Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F9 I0 R1 260 102.5 2178490 93.2% 2030352 226.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,978,861 A→C 15.8% T88P (ACC→CCC)  wzyE → putative ECA polysaccharide chain elongation protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,978,8610AC15.8% 183.5 / 4.0 96T88P (ACC→CCC) wzyEputative ECA polysaccharide chain elongation protein
Reads supporting (aligned to +/- strand):  ref base A (47/30);  new base C (6/13);  total (53/43)
Fisher's exact test for biased strand distribution p-value = 3.74e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CTGTTTGTTGTCTGGCTGCTCTGCACGCTGTTTATTGCCACGCTGACCTGGTTTGAGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGCTTTTTGCTGTTCCGGCTTAACTCCTAC‑AGTCAGATCTTTTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGCTTCTTTTACTTTTTCATCC  >  NC_000913/3978624‑3979098
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                              
cTGTTTGTTGTCTGGCTGCTCTGCACGCTGTTTATTGCCACGCTGCACTGGTTTGAGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTGTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCa                                                                                                                                                                                                                                                <  1:620097/238‑1 (MQ=255)
 tgtttgttGTCTGGCTGCTCTGCACGCTGTTTATTGCCACGCTGACCTGGTTTGAGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCAcc                                                                                                                                                                                                                                              >  1:473306/1‑239 (MQ=255)
   tttgttGTCTGGCTGCTCTGCACGCTGTTTATTGCCACGCTGACCTGGTTTGAGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGGATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTa                                                                                                                                                                                                                                            >  1:891817/1‑239 (MQ=255)
      gttgtCTGGCTGCTCTGCACGCTGTTTATTGCCACGCTGACCTGGTTTGAGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTCCGGGCTGCTTCTACCCGGTTTACTATTTCCCCTACaa                                                                                                                                                                                                                                         >  2:906169/1‑239 (MQ=255)
             ggCTGCTCTGCACGCTGTTTATTGCCACGCTGACCTGGTTTGAGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTTCGGGCTGCTTCTACGCGGTTTACTATGTACCCTACAAAACCCg                                                                                                                                                                                                                                   >  1:699193/1‑238 (MQ=255)
             ggCTGCTCTGCACGCTGTTTATTGCCACGCTGACCTGGTTTGAGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTCCCAAAc                                                                                                                                                                                                                                      >  1:709690/1‑235 (MQ=255)
             ggCTGCTCTGCACGCTGTTTATTGCCACGCTGACCTGGTTTGAGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCg                                                                                                                                                                                                                                   >  1:754334/1‑238 (MQ=255)
                    ctGCACGCTGTTTATTGCCACGCTGACCTGGTTTGAGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTCCTATGTCACCTACAAAACCCGCCTACGCa                                                                                                                                                                                                                           >  1:812242/1‑239 (MQ=255)
                           tttttttttccccccgtgctcTGTTTTGATTTTGCCCGTTTGCTTTTTAACTTCATTGTCTTTTTTT‑CATTGCTGTTTTTGCTCCCCTTTTTCTTCGGCTCCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGt                                                                                                                                                                                                                    <  2:1076287/219‑1 (MQ=255)
                           tttttgttatggtgatgttcttggttttggtttCGCCGTTTTCTTTTTACTTTAAATTTCTTTTTTT‑CAGTGCTTTTTTTGCTCACTTTTTTGTTCGGCTCCCCGCGGGCCAGCTTG‑CTGGTTTTTCGTTTGGTTGTGGGGGTCGGGCCGCCAGAAATCTTGTTGCGGGCGTTGTTTTCTGCGGGCTGCTTCTGCGCGGTTTATTATGTCACCTACAAAACCCGCCTACGCAAACGCGt                                                                                                                                                                                                                    <  2:476395/218‑1 (MQ=255)
                           ttGTTTATTGCCCCGCTGCCTTTGTTTGTTTTTCGCCGTGTTGGTTTTACCTTCAATGTCTTCTTTT‑CATTGTTGTTTTTGCTCTCTTTTTTCTTCGGCTTCCCGCTGCCCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGTTGCTTCTACGCGTTTTACTATGTCACCTACAAACCCCGCCTACGCAAACGCGt                                                                                                                                                                                                                    <  2:977164/238‑1 (MQ=255)
                           ctttttttttcccctcTGCCCTGTTTTGGGTTTTGCCGTGTGCGTTTTAACTTCAAGTTCCTCTTTT‑CAATGGTGTTTTTGCTCCCCTTTTTCTTCGGCTCCCCGCTGACCAGCGTG‑CTGGTTTTTCGCTTTGATGTTGGTGTCGGCCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCCCCTACAAAACCCGCCTACGCAAACGCGt                                                                                                                                                                                                                    <  2:812242/224‑1 (MQ=255)
                           cTGTTTATTGCCACGCTGACCTGGTTTGAGTTTCGCCGTGTGCTCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTCCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGGGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGt                                                                                                                                                                                                                    <  1:916222/239‑1 (MQ=255)
                            tGTTTATTGCCACGCTGACCTGGTTTGAGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCGGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTAACCTACAAAACCCGCTCACGCAAATCCGtt                                                                                                                                                                                                                   >  1:484708/1‑239 (MQ=255)
                            tGTTTATTGCCACGCTGACCTGGTTTGAGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGCATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCCACAAAACCCGCCTACGCAAACCCGtt                                                                                                                                                                                                                   >  1:660520/1‑239 (MQ=255)
                                     cccacctgcctttttttGGGTTTCGGCGGGTGGGTTTTTACTTCATTGTCTTTCTTT‑CATTGCTTTTTTTGCTCCCTTTTTTCTTCGGCTTCCCGCGGACCAGCGTC‑CTGGTTTTTCGGTTTGATGTTGGTGTCGCGCCGCCAGAAATTTTTTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTGCGCGGTTTACTATGTCCCCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTa                                                                                                                                                                                                          <  2:396924/225‑1 (MQ=255)
                                      cACGCTGACCTGGTTTGAGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTTTACGCGGTTTACTATTGCACCTACAAAACCCGCCCACGCAAACGCGtggtgtattac                                                                                                                                                                                                          >  2:354654/1‑228 (MQ=255)
                                        cGCTGACCTGGTTTGAGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTTTCGCGCCGACAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTATTATGTCCCCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGGAcg                                                                                                                                                                                                        >  1:1053837/1‑237 (MQ=255)
                                        cGCTGACCTGGTTTGAGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTTCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCCCCTACAAAACCCCCCTCCCCAAACGGGTTGCTGATGTAcag                                                                                                                                                                                                       >  2:257061/1‑237 (MQ=255)
                                        cGCTGACCTGGTTTGAGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCATTCGTTGCTTTTTTCGGGGTCGTTCTACGCGGTTTATTATGTACCCTACCAAACCCGCCTCAGCAAACCCGTGGTTGATTTAcc                                                                                                                                                                                                        >  1:1055213/1‑238 (MQ=255)
                                        cGCTGACCTGGTTTGAGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCCCCTACAAAACCCGCCTCCGCAAACCCGTTCCTGGTGTCCcg                                                                                                                                                                                                       >  2:577441/1‑239 (MQ=255)
                                        cGCTGACCTGGTTTGAGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTCCAAAACCCGCCTACGCAAACGACTTGcggtgttaccg                                                                                                                                                                                                       >  1:300774/1‑229 (MQ=255)
                                        cGCTGACCTGGTTTGAGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTAcc                                                                                                                                                                                                        >  1:713565/1‑238 (MQ=255)
                                        cGCTGACCTGGTTTGAGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACCCGTTGCTGGTGTAcc                                                                                                                                                                                                        >  1:962394/1‑238 (MQ=255)
                                                 ttttttgttttccccgttgtgtttttAACTTCAATGTCTTTTTTT‑TATTTTTGTTTTTCCTCCCTTTTTTCTTCGGTTTCCCGCTGCCCAGGGTG‑TTGGTATTTCGTTTTGATGTTGGGGTCGGCCCGCCAGAAATCTTGTTGCAGGGGTTTTTTTCTGCGGGCGGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCg                                                                                                                                                                                              <  2:904840/216‑1 (MQ=255)
                                                 tttttGAGTTTCGCTGTTTGCGCTTTAACTTAAATTCCTTCTTTTACTTTGCT‑TTGTTGCTCCCCTTTTTCTTCGGCCGCCCGCTGACCAGTGTG‑CTGGTATTTCGCTTTGAGTGTGGTGTCGCGCCGCCAGAAATCTTGTTGCGGGCGTTGCTTCCTGCGGGCTGCTTCTACCCGTTTTACTAGGTCACCTCCAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCg                                                                                                                                                                                              <  2:1053837/237‑1 (MQ=255)
                                                     tttttttccctttttgccttttAACTTCATTTTTTTCTTTT‑CATTTCTGTTTTGTCTCACTTTTTTCTTCGGTTTCCCGCTGCCCGGCGTG‑CTGGTATTCCGCTTTGATGTGGGGGCCCGGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATTTCACCTACAAACCCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGt                                                                                                                                                                                          <  2:259129/220‑1 (MQ=255)
                                                     tgtttttCGCCGTGTGTCTTTTAATTTCAATGTTTTCTTTT‑CTTGGCTTTTTTTGCTCCTTTTTTTTTTGGGCTCCCCCGTGACCAGGGTG‑CGGGTATTTCGCTTGGATGTTGGTGTCGCGCCCCAAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCCCCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGt                                                                                                                                                                                          <  2:754334/235‑1 (MQ=255)
                                                     tggttttCGCGTTTTGCGTTTTAACTTCAATTTCTTTTTTT‑CATGGCTGTTTTTGCTCACTTTTTTCTGCGGCTTCCCGCGGCCAAGCGTG‑CGGGTATTTCGCTTTGAGGTTGGTGTCGGGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGTTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGt                                                                                                                                                                                          <  2:1004394/235‑1 (MQ=255)
                                                     tGAGTTTCGCCGTGTGCGCTTTACCTTCAATGTCTTCTTTT‑CATTGTTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGt                                                                                                                                                                                          <  1:354654/239‑1 (MQ=255)
                                                       aGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTCCAAAACCCGCCTACGCAAACGCGTTGCTGAGGTACCCCGCCGTCCGCTGttt                                                                                                                                                                                        >  1:300862/1‑239 (MQ=255)
                                                       aGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCCAACGCGTTGCTGATGTa                                                                                                                                                                                                          >  1:476395/1‑221 (MQ=255)
                                                       aGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCTCGCAGTCCGCGGttt                                                                                                                                                                                        >  1:405792/1‑239 (MQ=255)
                                                       aGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGttt                                                                                                                                                                                        >  1:244395/1‑239 (MQ=255)
                                                       aGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGtt                                                                                                                                                                                         >  1:355096/1‑238 (MQ=255)
                                                       aGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGCCCCCGGttt                                                                                                                                                                                        >  2:990140/1‑239 (MQ=255)
                                                                    gctttttAATTTCAATGTCTTCTTTT‑CTTTGCTGTTTTTGCTCCCCTTTTTCTGCGGCTCCCCGCTGCCCGGCGTT‑CTGGTATTTCGCTTTGATGTTGGTGCCGCGCCGCCAGAAATTTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTCCGCGGTTTACTATGTCACCTACAAACCCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACcgcg                                                                                                                                                                           <  2:330111/235‑1 (MQ=255)
                                                                        tttAACTTCTATTTTTTTTTTT‑CTTTGCTGTTTTTGCCCCGCTTTTTCTTCGGCTTCCCGCTGCCCAGCGTG‑CTGGTATTTCGGTTTGATGTTGGTGGCGGGCCGCCAGAAATTTTGTTGCAGGCTTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCCCCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGga                                                                                                                                                                       <  2:619156/239‑1 (MQ=255)
                                                                           tctttCAATTTCTTTTTTT‑CATTGCTGTTTTTGCCACCCTTTTTCTTCGGTTTCCCGCTGCCCGGCGTG‑CTGGTATTCCGCTTTGATGTTCGTGTCGCGCCGCCAGAATTCTTGTGGCAGGCTTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCCCCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGAc                                                                                                                                                                    <  2:1062938/236‑1 (MQ=255)
                                                                           aaCTTCAATTTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGGGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCCCCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGAc                                                                                                                                                                    <  1:577441/239‑1 (MQ=255)
                                                                                ctattttttttttt‑CATTTTTTTTTTTGCTCCCTTTTTTCTCCGGCTTCCCGCTGCCCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATc                                                                                                                                                               <  2:55131/229‑1 (MQ=255)
                                                                                cAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGAccca                                                                                                                                                                 >  1:722546/1‑235 (MQ=255)
                                                                                 cattttttttttttttgttcTGTTTTTTCTCCCCTTTTTCTTGGGCTTCCCGCTGACC‑GTGTGTGTGGTTTTGCGCTTTGATGGTGGTGCCGCCCCGCCGGAAATCTTGTTGAGGTCGTTGCTTTCTGCGGGCTTCTTCCACGCGGTTTACTATGTCCCCTCCAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATc                                                                                                                                                               <  2:782986/220‑1 (MQ=255)
                                                                                  agttcttctTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCTTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCtt                                                                                                                                                             <  1:909505/236‑1 (MQ=255)
                                                                                    tttttctttt‑cttTTTTTTTTTTTCTCCCTTTTTTTTTCGGCTTCCCGTGGCCCAGCGTG‑CTGGTTTTTGGCTTTGAGTTTGGGGGCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGTTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCCCCTACAAACCCCGCCTACGCAAACGTGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTAc                                                                                                                                                           <  2:473306/236‑1 (MQ=255)
                                                                                       ttcttTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCCCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACggg                                                                                                                                                        >  2:385794/1‑237 (MQ=255)
                                                                                        tcttTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACAGCGCGGAGACCAATCTTACGTgg                                                                                                                                                       >  1:383417/1‑239 (MQ=255)
                                                                                         cttTT‑ATTTGCTTTTTTTGCCCCCGTTTTTCTTCGGCTTCCCGGTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTggg                                                                                                                                                      <  1:151616/239‑1 (MQ=255)
                                                                                            tttttttgttttttttGCTTCCTTTTTCCTTGGGTTTCCCGGTGACCGGCGTG‑CGGGTTTTTCGTTTTGTTGTTGGGGTCGGGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCCCCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTg                                                                                                                                                    <  2:355096/228‑1 (MQ=255)
                                                                                            tt‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCGTTTTACCATGAACCCCGTGGAGACCAATCTTACGGGGTTg                                                                                                                                                    >  2:932677/1‑238 (MQ=255)
                                                                                               gttttttttaagagaccgttttttttttCGGTTTCCCGCTGCCCAGGGTG‑CTGTTATTTCGTTTTGATGTTGGTGTCGCGCCGCAAGAAATCTTGTTGCAGGCGTTGCTTTCGGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATc                                                                                                                                                 <  2:90354/219‑1 (MQ=255)
                                                                                                aTTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACACAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCACTGTTTACCATGAACCGCTTGGAGACCCATCTTACTTGGGTGAt                                                                                                                                                  >  1:517233/1‑237 (MQ=255)
                                                                                                aTTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAACCTTCCGTGGGGGATca                                                                                                                                                >  2:232329/1‑238 (MQ=255)
                                                                                                aTTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTT‑CTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCCCGTGGAGACCAATCTTACGTTGGTGATcc                                                                                                                                                >  1:606280/1‑238 (MQ=255)
                                                                                                  tGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGGGGGTGATccgg                                                                                                                                              >  1:560921/1‑237 (MQ=255)
                                                                                                         tttGCCCACCTTTGTCGTCGGTTTCCCGCTTGCCAGGGTG‑CTGGTTTTTCGGTTTGATGTTGGTGTCGCGCCGCCAAAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGTTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTa                                                                                                                                       <  1:906169/239‑1 (MQ=255)
                                                                                                            gCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGGGATCCGGAGGGGTATc                                                                                                                                     >  2:11468/1‑238 (MQ=255)
                                                                                                             cTCCCCTTTTTCTTCGGCTTCCCGCTGACAAGGGTG‑CTGGTATTTCGCTTGGATGTTGGTGTCGCGCCGCCAGAATTCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATcgc                                                                                                                                   <  1:940229/239‑1 (MQ=255)
                                                                                                              tctcttttttCTTCGGTTTCCCGATGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGTTGTCGCGCCGCCAGAAATTTTGTTGCCGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATcgcg                                                                                                                                  <  1:425490/234‑1 (MQ=255)
                                                                                                                   ttttttttCGGTTCCCCGGTGACCTGGGTG‑CTGGTTTTTCGTTTTGATGTTGGTGTCGGCCCGCCAGAAATTTTGTTGCAGGCGTTGCTTTCGGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAACCCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGt                                                                                                                             <  2:722546/239‑1 (MQ=255)
                                                                                                                   tttttCTTGGGCTCCCCCCGGACCAGGTGG‑GTGGTTTTTGGTTTTGTTGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCGTCCTGCGGGTTGCTTCTACGCGTTTTACTAGGTCACCTAAAAACCCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGt                                                                                                                             <  2:952531/239‑1 (MQ=255)
                                                                                                                          tcGGCTCCCCGCTGACCAGGGTG‑CTGGTTTTTCGCTTTGAGTTTGGTGGCGCGCCGCAAGAAATTTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTc                                                                                                                      <  1:990140/239‑1 (MQ=255)
                                                                                                                            ggCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGGGACCAATCTTACGTGGGTGATCCTGATGGGTa                                                                                                                                       >  1:90354/1‑220 (MQ=255)
                                                                                                                            ggCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGCTGCTTTCTCAGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCACACGCGTTGCTGATGTACCCCGCCGTCCGCTGTTCACCATCAACCCCGTCGAGCCACACCTTACGTGGGGGATCCTGTTggcgtaccacctcgtaaagtccg                                                                                                                     >  2:373972/1‑217 (MQ=255)
                                                                                                                              cTTCCCGCTTACCGGGGTG‑GTGTTTTTTCGCTTTGAGTTTGGGTTGGCGCTGCCAAAAATCTTGTTCGAGGTTTTGCTTTCTGCGGGCTGTTTCTACGCTGTTT‑TTATGTCACCTAAAAATCCCGCCTACGGAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGACCCTGATGAGTATCGCGCTGGTAAGTGTCGGCAt                                                                                                                 <  2:606280/239‑1 (MQ=255)
                                                                                                                                 cccGGTGACCAGCTGC‑CGGGTATTTCGCTTTGATGTTGGTGGCGCCCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCAtct                                                                                                               <  1:1066176/239‑1 (MQ=255)
                                                                                                                                        aCCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACACAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATCAACCGCGTGGCGACCAATCTTACGTGGGGGATCCTGATGGGAAACGGGCTGGTAAACGCCGGACTCTTCTTCag                                                                                                        >  2:487285/1‑238 (MQ=255)
                                                                                                                                        aCCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCCTGGAGACCAATCTTACGTGGGTGATCCTGTTGGGTATCGCGCGGGGAAACGTGGGCATCTCCTTCag                                                                                                        >  2:389906/1‑238 (MQ=255)
                                                                                                                                               gttcTGGTATGTCGTTGTGATGTTGGTGTCCCGCCGCCAGAATTTTTGTTGCAGGGGTTGCTTTCCGCGGGCTGCTTCTACGCGGTTTACTATGTCCCCTAGAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACaa                                                                                                  <  1:932677/236‑1 (MQ=255)
                                                                                                                                               gtgtttgtttttCGTTTTGTTGTTGGTGTCCCGCCGCCATAAATTTTGTTGCAGGCGTTGCTTTCTGGGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACaa                                                                                                  <  2:1211/230‑1 (MQ=255)
                                                                                                                                                    ggTTTTTCGCTTTGATTTTGGTTCCGCGCCTCCAGAATTCTGCTTGCAGGCGTTGCTTTCGGCGGGCTTCTTCTACGCGGTTGTCTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGTCCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGCt                                                                                             <  1:135654/239‑1 (MQ=255)
                                                                                                                                                         ttCGCTTGGATGTTGGTGTCGCGCCGCAAGAACTTTTGTGGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCCCCTACAAACCCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGCTTTTTg                                                                                        <  1:257061/239‑1 (MQ=255)
                                                                                                                                                          tCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTCCTGATGTACCGCGCCGTCCTCTGTTTACCATGAACCGCGTGGAGACCCATCTTACGTGGGCGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTTTTAATCCACAAAGGTTTTTTgt                                                                                       >  2:856337/1‑238 (MQ=255)
                                                                                                                                                                tGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGCATCCCGCTGGTAACCGTCGGCATCTTCTTCATCCACAACGGCTTTTTGCTGTTcc                                                                                 >  1:294528/1‑239 (MQ=255)
                                                                                                                                                                  aTGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGTCATCTTCTTACTGCACAAGGGCTTTTTGTTGTTCCgg                                                                               >  2:1017267/1‑239 (MQ=255)
                                                                                                                                                                             gccccgcaAGATATTTTGTTGCAGCGGTTGCTTTCGGCGGGCTGCTTCTACGCGGTTTACTATGGCACCTCAAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGCTTTTTGCTGTTCCGGCTTAACTCCTa                                                                    <  2:300862/236‑1 (MQ=255)
                                                                                                                                                                                 cgccAGAAATCTTGTTGCGGGCGTTGCTTTCGGCGGGCTGCTTCAACGCGGTTTCCTATGCCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGCTTTTTGCTGTTCCGGCTTAACTCCTAC‑AGt                                                               <  1:214536/239‑1 (MQ=255)
                                                                                                                                                                                           cTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGCTTTTTGCTGTTCCGGCTTAACTCCTAC‑AGTCAGATCtttt                                                     <  1:94921/239‑1 (MQ=255)
                                                                                                                                                                                              gttgCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCTTCGGCATCTTCTTCATGCCCAACGGCTTTTTGCTGTTCCGGCTTAACTCCTAC‑AGTCAGATCTTTTCCa                                                  >  1:483372/1‑239 (MQ=255)
                                                                                                                                                                                              gttgCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCAGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGAAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGTCATCTTCTTCATGCAAAACGGCTTTTTGTTTTCCCGCCTTAA‑TCCCACAAGTCAAATCTTTTcac                                                  >  2:652523/1‑237 (MQ=255)
                                                                                                                                                                                                 gccggCGTTGTTTTCTGCGGGCTGGTTCTACGCGGTTTACTATTTCCCCTAAAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTTCCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGCTTTTTGCTGTTCCGGCTTAACTCCTAC‑AGTCAGATCTTTTCCAGTg                                               <  1:11468/236‑1 (MQ=255)
                                                                                                                                                                                                             ttCGGCGGGCGGCTTCAACGCTGTTTACTGTGGTCCCTACAAAACCCGCCTACGGAACAGCGTTGCTGATGTACCGGGCCGTCCGCTTTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTTATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGCTTTTTGCTGTTCCGGCTTAACTCCTAC‑AGTCAGATCTTTTCCAGTGAAGTCTCCggcg                                   <  1:856337/239‑1 (MQ=255)
                                                                                                                                                                                                              cctggggcttgtttcaccgcgGTTTACTATGCCACCACAAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGCTTTTTGCTGTTCCGGCTTAACTCCTAC‑AGTCAGATCTTTTCCAGTGAAGTCTCCggcgt                                  <  1:34970/222‑1 (MQ=255)
                                                                                                                                                                                                                tGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGCCCAATCTTACGTGGGTGATCCTGATGGTTATCGCGCTGGTAAGCGCAGGCATCTTCTTCATGCACAACGGCTTTTTGCTGTTCCGGGTTAACCCCTAG‑ACTCAGAACTTTTCCAGGAAAGTCGCCggggggg                                >  2:585297/1‑234 (MQ=255)
                                                                                                                                                                                                                     gctgctTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGCTTTTTGCTGTTCCGGCTTAACTCCTAC‑AGTCAGATCTTTTCCAGTGAAGTCTCCGGCGTGGCGTTa                           >  1:262299/1‑239 (MQ=255)
                                                                                                                                                                                                                     gctgctTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGGACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGCAAGCGTCGCCATCCTCTTCATGCACAACGGATTTTTGCGGTTCGGTCTTAACTCTCAC‑GGTCGGTACTTTTCAAGTGAAgcgcccgggtggccggta                           >  2:648320/1‑222 (MQ=255)
                                                                                                                                                                                                                          ttcctcccgGTTTACTATCTCACCTAAAAAACCCGCCTACGCAAACGCGTTTCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGCTTTTTGCTGTTCCGGCTTAACTCCTAC‑AGTCAGATCTTTTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACg                      <  1:732335/232‑1 (MQ=255)
                                                                                                                                                                                                                               ctcgGTTTACGAGTCCACCTACAAAACCCGCCTCCGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGCTTTTTGCTGTTCCGGCTTAACTCCTAC‑AGTCAGATCTTTTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGcttct                 <  1:487285/237‑1 (MQ=255)
                                                                                                                                                                                                                               cgcgGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGCTTTTTGCTGTTCCGGCTTAACTCCTAC‑AGTCAGATCTTTTCCAGTGCAGTCTCCGGCGGGGCGTTAAAACGctcct                 >  2:509523/1‑239 (MQ=255)
                                                                                                                                                                                                                                   gTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGCTTTTTGCTGTTCCGGCTTAACTCCTAC‑AGTCAGATCTTTTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGCTTCTTTTa             >  1:485691/1‑239 (MQ=255)
                                                                                                                                                                                                                                   gTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGATGGTAAGCGTCGGCATCTTCTTCATGCAAAACGGCTTTTTGCGGTTTGGGCTTAACTCCTCC‑CGTCAGATATTTTCCCTTGAAGTCTCCGGCGTGGCGGTAAAACGCTttttttt             >  2:603902/1‑238 (MQ=255)
                                                                                                                                                                                                                                              cACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGCTTTTTGCTGTTCCGGCTTAACTCCTAC‑AGTCAGATCTTTTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGCTTCTTTTACTTTTTCATc   >  1:812201/1‑238 (MQ=255)
                                                                                                                                                                                                                                              cACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGCTTTTTGCTGTTCCGGCTTAACTCCTAC‑AGTCAGATCTTTTCCAGTGAAGTCTCCGGCGTGGCGTTAAAAAGCTTCTTTTACtttttactc   >  2:1007515/1‑234 (MQ=255)
                                                                                                                                                                                                                                              cACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGCTTTTTGCTGTTCCGGCTTAACTCCTAC‑AGTCAGATCTTTTCCAGTGAAGTCTCCGGCGTGCGGTTAAAACGCTCTTTTTACTTTTTCATcc  >  2:214915/1‑239 (MQ=255)
                                                                                                                                                                                                                                              cACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGCTTTTTGCTGTTCCGGCTTAACTCCTAC‑AGTCAGACCTTTTCCAGTGAAGTCTCCGCCGTGGCGTTAAACCGCTTCTTTTACTTTTTCATc   >  2:471304/1‑238 (MQ=255)
                                                                                                                                                                                                                                              cACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGGGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGCTTTTTGCTGTTCCAGCTTAACTCCTAC‑AGTCAGATCTTTTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGCTTCTTTTACTTTTTCATc   >  1:637915/1‑238 (MQ=255)
                                                                                                                                                                                                                                              cACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGAGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGCTTTTTGCTGTTCCGGCTTAACTCCTAC‑AGTCAGATCTTTTCCATTGAAGTCTCCGGCGTGGCGTTAAAAAGCTTCTTTTACTTTTTCATc   >  1:679567/1‑238 (MQ=255)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                              
CTGTTTGTTGTCTGGCTGCTCTGCACGCTGTTTATTGCCACGCTGACCTGGTTTGAGTTTCGCCGTGTGCGCTTTAACTTCAATGTCTTCTTTT‑CATTGCTGTTTTTGCTCACCTTTTTCTTCGGCTTCCCGCTGACCAGCGTG‑CTGGTATTTCGCTTTGATGTTGGTGTCGCGCCGCCAGAAATCTTGTTGCAGGCGTTGCTTTCTGCGGGCTGCTTCTACGCGGTTTACTATGTCACCTACAAAACCCGCCTACGCAAACGCGTTGCTGATGTACCGCGCCGTCCGCTGTTTACCATGAACCGCGTGGAGACCAATCTTACGTGGGTGATCCTGATGGGTATCGCGCTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGCTTTTTGCTGTTCCGGCTTAACTCCTAC‑AGTCAGATCTTTTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGCTTCTTTTACTTTTTCATCC  >  NC_000913/3978624‑3979098

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A