATCCGCAACCGAGGGAAATC‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACaa                                                                     <  2:1212873/212‑1 (MQ=255)
                                                                                                                                                                                              cGGTGATGAAATGAGGCATCCCCGT‑ACAGAAAAATGCGCAACCGAGGGAAATA‑AAACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGTACTTACGCGGCAGGTTGa                                             <  1:1013789/237‑1 (MQ=255)
                                                                                                                                                                                               ggtgaagaaaagcacacacccgat‑ACCGACAAATGCCAAACCGAGGAAAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGTACTTACGCGGCAGGTTGACg                                           <  2:507376/215‑1 (MQ=255)
                                                                                                                                                                                               gggaatgaaataacgaacacccGG‑ACGGACAATAGCCCACCCGA‑GGGAATGAACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGTACTTACGCGGCAGGTTGACg                                           <  1:319010/218‑1 (MQ=255)
                                                                                                                                                                                                 tgatgaAATGAATCCCCCCCGT‑CCCGACAAGTGCGCAACAGATGGAAAGG‑CCACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGTACTTACGCGGCAGGTTGACGcc                                         <  2:226472/238‑1 (MQ=255)
                                                                                                                                                                                                   atgaaatgaaGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGTACTTACGCGGCAGGTTGACGCCata                                      >  1:157399/1‑239 (MQ=255)
                                                                                                                                                                                                   atgaaatgaaGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCACGTTGACGGGAGGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGTACTTCCGCGGCCGGTTgcacccata                                      >  2:550734/1‑231 (MQ=255)
                                                                                                                                                                                                        atgaaGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGGACtt                                                           >  1:1212873/1‑213 (MQ=255)
                                                                                                                                                                                                        aggaaGCACCCCCGT‑ACCGAAAAATGCGCACCCGATGGAAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGTACTTACGCGGCAGGTTGACGCCATATACCg                                 <  2:540329/237‑1 (MQ=255)
                                                                                                                                                                                                           aaGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGTACTTACGCGGCAGGTTGACGCCATATACCGCTg                              >  2:184560/1‑239 (MQ=255)
                                                                                                                                                                                                                tCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGTACTTACGCGGCAGGTTGACGCCATATACCGCTGGTTCg                         >  2:683552/1‑239 (MQ=255)
                                                                                                                                                                                                                         ccGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGTACTTACGCGGCAGGTTGACGCCATATACCGCTGGTTCGGTGATAcc                 >  2:691918/1‑239 (MQ=255)
                                                                                                                                                                                                                         ccGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGTACTTACGCGGCAGGTTGACGCCATATACCGCTGGATCGGTGATAcc                 >  2:537057/1‑239 (MQ=255)
                                                                                                                                                                                                                            aaaaaTGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGcccc                                                                                         <  1:213655/162‑1 (MQ=255)
                                                                                                                                                                                                                            aCAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGcccc                                                                                         >  2:213655/1‑164 (MQ=255)
                                                                                                                                                                                                                                 tGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAg                                                                   >  1:484929/1‑181 (MQ=255)
                                                                                                                                                                                                                                   cgcAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGTACTTACGCGGCAGGTTGACGCCATATACCGCTGGTTCGGTGATACCAAACAGACTc       >  1:969742/1‑239 (MQ=255)
                                                                                                                                                                                                                                     cAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGTACTTACGCGGCAGGTTGACGCCATATACCGCTGGTTCGGTGATACCAAACAGACTCg      >  2:897679/1‑238 (MQ=255)
                                                                                                                                                                                                                                        ccGAGGGAAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGTACTTACGCGGCAGGTTGACGCCATATACCGCTGGTTCGGTGATACCAAACAGACTCGTCaa  <  1:48586/239‑1 (MQ=255)
                                                                                                                                                                                                                                           aTGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGGGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGTACTTACGCGGCAGGTTGACGCCATATACCGCTGGTTCGGTGATACCAAACAGACTCGTCaa  >  2:729107/1‑236 (MQ=255)
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                           
CACTTCACCAACCGAGGGCAGAATGGCAATACCTTTACCCAACAGGCCACTGGCAAACGTGGTATCAGCGACGTGAATGAGCGGCACAATCTCTCCCGTCATCGGTGAACAGATACCGCCCTGCTCAG‑GTGGTGTAATAA‑CCTCTGGTGTTTTCTCTTGCGGGGCACCCTGCGCTGGCTGACGTTTAGCGGTGATGAAATGAAGCATCACCGT‑ACCGACAAATGCGCAACCGATGGCAATG‑ACACCGCCAATAACGCTGGCCCAGACGGTGAAATCAATTCCCGTTGACGGGATGGTTTGCATGAAGGTGAAAATACTTGGCAAACCAAAGGAGTAGACTTTCGTTTGCGCGTAGCCAATAATGGTGGCCCCCAAAGCCCCACTGATACAGGCGATAACAAAGGGGTACTTACGCGGCAGGTTGACGCCATATACCGCTGGTTCGGTGATACCAAACAGACTCGTCAA  >  NC_000913/3904049‑3904516

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A