Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F17 I0 R1
|
160 |
98.0 |
2214160 |
89.0% |
1970602 |
222.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,478,311 |
A→G |
18.3% |
E29G (GAG→GGG) |
ynbB → |
putative CDP‑diglyceride synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,478,311 | 0 | A | G | 18.3%
| 166.6
/ 6.4
| 73 | E29G (GAG→GGG) | ynbB | putative CDP‑diglyceride synthase |
| Reads supporting (aligned to +/- strand): ref base A (2/54); new base G (10/4); total (13/60) |
| Fisher's exact test for biased strand distribution p-value = 1.47e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGTACGCTTATATCTGTACATTTTCCGCGTTGGTTATATTGGGGTATTCCTCTTAACTATTTGCTTATCGGTTTTAATTGCTTTGAGCTGTTTCTG > NC_000913/1478074‑1478546
|
gttttAATTTTTGGTTTGTGGGTTTTGGCCGTTGCCATTTATCCAAAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTCTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑gag < 2:495580/236‑1 (MQ=255)
gcgTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑gag < 1:1685/239‑1 (MQ=255)
atatTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGaaaa < 1:228715/239‑1 (MQ=255)
ggTTTGTTGGGTTTGGCCTTTGCCATTTTTCCACAGTGGATGCAGTGGAATTATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGt < 2:520699/239‑1 (MQ=255)
tgtgGGGTCTGGCCGTTGCCTTTTTTCCACAGTTGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑gg < 2:691747/239‑1 (MQ=255)
tgGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑C‑GGTAGACAaggaggagggggt > 1:819031/1‑232 (MQ=255)
tgGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTAAC‑G‑CGGAGgaaaaagagggaggtg > 1:294894/1‑227 (MQ=255)
gtttGGCCGTTTCCATTTTTTCACTGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTCAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACa < 2:411709/235‑1 (MQ=255)
tCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCAATGGCGGATAAC‑a‑gaggagatatagggtggggagaaact > 1:581628/1‑216 (MQ=255)
cTGGGCTTTCCCATTTTTCCCAAGTGGTGGCCGTTGATTAATTTTTTTTGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TGTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTa < 2:1064324/239‑1 (MQ=255)
tgCCGTTTCTATTTATCCACGGTGGATGCAGTGGAATAGTCTTTTATGGGGCATTGCTTCAATTCTGCTTCCCTGGACTGCGATTAATCGTTGGCGGATTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACg < 2:870778/238‑1 (MQ=255)
ggCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACg < 2:818348/239‑1 (MQ=255)
ccGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTAGGGCGGGTACC‑T‑GGGGGAAAAgaggggggggggaccttgctga > 1:231983/1‑222 (MQ=255)
gCCATTTTTCCCAAGTGGTTGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTTTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGt < 2:627263/239‑1 (MQ=255)
ccATTTATCCACAGTGGATGCAGGTGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTa < 1:1025544/239‑1 (MQ=255)
gttttatcattatggtttgattGGAATTAGCTTTTATGGAGCAATACTTTAAATCTGCTTTACTGGACTGCGATTAATCGTTGTCGGAGTGTGCTGCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTGTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTAcc < 2:300780/218‑1 (MQ=255)
ttATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGaaa < 1:503700/206‑1 (MQ=255)
ttttccaatttgATGGAGTGGAATTATCTTGTGTGGGACATTGCTGCAATTTCGGTTCCATGGGATGGGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCAGGCAACACTTTTAGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑tgg < 2:394222/228‑1 (MQ=255)
caGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACA‑G‑GGGGCAAAAAGGGGGGG‑GGATGCATTACgatatgttccactggggggg > 1:1062832/1‑220 (MQ=255)
caGGGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGt < 1:326217/211‑1 (MQ=255)
aGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTTCC‑G‑GCGAGCAAAGAGGGGGA‑GGGTACAATTAGTAGTACTACCTTGGTGGGGc > 1:394222/1‑239 (MQ=255)
gATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTTCCGG‑GGGGGAAAAGGGGGGGG‑GGTT‑CATTAATGATTTGTTCC‑TGgggggggggcg > 1:957618/1‑233 (MQ=255)
ttgAATAATCTTTTGTGGAGCCTTGATTCAATTCTTCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGGGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTg < 1:875418/236‑1 (MQ=255)
tGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTTCC‑C‑GGGGGAAAAAGGGGGGG‑GGGTACAATACGTATTCGTTAC‑TCGGGGGGGGTCGCCGTTTGt > 1:961958/1‑239 (MQ=255)
ttATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGCTTAATCGTTGTCGGAGTGTGCTTCTTCTGAGCGCTGAAATATAATTCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTCA‑TTTTAGCAACGCTGATCAACCGTTTTCTGCTATGGCGGTTACT‑GCGGGAGGAAA‑CGGGAGA‑GGTTCTATGTCGTATTCTTCCC‑TGGTGGGGGGTCGTGCGTTGtttttttctcgtg > 1:631587/1‑231 (MQ=255)
gAGCATTGCTTCAATTCTGCATCTCTGGACTGCTATTAATCGGTGTCGGAGTGTGCATCTTATGAGCGATGAAATATAATGCTGGAAAAAGCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTc < 1:190232/239‑1 (MQ=255)
ttcatttttttttCTCGGGACTTCGATTAAGCGTTGGCGGGGTGTGCTTCTTATGAGCGCTGAAATTAGATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTGTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACg < 2:724062/228‑1 (MQ=255)
ttCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGGCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACg < 1:322982/239‑1 (MQ=255)
cAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTTCCTG‑GGGGGAAAAGGGGGTGG‑GGTTACTTTATAT‑TTTTTACC‑TGGTGGGGGTGGGTCATTTGTTTTTTTATGGGTGAttttgtggccc > 1:720968/1‑228 (MQ=255)
tttgtttCTCTGGACTTCGATTAATCGTTGTCGGGGTGGGGTTCTGTTGAGCGCTGAAATATAATGCTGGAAAAATCTCGGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGAt < 2:562384/234‑1 (MQ=255)
cTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTTGC‑G‑GAGGGAAAAGGGGGGGAGGGTTAC‑TTTCTATTTTGTAAC‑TGGTGGGGCGTCGTCATTTTTTTTTTATT‑GGTATTTTTAggatcaagacagagggag > 2:89698/1‑223 (MQ=255)
ctctGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGt < 1:32038/211‑1 (MQ=255)
gggttAATGGTTTTGGGGGTGTGGTTTTTATGAGCGGTGAAATATAATGCTGGAAAAATCTCTGGCAACCTTTTTCGCGTTGTTAA‑TTGTAGCAACGCTGATAAAGCGGTTTCTGCGATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTTA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTg < 2:535321/236‑1 (MQ=255)
ttAATCGTTGGCGGAGGTTGCTTCTTATGGGCGCTGAAATATAATGCTGGAAAAAGCTCTGGCAACGCTTTGCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTgcg < 1:546690/238‑1 (MQ=255)
attggtataagagaccgtcttATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGAt < 1:888745/221‑1 (MQ=255)
gTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAggggg < 1:757254/132‑1 (MQ=255)
gTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAggggg > 2:757254/1‑132 (MQ=255)
ttttcttttttttgtgcgttaaaTTTAATGCTGGAAAAATCTCTGGCAACTCTTTTCTCGGTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGc < 2:720968/219‑1 (MQ=255)
gCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCAt < 1:359681/238‑1 (MQ=255)
gCTTCGTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCAt < 1:330989/238‑1 (MQ=255)
ttcttATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACg < 1:11742/193‑1 (MQ=255)
ttcttATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACGTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAggggg < 1:353972/120‑1 (MQ=255)
tttATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGTTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGaaa < 2:231702/238‑1 (MQ=255)
gcgcTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTAAC‑G‑GGGAGAAAAGGGGGTGA‑GGGTACATTACGGATTCGCACC‑TGGTGGGGCGTCGTGCTTTGTTTTTTTAT‑TGGGATTTTAGGGCCCCGCTGGGTGAGGTTGACGGTTTTTTTGTTGTTAAGGTTTTTGGGATTGTACTAatatg > 1:195581/1‑238 (MQ=255)
ggtGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGt < 1:455524/237‑1 (MQ=255)
gcTGTAATTTAATGCTGTAAAAATCTCTGTGATATTTTTTCGCGTTGTTAA‑TTTTAGCAACGCTTATAAACCTTTTTCTGCTAAGTCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTTCGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGt < 2:994724/239‑1 (MQ=255)
gcTGAAATATAATTTTGGAAAAATCTTTGGCAACACGTGTTGGGTTTGTAA‑TTTTAGCAACGCTGATAAGCCTTTTTATTCCATGGCGGTTACC‑T‑GAGAGAAGAGGGGGTGA‑GATTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTg < 2:819031/238‑1 (MQ=255)
gcTGAAAATTCATGCTGGAAAAATCTCTGGCCTCTCTTTCCGCGTTGTTAA‑TTTGAGTCATGTTGAGAAACCTTGTTCTGATATGGCGGTTACC‑G‑GTGAGAAAAGGGGTTGA‑GTTTACATTACGTATTCGTACC‑TGGTTGGGCATCGTCATTTGTTTGTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTCTTCTGGCATTGAAAGAATATTGt < 2:960876/239‑1 (MQ=255)
gtGAAATTTATTGGTGGAAAAATTTCTGGCTACTCTTTTCGGGTTGTTAA‑TGTTAGCAACGTTGATAAACCGTTTTCTGCTATGGCTGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGt < 2:141547/237‑1 (MQ=255)
gtGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGGTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTGCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGt < 1:772585/237‑1 (MQ=255)
cttaaaTTTAATGCTGGAAAAATCTCTGGCAACACTTTTCTGGGTGTTAA‑TTTTAGCAAGGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGt < 1:475298/235‑1 (MQ=255)
cTGAAATTTTATTCTGGAAAAATCTCTGGCAATCCTTTTCGCTTTTGTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTTCTATGGCGGTTACC‑G‑GGGAGAAAAGGGTGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGt < 2:195581/238‑1 (MQ=255)
tGAAATATAATGCTGGAAAAATCTCTGGCAACCCTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATa < 1:544206/210‑1 (MQ=255)
tGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGAt < 1:371303/209‑1 (MQ=255)
aattttattgtGGAAAAATTTCTGGTAACGCTTTTTTCTTTGTTAA‑TTTGAGCAACGCTGATAAACCGTTTACTTCTATGGCGGTTACC‑G‑TAGAGAAAAGGGGGTGA‑GGTTTCATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGTACGCt < 2:391664/229‑1 (MQ=255)
aatttatatttGGAAAAATTTCTGGCAACCTTTTTAGCGTTTTTAA‑TTTTAGCAACGCTGATAATCCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGTGGGTGA‑GGTTACATTACTTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGTACGCt < 2:581628/229‑1 (MQ=255)
aaTATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGTACGCt < 1:86502/239‑1 (MQ=255)
tataATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTc < 1:626374/170‑1 (MQ=255)
tataATGCCGGAAAAATCTCTGGCAACTCTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGt < 1:47124/232‑1 (MQ=255)
aTCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GGGGGAAAAAGGGGTGA‑GGGTAAATTTAGTATTTGTTAC‑TCGGGGGGCATCGTCATTTTTTTTTTTAA‑GGGGAGTTTAGGTGCCCCCCGGGTGGAGTTTACGGTTTTTTTGCTGGTAAGTTTTTTTGCATTGTAAGAAAATTTTTACTTTTTATTTGTACAtttt > 1:969328/1‑238 (MQ=255)
ctggtcgtttttttCGTGTTTTTTA‑TTTTGGGAACGCTTATAGGCCGTTTTCTGTGTTGGCGGTTTCT‑G‑GGTAACAAAGTGGGTTA‑TGTTACATTACGTTTTCGTACC‑TGGTGGGCGCTCGTCGTTTGTTTTTTTAT‑GGTTATTACGGGTCCACGCTGGATGACTTTGACCTTTTTTGCTCTGATAAGTTTTCTGGCATTGAAAGAATATTGTACTCTTATATCTGTTCATTATCcgcg < 2:977956/229‑1 (MQ=255)
cTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAATCCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGTACGCTTATATCTGTACATTTTCCGCGTTGGTtata < 1:372387/239‑1 (MQ=255)
cTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGTACGCTTATATCTGTACATTTTCCGCGTTGGTtata < 1:704622/239‑1 (MQ=255)
ttttCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGttttt < 1:37113/123‑1 (MQ=255)
ttgttAA‑TTGTAACAACGGTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGTACGCTTATATCTGTACATTTTCCGCGTTGGTTATATTGGGGTa < 1:857986/238‑1 (MQ=255)
a‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGTACGCTTATATCTGTACATTTTCCGCGTTGGTTATATTGGGGTATTCctct < 1:89698/239‑1 (MQ=255)
ttttAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGTACACTTATATCTGTACATTTTCCGCGTTGGTTATATTGGGGTATTCCTCtt < 1:956696/239‑1 (MQ=255)
ttttCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGt < 1:967086/58‑1 (MQ=255)
ttttTGCTTTGGGGGTTACC‑G‑GAAAGAAAAGGGGGGTA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGAATCGTCATTTGTTTTTCAAT‑GGTGAGTTCAGGTCCACTCTGGATGACGTTGACTTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGTACGCTTATATCTGTACATTTTCCGCGTTGGTTATATTGGGGTATTCCTCTTAACTATTTGCTTATCGGTTTTaa < 2:1093797/239‑1 (MQ=255)
tttCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGTACGCTTATATCTGTACATTTTCCGCGTTGGTTATATTGGGGTATTCCTCTTAACTATTTGCTTATCGGTTTTaa < 1:1056528/239‑1 (MQ=255)
gCTATGGCGGGTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGTACGCTTATATCTGTACATTTTCCGCGTTGGTTATATTGGGGTATTCCTCTTAACTATTTGCTTATCGGTTTTAATTGCt < 1:748218/239‑1 (MQ=255)
tggggTTTCT‑G‑GGGAGAAAAGGGGGTTG‑TGTTTAATTACGTATTCGTACC‑TGGTGGGGACTCGTCATTTGTTTTTAAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGTACGCTTATATCTGTACATTTTCCGCGTTGGTTATATTGGGGTATTCCTCTTAACTATTTGCTTATCGGTTTTAATTGCTTTGAg < 2:294894/236‑1 (MQ=255)
ggCGTTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTCCGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGTACGCTTATATCTGTACATTTTCCGCGTTGGTTATATTGGGGTATTCCTCTTAACTATTTGCTTATCGGTTTTAATTGCTTTGAg < 2:957618/239‑1 (MQ=255)
ctgTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGTACGCTTATATCTGTACATTTTCCGCGTTGGTTATATTGGGGTATTCCTCTTAACTATTTGCTTATCGGTTTTAATTGCTTTGAGc < 1:587502/236‑1 (MQ=255)
cc‑G‑GTGAGAAAAGGGGGTGT‑GGTTATATTACTTATTCGTGCC‑TGGGGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATTACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGTACGCTTATATCTGTACATTTTCCGCGTTGGTTATATTGGGGTATTCCTCTTAACTATTTGCTTATCGGTTTTAATTGCTTTGAGCTGTTTCt < 2:647244/239‑1 (MQ=255)
c‑G‑GGGATAAATGGGGTTTG‑GGTTTCATTACGTATTCGTTCC‑TGGTGGGGAATCGTCTGTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGGTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGTACGCTTATATCTGTACATTTTCCGCGTTGGTTATATTGGGGTATTCCTCTTAACTATTTGCTTATCGGTTTTAATTGCTTTGAGCTGTTTCTg < 2:330267/239‑1 (MQ=255)
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GCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAA‑TTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACC‑G‑GAGAGAAAAGGGGGTGA‑GGTTACATTACGTATTCGTACC‑TGGTGGGGCATCGTCATTTGTTTTTCAAT‑GGTGATTTCAGGTCCACGCTGGATGACGTTGACGTTTTTTGCGCTGATAAGTTTTCTGGCATTGAAAGAATATTGTACGCTTATATCTGTACATTTTCCGCGTTGGTTATATTGGGGTATTCCTCTTAACTATTTGCTTATCGGTTTTAATTGCTTTGAGCTGTTTCTG > NC_000913/1478074‑1478546
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
