Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F17 I0 R1 160 98.0 2214160 89.0% 1970602 222.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,300,841 A→G 12.6% L64P (CTC→CCC)  mdtP ← outer membrane factor of efflux pump

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,300,8410AG12.6% 348.5 / 6.1 142L64P (CTC→CCC) mdtPouter membrane factor of efflux pump
Reads supporting (aligned to +/- strand):  ref base A (56/64);  new base G (16/5);  total (73/69)
Fisher's exact test for biased strand distribution p-value = 1.70e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 143 total aligned reads displayed.

CGTATAGTACGGCCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGTGGCGGGCGTTAATGC  >  NC_000913/4300603‑4301072
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                        
cGTATAGTACGGCCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTTCCCCAGTTTCGCTTCGGCCAGGGTGTGTGGACCACTTAGCGTCCGTTTGATCA‑CGCGATCCAGCTCGGGGGCATTGa                                                                                                                                                                                                                                          >  1:50473/1‑239 (MQ=255)
          ggCCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAAAGCTGCGACCTGTAATTGTGAACCGGCGTCTAACAAATAGGCCTGGGGCTGCGCTTTTTCTTCACGCAGTTTCGCCTCGGGCAGGGTGTGGTAACCACTTAGCGTCCGCTGGAACAGGCC‑AACCCGCCGCGGGGCAGTGGGGTG‑tttgc                                                                                                                                                                                                                                >  2:571259/1‑236 (MQ=255)
            cccGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGAATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCACTTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCCCCGGTTCGCTTCTGCGAGGGGGTGTGAACCACTTATCGTCCCTTGGGTCAGCGC‑ATCCAGCTGCGGGGCATTGGGGTG‑TTTcccac                                                                                                                                                                                                                             >  2:886596/1‑236 (MQ=255)
                         aGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGGGTGTGAACCACTTAGCGTCCGTTGGGTCCGCGC‑ATCCAACTGGGGGGCAATTGGTTG‑TTTCCCCCCCTGCGcccggg                                                                                                                                                                                                                 >  2:505391/1‑234 (MQ=255)
                          gTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGGGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCgg                                                                                                                                                                                                                >  1:1085798/1‑238 (MQ=255)
                          gTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCCCTTCGGCTAGGGGGGGTGAACCACTTAGCGACCGTTGGGTCACCGC‑ATCCCGCTGCGGGTCATTTGGTTG‑TTTCCACCACTGCGCCTGCgg                                                                                                                                                                                                                >  1:114694/1‑238 (MQ=255)
                          gTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGATGCGACCTGCAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGGTTCGCTTCGGCGAGGGTGTGTGGACCACTTAGGCGCCGTTGGGTCAGCGC‑ACCCCGCCGAGTGGAAATGAGTTGTTTTccaccatggtcctgggg                                                                                                                                                                                                                 >  2:364531/1‑227 (MQ=255)
                           tGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTGACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACCGCGCTTTTTCTTCCCGCAGTTTCCCTTCGGCGGGGGGGGGTGAACCCCTTAGCGTCCGTTGGACTCGCCC‑ATCCAGCTGCGGGTCATTGGGGTT‑TTTccaccaacagccccgcggca                                                                                                                                                                                                              >  2:402987/1‑225 (MQ=255)
                           tGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGGCCTCTAATTGTGAACCGGCCTCTAACCACTCGGCCTGGGCCTGCGCTTTTTGTTCCCGCAGTTTCGCTTCTGCGAGGGTGTGTGAACCACTTAGAGTCCGTTGGATCAGTGC‑CTCCCACGTCGGGGCATTGGGTTT‑TTTTGACCACtcgcgctgcgcga                                                                                                                                                                                                              >  2:769359/1‑227 (MQ=255)
                           tGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGGGTTG‑TTTCCACCCCTGCGCCTGCGGc                                                                                                                                                                                                               >  1:736701/1‑238 (MQ=255)
                           tGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGATGGTCATTGAGTTG‑ATTCCACCACTGCGCCTGCGGcc                                                                                                                                                                                                              >  1:599559/1‑239 (MQ=255)
                           tGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCACCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGcc                                                                                                                                                                                                              >  1:1100181/1‑239 (MQ=255)
                           tGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGCGTGTGAACCACTTAGCGTCCGTTGGATCAGCGG‑ATCCAGCTGCGGGTCATTGGGTTG‑TTTCAACCACTGCGCCTGCGGcc                                                                                                                                                                                                              >  1:197201/1‑239 (MQ=255)
                                   cttCCATTGAATAAGGGCTTAAAAAGCCTGTCGCCGAGACACGTTGGCGGTTGAGCACCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGTCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAg                                                                                                                                                                                                      <  2:796199/237‑1 (MQ=255)
                                     tCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGCCCTGTACTTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGGTTCGCTTCGTCGAGGGTGTGTGAACCACTTAACGTCCCTTGGGTCACCCC‑GTCCGCCTGGGGGGCATTGGGTTG‑TTTTCCCCACGGGGcccccgcgccagcgggggc                                                                                                                                                                                                    >  2:1005368/1‑222 (MQ=255)
                                     tCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGGGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGGTG‑TTTCCACCACATCGCCTGCGGACAGCCggggat                                                                                                                                                                                                    >  1:658201/1‑235 (MQ=255)
                                     tCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCCCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGTTCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTACGGCAAGCCGGa                                                                                                                                                                                                       >  1:314777/1‑236 (MQ=255)
                                       cATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAAGCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTgg                                                                                                                                                                                                  <  1:846789/239‑1 (MQ=255)
                                        tttGAAAAAGGGTTTAAAAAGCCGTCCGCCGAGACACGTTGGAGGTTGAGCATCCCTAACGTTGCGCCCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑CTCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGc                                                                                                                                                                                                 <  2:691908/238‑1 (MQ=255)
                                        atttaaaaggtgCTTAAAATGCCGTTCGCCGAGTAACGGTGGCGGTTGACCATCCCTAACCCTGCGGCCTGTAAATGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGc                                                                                                                                                                                                 <  2:114694/228‑1 (MQ=255)
                                        aTTGAATAAGGGCTTAAAAAGCCTTTCGCCGAGACACGTTGGCGGTTGCGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGc                                                                                                                                                                                                 <  1:1011386/239‑1 (MQ=255)
                                        aTTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGc                                                                                                                                                                                                 <  1:284582/239‑1 (MQ=255)
                                           gAATAAGGTCTTAAAAAGCCGTTCGGCGAGACACGTTGGCGGTTGGGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAAGCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAg                                                                                                                                                                                              <  1:518515/239‑1 (MQ=255)
                                           gAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAg                                                                                                                                                                                              <  1:368797/239‑1 (MQ=255)
                                                aGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCCTTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCCAGATGaa                                                                                                                                                                                         >  1:298338/1‑239 (MQ=255)
                                                 gggCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGGCATTGGGTTG‑TTTCCCCCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAat                                                                                                                                                                                        >  1:1033469/1‑239 (MQ=255)
                                                     ttcaaaggcctttgccctagtcgcGTGGGCGGTTGGGCACCCCTAACGCTGGGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCGGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTTGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATAtcg                                                                                                                                                                                    <  2:687588/216‑1 (MQ=255)
                                                      tAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCCACCTGTCATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCCGATTCGCTTCGCCGAGCGTGTGTGAAACAATTAACGTCCGTTGGCTCAGCGC‑CTCCAGCTGCCGGGCATTAGGTTG‑TTTCCACCCCTGCCGCCGCGGCCAGCCGGAACCGGCAAAATGAatgacac                                                                                                                                                                                   >  2:178554/1‑234 (MQ=255)
                                                         aaaGCCGTTCGCCGAGTCCCGTTGGCGGTTAAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCgg                                                                                                                                                                                <  1:364531/239‑1 (MQ=255)
                                                              ctttCGCCGGGTCCCGTTGGCGGTTGAGCATCCCTAACCTGGCGCCCTTTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTTGGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGt                                                                                                                                                                           <  2:1100181/237‑1 (MQ=255)
                                                                   gCCGAGCAACGTGGGCGGTGTAGCCGCCCTAACTGCGCGACCTTTAATTGTGTACCGGCATCTAACAAACCGGCCTGGTACTGCGTTTTTTCTGCCCGCAGTTTCGCTTCGGCTAGGGTGTGTGAACCCCTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGACTGCGGCCGGCCGGTGCTGGCAAGATAAACTGCGGCGGCTAGTTTGAt                                                                                                                                                                      <  2:1033469/239‑1 (MQ=255)
                                                                         gcacGTTGGGGGTTGGGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGtt                                                                                                                                                                 <  1:31917/237‑1 (MQ=255)
                                                                                    gTTTAGCATCCCTAACGCTGGGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCGTCCCGCAGTTTCGCTTCGGCGAGGGTGTGGGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGc                                                                                                                                                      <  1:519394/238‑1 (MQ=255)
                                                                                       gAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCTCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCCGCGC‑ATCCAGCTGCGGGTCATTGAGGTG‑TTTCCACCACTGCGCCTGCGGCCCGCCGGTGCTGGTAAGTGGAATAACGGCGGCCAGTTTGATTTGTTCCGGttggggaggtt                                                                                                                                                  >  2:941432/1‑230 (MQ=255)
                                                                                            tCCCTAACGCGGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTtgatg                                                                                                                                              <  1:505391/238‑1 (MQ=255)
                                                                                                gaaCGCTGTGGCCTTGTATTTTGAACCGGCTTCAAACAAATCGGGCTGGGACAGCGCCTTTTCGTCCCGGAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGGGTCCGGTGGATCAGGGA‑ATCCAGGTGCGGGTCATTGAGTTG‑TATCCTCCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTg                                                                                                                                         <  2:314777/238‑1 (MQ=255)
                                                                                                  aCGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCTCCACTGCGCCTGCGCCCACCCGCCGCTGGCCCGCTGCATATCGTCGACCAGGTTGTTTTTTTCCGGTTTGTGCTGTTTTTTAGGTGcg                                                                                                                                       >  1:481044/1‑238 (MQ=255)
                                                                                                   cGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAAGCGGCCGGGGACTGCCCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAg                                                                                                                                      <  1:571259/239‑1 (MQ=255)
                                                                                                      ttgggcctggtaTTGGGAACCGGCATCTAACAAATCGGCCTGGGCCTGCTCTTTTTCTTCCCGCAGTTTCGGTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAAt                                                                                                                                   <  2:943271/228‑1 (MQ=255)
                                                                                                      tGCGACCTGTAATTGGGAACCGGCATCGAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAAt                                                                                                                                   <  1:942122/239‑1 (MQ=255)
                                                                                                       gCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGTTGAggggaggaa                                                                                                                                    >  1:906905/1‑230 (MQ=255)
                                                                                                        cGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCAGGTTTGGACTGTCGATGAggggaggaat                                                                                                                                   >  1:660982/1‑229 (MQ=255)
                                                                                                        cGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGAGGAATATCGTCGGCCCGTTTGATTTGTTCCGGTTTGGGCGGTTGGTGAGGGGcgaaaa                                                                                                                                   >  2:618920/1‑232 (MQ=255)
                                                                                                        cGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGGCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGATTGATTTGTTCCGGTTTGGGCTGTTGGTGAGGGGCAGaaa                                                                                                                                   >  2:881959/1‑236 (MQ=255)
                                                                                                         gACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGc                                                                                                                                                                                                 >  2:50692/1‑174 (MQ=255)
                                                                                                         gACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGc                                                                                                                                                                                                 <  1:50692/174‑1 (MQ=255)
                                                                                                                        aCCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGGTAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGcac                                                                                                                 <  1:126399/239‑1 (MQ=255)
                                                                                                                         ccGGGATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGcac                                                                                                                 <  1:886596/238‑1 (MQ=255)
                                                                                                                             cATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATTAGGTGCAGAATCCTTACGTACCAGGGCACACCCg                                                                                                            >  1:562159/1‑239 (MQ=255)
                                                                                                                                  aaCAAATCGGCCTGGGAATGCGATTTTTCTTCCAGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAAt                                                                                                       <  1:643804/239‑1 (MQ=255)
                                                                                                                                      caTCCGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTACCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGCGCTGGCGAGGGGAATATCGTCGGCCAGTTTGGTTTGTTCCGGTTTGGGCTGTTGGTGAGGTGCAGAATCCTTACTTACCAGGGCCCAGCCGGAAAACaac                                                                                                   >  2:727133/2‑237 (MQ=255)
                                                                                                                                          ggcctgggcttgtctttttttttCCCGGAGTTGCGTTTCGGCGGGGGTGTGTGAACCACTTAGCGCCCGTTGGATCAGCGC‑ATCCGGCTGGGGGTCATTGAGTTG‑TTTCCCCCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGcgtcg                                                                                               <  2:1085798/224‑1 (MQ=255)
                                                                                                                                           gCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGTGGCAGAATCCTAACGTACCAGGGCACAGCCGGAAATCAGcgtcgg                                                                                              >  1:20998/1‑238 (MQ=255)
                                                                                                                                            ccTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTtgatga                                                                                                                                             <  1:652657/191‑1 (MQ=255)
                                                                                                                                            ccTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGcgtcgt                                                                                              >  1:296947/1‑238 (MQ=255)
                                                                                                                                             gttggtcTGCGTTTTTTCCTCCCGCGGTTTCGCTTCGGCGCGGGTGTGTTAACCACTTATCTACCGTTGGGTCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGtg                                                                                             <  2:481405/232‑1 (MQ=255)
                                                                                                                                             cTGGGACTGCGCTTTGTCTTCCCGGAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGtg                                                                                             <  1:727133/238‑1 (MQ=255)
                                                                                                                                                      ctcTTTCTCTCCCCGCAGTTTCGTTTCGGCGAGGTTGTGTGAACCACTTAGCGTCGTTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCCCCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGaa                                                                                   <  2:1055093/237‑1 (MQ=255)
                                                                                                                                                      cgcTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTTTTCCGGTTTGAGCTGTTGATGAGGGGCCGAAACCTTACGTAACAGGGACAAGCGGGAAAACaagggcggggtccccgaaa                                                                                   >  2:687666/1‑221 (MQ=255)
                                                                                                                                                      cgcTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCATCGGCGTGCTGCCGAGaa                                                                                   >  1:546431/1‑239 (MQ=255)
                                                                                                                                                      cgcTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGGGaa                                                                                   >  1:1028229/1‑239 (MQ=255)
                                                                                                                                                      cgcTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGGTTGATTTGTTCCGGTTTGGGCTGTTGGTGAGGTGCAGGATCCTTACGTACCAGGGCACAGCGGGAAAATAGCGTCGGGCTGCCGAGaa                                                                                   >  2:944465/1‑239 (MQ=255)
                                                                                                                                                              cttcCCGCAGTTTCGTGTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑GTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGcac                                                                           <  1:633959/239‑1 (MQ=255)
                                                                                                                                                                tcCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCACCGTCGTGCTGCCGGGAATGCTGcaca                                                                          >  1:886553/1‑238 (MQ=255)
                                                                                                                                                                tcCCGCAGTTTCGCTTCGGCGAGGGGGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTCCGGCCAGCCGGAGCTGGCAGGACGAATACCGTCGGCCAGTTTGCTTTGTTCCGGTTTGAGCGGTTGATGAGGTGCAGCATCCTTCGGTCCCAGGGCACAGCCGGGAACAAGCGACGGGCGTCCGAGAAggcggcccga                                                                         >  2:758465/1‑235 (MQ=255)
                                                                                                                                                                            gcggcggggggggggggtgAACCCCTTGGGGTCCGTGGGGTGCGGGG‑AGACAGCTGCGGGTCGTTGATTTG‑TTTCCACCCCGGCGGCGGCGGCCGGCCGGAGCTGGCAAGATGAAGATCGTCGGCCAGTTTGATTTGTTCCGGTTGGAGCTGGTGAGGAGGTGCAGAAACCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGa                                                             <  2:481044/223‑1 (MQ=255)
                                                                                                                                                                            gCTGCGGAGAGGGTGTGTAAACCACTTAGCGTCCGTTGGATCAGCCC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGAAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGa                                                             <  1:769359/239‑1 (MQ=255)
                                                                                                                                                                                 ggggAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGGCC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGtt                                                        <  1:444752/236‑1 (MQ=255)
                                                                                                                                                                                 ggCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGtt                                                        <  1:687666/239‑1 (MQ=255)
                                                                                                                                                                                 ggCGAGGGTGTGTGAACCACTTAGCCTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGtt                                                        <  1:618920/239‑1 (MQ=255)
                                                                                                                                                                                    gggggttgtttacccatttacgttCCGGTGGATCAGCGC‑ATCCAGCCGGGGGTCATTTGGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGGGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGa                                                      <  2:140371/215‑1 (MQ=255)
                                                                                                                                                                                    gggggTTTGTGAACCGCTTAGCTGCCCTGTGATCAGCGC‑ATCCGGCGGGGGGTCATTGAGTTG‑TTTCCCCCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATTTCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGa                                                      <  2:859860/236‑1 (MQ=255)
                                                                                                                                                                                        gtgtgtGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGAt                                                  <  1:941432/238‑1 (MQ=255)
                                                                                                                                                                                           ttgtatccgcttggtgttggTTGGATCAGCGC‑TACCGGGTGCGGGTCATTGGTTTG‑TTGCCCCCACTGCCGCTGCGGGCGTGTGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGag                                              <  2:178656/220‑2 (MQ=255)
                                                                                                                                                                                           tgtgAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGTGGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGGGCTGTTGATGAGGTGCGGGATCCTTCCGTACAAGGGCATAGACGGAAATCAACATCGGGCTGCCGGGACTGCGGCCAAACACCAGACGGGacatatgcagagtgat                                              >  2:743631/1‑224 (MQ=255)
                                                                                                                                                                                           tgtgAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGCTTTGTTCCGGt                                                                                                                                                            >  1:691487/1‑129 (MQ=255)
                                                                                                                                                                                           tgtgAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCttc                                                                                                                              >  2:1071123/1‑158 (MQ=255)
                                                                                                                                                                                           tgtgAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTa                                                                                                                              <  1:1071123/159‑1 (MQ=255)
                                                                                                                                                                                           tgtgAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGCACATTGACGATTGa                                               >  1:583595/1‑238 (MQ=255)
                                                                                                                                                                                                 ccccttgggcgccggtgggaccgcgc‑ATCCGGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGTATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGc                                        <  1:826079/217‑1 (MQ=255)
                                                                                                                                                                                                 ccACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGc                                        >  1:278140/1‑239 (MQ=255)
                                                                                                                                                                                                    cTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGCCCAGCCGGAGCTGGCGAGTTGAATATCGTCGGCCAGTTTGCTTTGTTCCGGTTTGAGCTGTTGATGAGGTGCCGAATCCTTACGTACCTGGGCACAGCCGGGAATCAGCGGCGTGCTGCCGAGAGTACTGCCCACAAGCCACCGTTAAAGTCGACgttgtggccacgcgg                                      >  2:495493/1‑224 (MQ=255)
                                                                                                                                                                                                     ttaggcgccGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTgg                                    <  1:255226/232‑1 (MQ=255)
                                                                                                                                                                                                     ttAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGCGTTG‑TTTCCACCACTGCGCCTGCGGCCCGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCCACGTCGTGCTGCCGAGAATGCTGCACACAAGCAGACGGGAAAGGTGACGAGTAATCaatccggg                                     >  2:316924/1‑231 (MQ=255)
                                                                                                                                                                                                     ttAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTTCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTgg                                    <  1:578190/239‑1 (MQ=255)
                                                                                                                                                                                                     ttAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGcg                                                                                                  <  2:664694/177‑1 (MQ=255)
                                                                                                                                                                                                     agggacagcGTTGGATCGGCGC‑ACCCGGGTGCGGGTCATTGGGTTG‑TTTCCCCCACCGCGCCTTGGGCCAGCCGGAGCTGGCAAGATTAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTgg                                    <  2:818400/231‑1 (MQ=255)
                                                                                                                                                                                                          gTCCGTTGGATCAGCGC‑ATCCAGCTGGGGGTCATTGGGTTG‑TTTCCACCCCTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCt                               <  1:640840/239‑1 (MQ=255)
                                                                                                                                                                                                           tCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTACGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCt                               <  1:335405/238‑1 (MQ=255)
                                                                                                                                                                                                              gTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTCCACAACAGCAGACGGGAAAGTTGACGATTGATCATTGCGTGGGCCCTtgg                            >  2:1095526/1‑237 (MQ=255)
                                                                                                                                                                                                               ttGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAAtg                                                                                 >  1:10603/1‑184 (MQ=255)
                                                                                                                                                                                                               ttGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAAtg                                                                                 <  2:10603/184‑1 (MQ=255)
                                                                                                                                                                                                               ttGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGGGCAAGTTGACGCTTGATAATTGCGTGGCTCCTtgtg                           >  1:442236/1‑238 (MQ=255)
                                                                                                                                                                                                                     cAGGGC‑ATCCGGGTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTc                    <  1:483097/239‑1 (MQ=255)
                                                                                                                                                                                                                             tCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGGTCATTGCTTGGCGCCTTGTGCCTGTTCCGGggcg             >  1:251586/1‑239 (MQ=255)
                                                                                                                                                                                                                                 gCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGCTGATGTGCAGAATCCATACGTAACAGGGCACAGCCGGAAATCCGCGTCTCGCTCCCGGGAATTCTGCACACCAGCAAACCTGAAAGTTCACGATGGACCATTGTGTGGCCCCATGGGCGCGTTCcg‑ggcgggggg        >  2:1092923/1‑236 (MQ=255)
                                                                                                                                                                                                                                       ggTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGcac                                                                                                                 >  1:1085468/1‑129 (MQ=255)
                                                                                                                                                                                                                                       ggTCATAGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGcac                                                                                                                 <  2:1085468/129‑1 (MQ=255)
                                                                                                                                                                                                                                        gTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGTggcg             <  1:599421/228‑1 (MQ=255)
                                                                                                                                                                                                                                         gcATTGAGTTG‑TTTCCCCCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGTGGCGGGCGTTAATGc  <  1:402987/237‑1 (MQ=255)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                        
CGTATAGTACGGCCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGC‑ATCCAGCTGCGGGTCATTGAGTTG‑TTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGTGGCGGGCGTTAATGC  >  NC_000913/4300603‑4301072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A