Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F18 I0 R1 274 115.5 2655328 86.7% 2302169 226.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,300,841 A→G 6.9% L64P (CTC→CCC)  mdtP ← outer membrane factor of efflux pump

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,300,8410AG 6.9% 379.7 / 2.1 139L64P (CTC→CCC) mdtPouter membrane factor of efflux pump
Reads supporting (aligned to +/- strand):  ref base A (61/65);  new base G (9/2);  total (71/68)
Fisher's exact test for biased strand distribution p-value = 5.56e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 140 total aligned reads displayed.

GTATAGTACGGCCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGTGGCGGGCGTTAATGCCGGGG  >  NC_000913/4300604‑4301077
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                             
ttatgttACGGCCGCTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGGTCGACGAGACGCCTTGGCGGTGGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAAGCGGCCTGGGACTGCGCTTTTTCGTCCCGCAGTTTCGCGTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAg                                                                                                                                                                                                                                              <  1:1281247/233‑1 (MQ=255)
  ttgggccGGCCCTGCCATTCCCAGGCGTGGGGCTTCCTTTGAAAAAGGGCTTAAAAAGCCGTTCGCCGAGACGCGTTTGCGGTTGAGCCT‑CCCTAACGCGGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAgtt                                                                                                                                                                                                                                            <  1:207002/233‑1 (MQ=255)
   taGTTCGGCCCGTCCATTCCCAGGGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAgtt                                                                                                                                                                                                                                            <  2:524835/238‑1 (MQ=255)
   taGTCCGGCCCGGCCCTACCCTGGGCGGGCGCATCGATTGAATAAGGGCTGAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAgtt                                                                                                                                                                                                                                            <  1:984643/238‑1 (MQ=255)
     gTACGGCCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGGGTTTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGCCATTGAgttgtt                                                                                                                                                                                                                                         >  2:131962/1‑239 (MQ=255)
      tACGGCCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTTGGACTGCGCTTTTTCTTCCCCCCGCTTCCCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGGCATTGTGTTGttt                                                                                                                                                                                                                                        >  2:1284077/1‑239 (MQ=255)
           cccGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTTTGAACCGGCATCCAACAAATCGTCCTTGGCCTGCGCTTTTTTTTCCCGCAGTTTCGCTTCTGAGAGGGTGGGTGGACCCCTTTGCGTCCGGTGGACCTACGCGTCCCCCGGCGGGGCATTTGTTTGTTTccac                                                                                                                                                                                                                                    >  1:900886/1‑238 (MQ=255)
           cccGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGGTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGGGTGTGTACCACTTAGCGTCCGTTGGGTCAGCGCATCCAGCTTCGGGTCATTGAGTTGTTTctcc                                                                                                                                                                                                                                    >  2:1127491/1‑235 (MQ=255)
           cccGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAACTGCGGGTCATTGAGTTGTTTccacc                                                                                                                                                                                                                                   >  2:1117551/1‑239 (MQ=255)
               tCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCCTCCCGCTGCGGGTCCTTGAGTTGTTTCCACCACt                                                                                                                                                                                                                                >  2:744496/1‑238 (MQ=255)
               tCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCCAGGGGGTGGGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGGCATTGGGTTGTTTCCACCACt                                                                                                                                                                                                                                >  2:1269343/1‑238 (MQ=255)
               tCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGGAATTGTGAACCGGCATCTAACAAATCGGCCTTGGGCTGCGCTTTTTCTTCCCGCCGGTTCGCTTCGGGGGGGGGGTGTGCACCACTTACGGTCCCTTGGGTTCGCGCCTCCCGCGGGCGGGCCTTTAGTTGttttccccccgt                                                                                                                                                                                                                               >  1:1314274/1‑230 (MQ=255)
                ccATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGGGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGGCATTGAGTTGTTTTCACCACttc                                                                                                                                                                                                                              >  2:642174/1‑237 (MQ=255)
                ccATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTCGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGGGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCCCATCCAGCTGCGGGTCATTGAGGTTGTTCCACCACTg                                                                                                                                                                                                                               >  2:645259/1‑238 (MQ=255)
                         gTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCCCTTAGCGTCCGTTGGATCAGCGCATCCACCTGCGGGTCCTTGAGTTGTTTCCACCACTGCGCCTGCgg                                                                                                                                                                                                                      >  2:942680/1‑238 (MQ=255)
                         gTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAAACGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCCTCGGCGAGGGGGGGTGAACCCCTTTGCGTCCGTTGGGTCAGCGCATCCACCTGCGGGGCATTTAGTTGGTTCCCCCACCGCCCCCGccg                                                                                                                                                                                                                      >  1:1265883/1‑236 (MQ=255)
                          tGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGc                                                                                                                                                                                                                     >  2:1102161/1‑238 (MQ=255)
                             cggggcATTCAGTGAATAAGGGCTTAAAAAGCCCTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATGGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGc                                                                                                                                                                                                                 <  2:1304871/235‑1 (MQ=255)
                              ggCGCATCCATTGAATAAGGGCTTAAAAAGGCGGTCGCCGAGACACGTGGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTGAGCGTCCGTTGGAGCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGc                                                                                                                                                                                                                 <  2:59459/238‑1 (MQ=255)
                              ggCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGGGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGGCATTGGGTTGTTTCCACCACTGCGCCTGCggccggcc                                                                                                                                                                                                                >  2:1166038/1‑239 (MQ=255)
                                  tctCCTTTGAATACGGGCTAAAAAGGCCGTCCGCCGGGGCACGTTGGCGGTTGATCAT‑CCCTAACGCGGCGGCCTGTAATTGTGAACCGGCATCTAACAAATCGTCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAg                                                                                                                                                                                                            <  1:785263/237‑1 (MQ=255)
                                    tCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCggg                                                                                                                                                                                                             >  2:846210/1‑235 (MQ=255)
                                    tCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGGGTGAACCCCTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACGTCGCCTCCGGCCAGcccgg                                                                                                                                                                                                             >  2:322724/1‑233 (MQ=255)
                                    tCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCCAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCACCCAGCTTCGGGGCATTGAGTTGTTTTCCCCACTGCGCCCACCGCCACCCgggggg                                                                                                                                                                                                          >  1:960592/1‑235 (MQ=255)
                                    tCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCCGCCTGGGACTGCCCTTTTTTTTCCCGCAGTTTCCCTTCGGCGAGGGTGTGTGAACACCTTATCTTCCCTTGGTTCCGGCCACCCCGCTGCGGGGCACTAGTTTTTTTACACCACTCGGCCCCCGGCCACGCGGAGcg                                                                                                                                                                                                          >  1:356948/1‑238 (MQ=255)
                                      cctttaaaaaGGCCTTAAAAGGCCGTTCGCCGAGTCCCGTTGGCGGTTGAGCAT‑CCCTAACGCGGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTgg                                                                                                                                                                                                        <  1:642174/231‑1 (MQ=255)
                                      cATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATTTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGGGGGTGAACCACTTAGCGTCCGTTGGATCAACGACTCCAGCTGCGGGGCATTGATTTGTTTCACCCACTGGCCCTGCGGCCGGCCGGGGCTg                                                                                                                                                                                                         >  2:970659/1‑238 (MQ=255)
                                       cttGAATAAGGGGTTAAAAACGCGTTGCGCGGGGCACGTTGGCGGTTGAGCAA‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGc                                                                                                                                                                                                       <  1:274812/238‑1 (MQ=255)
                                         tGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGCCATTGAGTTGTTTCCACCCCTGCGCCTCCGGCCAGCCGGGGCTGGCaa                                                                                                                                                                                                     >  2:1063977/1‑239 (MQ=255)
                                          gAATAAGGGCTTAAAAAGCCGTTCGCCGAGACCCGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAg                                                                                                                                                                                                    <  2:1042095/239‑1 (MQ=255)
                                          gAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAg                                                                                                                                                                                                    <  2:973984/239‑1 (MQ=255)
                                          gAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAg                                                                                                                                                                                                    <  2:823422/239‑1 (MQ=255)
                                                gggCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGGTTCGCTTCGGCGAGGGTGGGTGAACCACTTAGCTTCCGTTGGATCCGGGCCTCCAGCTGCGGGGCATTTGGTTGTTTCCCCCCCTGCGCCTGCCGCCCGCCGGGGCGGGCaaagagaat                                                                                                                                                                                              >  1:1155379/1‑232 (MQ=255)
                                                         agcgcGTTCGCCGGAGCCCGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTTGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGc                                                                                                                                                                                     <  2:236325/235‑1 (MQ=255)
                                                                  gccggaacacGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGAt                                                                                                                                                                            <  2:380652/233‑1 (MQ=255)
                                                                        acccGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGtt                                                                                                                                                                       <  2:988807/235‑1 (MQ=255)
                                                                               ggCGGTTGATCAT‑CCCTAACGTTGCGACCTTTTATTGTGCACCGGCATCGAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGTGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTg                                                                                                                                                               <  1:1127491/239‑1 (MQ=255)
                                                                                ggggTTGAGCATCCCCTACGGTTGCG‑CTTTTAATTGTGAACCGGCCTCTAACAAGGCGGCCTGGGACTGCCCTTTTTCTTCCCGCAGGTGCGGTTCGGCGGCGGTGTGTGAACCAGTTAGCGTCCGTTGGATCCGCGCAGCCAGGTGCGGGTCATTGAGTTGTTTCCCCCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTg                                                                                                                                                               <  1:1320502/236‑1 (MQ=255)
                                                                                             cccTAACGCTGCGACCTGTAATTGGGAACCGGCATCTAACAAAGCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAg                                                                                                                                                  <  2:71931/239‑1 (MQ=255)
                                                                                               cTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGCGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGGTTAGGCTGTTGATGAggg                                                                                                                                                >  2:222570/1‑238 (MQ=255)
                                                                                                tAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTg                                                                                                                                               <  2:1265883/239‑1 (MQ=255)
                                                                                                  aCGCTGCGGCCTGTAATTGGGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGGTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCa                                                                                                                                             <  2:386379/239‑1 (MQ=255)
                                                                                                     cgtgggccTGTAAATGTGAACCGTGATCTAACAAAGCGGCCTGGCACTGCGCTTTTTCATCCCGCAGTTTCGCTGCGGCGGGGGTGTGTGAACCACTTAGCGGCCGTTGGATCAGTGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGaa                                                                                                                                          <  1:71433/233‑1 (MQ=255)
                                                                                                       gCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAAt                                                                                                                                         >  2:310064/1‑238 (MQ=255)
                                                                                                       gCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAAt                                                                                                                                         >  2:545671/1‑238 (MQ=255)
                                                                                                       gCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCGGGCAAGAGGAATATCGTCGGCCAGTTTCATTTGTTCCGGTTTGTGCTGTTGCTGGGGTGCAGaaa                                                                                                                                         >  1:143792/1‑237 (MQ=255)
                                                                                                        cGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTATCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGAGGACTATCGTCGGCCAGTTTGTTTTTTTCCGGTTTGAGCTGTGGATGAgaggtcgaaa                                                                                                                                         >  1:1221519/1‑228 (MQ=255)
                                                                                                        cGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCGGCCGGGGCTGGCCAGATGATTTTCGTCGGCCCGGTTGCTTTGTTCCGGTTTTGGCGGTTGAGAAGGTGCCGaaac                                                                                                                                        >  1:204374/1‑236 (MQ=255)
                                                                                                           ccTGTAATTGGGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTGCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCtt                                                                                                                                     <  2:204374/238‑1 (MQ=255)
                                                                                                            cTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTtgat                                                                                                                                                     <  2:58654/221‑1 (MQ=255)
                                                                                                             tGTAATTGGGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACg                                                                                                                                  <  2:1221519/239‑1 (MQ=255)
                                                                                                              gTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGTTGAGGGGCAGAATCCTTACGt                                                                                                                                 >  2:1203665/1‑239 (MQ=255)
                                                                                                                    gtgAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCGGAATCCTTACGAACCAgg                                                                                                                           >  2:568179/1‑239 (MQ=255)
                                                                                                                     tgAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGTCAAGCTGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAgg                                                                                                                           >  2:1003898/1‑238 (MQ=255)
                                                                                                                      gAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGAGGAATATGCTCGGCCAGTTTGATTTTTTCCGGTTTGGGCTGTTGGTGGGGGGCAGaactgtcttttataacca                                                                                                                          >  1:58654/1‑222 (MQ=255)
                                                                                                                       aaCCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCTTCGGCCAGTTTGATTTGTTCCGGTTTGGGCTGTTGAGGGGGGGCAAAAACCTTAAGTACAAggggc                                                                                                                        >  1:500004/1‑237 (MQ=255)
                                                                                                                       aaCCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCGGGGc                                                                                                                         >  2:773234/1‑238 (MQ=255)
                                                                                                                       aaCCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGGGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGGGCTGGCAAGATGAATATCGTCGGCCGGTTTGATTTGTTCCGGATTGAGCGGTTGGTGGGGTGCAGGATCCTTAAGTACCAgggac                                                                                                                        >  1:1004524/1‑237 (MQ=255)
                                                                                                                        aCCGGCATTCAACCAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGca                                                                                                                        <  2:1312637/238‑1 (MQ=255)
                                                                                                                        aCCCGCATTGAACAAATGGGTCTGGGACTGCGGTTTTTTGTCCCGCAGTGTCGCTTCGGGGGGGGTGTGGGAACCGTTTAGCGTCCGGTGGATCAGCGCAGCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGcac                                                                                                                       <  1:1153892/239‑1 (MQ=255)
                                                                                                                         ccGGCATTGAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGGGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGcac                                                                                                                       <  2:1233964/238‑1 (MQ=255)
                                                                                                                         ccGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGTTGAGGGGCAGAATCCTTACGTACCAGGGcac                                                                                                                       >  2:886605/1‑238 (MQ=255)
                                                                                                                         ccGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGcac                                                                                                                       >  2:1012736/1‑238 (MQ=255)
                                                                                                                              aTCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCg                                                                                                                 <  2:500004/238‑1 (MQ=255)
                                                                                                                                       aTCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAg                                                                                                                                                             <  2:781926/186‑1 (MQ=255)
                                                                                                                                       aTCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGAGGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAg                                                                                                                                                             >  1:781926/1‑186 (MQ=255)
                                                                                                                                            cctgggttggcccTTTTTCTTCCCCAAGTTTCGCTTCGGCGAGGGTGTGTGAACCCCTTAACTTCCGTTGGATCAGCGCCGCCAGTTGGGGGTCATAGAGTTGTTTCCGCCACGGGGCCTGCGGCCAGGCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTTAGGTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGtg                                                                                                  <  1:890706/227‑1 (MQ=255)
                                                                                                                                             cTGGGTCTTCTCTTTTTCTTCCCGCAGTTTCGCTTCGGCGGGGGGGTGTGAACCCCTTAGGGTCCGTTGGAGCCGCGCATCCAGCTGGGGGTCATTGAGTTGTTTCCACCCCTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGtg                                                                                                  <  1:1054684/238‑1 (MQ=255)
                                                                                                                                                      cgcTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACTTACCa                                                                                                                             >  1:312001/1‑203 (MQ=255)
                                                                                                                                                      cgcTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGGGaa                                                                                        >  2:1054684/1‑239 (MQ=255)
                                                                                                                                                      cgcTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGaa                                                                                        <  2:549369/239‑1 (MQ=255)
                                                                                                                                                      cgcTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGCCGGCCCGTTTGATTTGTTCCGGTTTGAGCTGTTGTTGAGGAGCCGAACCCTTACGTCCCAGGGC‑CAGCCCGGAAATCAgggcgggggtcgcgataa                                                                                        >  1:1113643/1‑222 (MQ=255)
                                                                                                                                                       gcTTTTTCTCCCCGCAGTTGCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGaa                                                                                        <  2:264933/238‑1 (MQ=255)
                                                                                                                                                           ttttttccccgtgtttcgtttcGGGGGGGGGGTGTGAACCCCTTAGCGTCCGTTGGATCAGCGCATCCAGCTGGGGGTCATTGAGTTGTTTCCACCCCTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGAAtgctg                                                                                   <  1:1009273/227‑1 (MQ=255)
                                                                                                                                                           tttCGTCCCGCAGTTTCCCTTCGGCGGGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGAAtgctg                                                                                   <  2:271894/239‑1 (MQ=255)
                                                                                                                                                                     cattttctgttgggggaggtggtgtgAACCCTTTAGCGTCCGTTGGATCAGCGCCGCCAGCTGCGGGTCATTGAGTTGTTTCCACCCCTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAAcagca                                                                         <  1:1063977/218‑1 (MQ=255)
                                                                                                                                                                         ttCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGCCGTGCTGCCGAGAATGCTGCACAAaagcaa                                                                        >  2:486625/1‑235 (MQ=255)
                                                                                                                                                                            gCTTCGGGGAGGGTGTGTGAACCCCTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGa                                                                  <  2:988107/239‑1 (MQ=255)
                                                                                                                                                                             cTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCCAGCTGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGACGAGGTGCAGAATCCTTACGGACCATGGCCCAG‑CCGGAAATTAGCCGCGGGAGGCCGAAAATGCGGcacacaacgaaaggggaa                                                                 >  1:727326/1‑225 (MQ=255)
                                                                                                                                                                                 ggccgtggTTTGTTAACCCTTTTGCGCCCGTTGGACCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCCCCCCTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGtt                                                             <  1:1117551/233‑1 (MQ=255)
                                                                                                                                                                                       ggTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGAt                                                       >  2:317527/1‑239 (MQ=255)
                                                                                                                                                                                        gtgtttGAACCTCTTAGCGTCCGTTGGAGCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCCCCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGGTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGAt                                                       <  1:942680/238‑1 (MQ=255)
                                                                                                                                                                                           tgtgAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAg                                                                                                                                                                                                            <  1:764802/87‑1 (MQ=255)
                                                                                                                                                                                             tgAACCCCTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCa                                                 <  2:576764/239‑1 (MQ=255)
                                                                                                                                                                                                 ccACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGGGTCGTGGTGCCGAGAAGGCTGCACAACACCAGCCGTGAAAGTTGCCGATTGATCATTGc                                             >  1:147468/1‑239 (MQ=255)
                                                                                                                                                                                                     ttAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGAGTGCTGCACAACAGCAGCCGTGAAAGTTGACGCTTGATCCTTGCGTg                                          >  2:97089/1‑238 (MQ=255)
                                                                                                                                                                                                     ttAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGCTCATTGCgag                                          >  2:1318877/1‑236 (MQ=255)
                                                                                                                                                                                                          gTCCGTTGGATCAGCCGCTCCAGTGGCGGGTCATTGAGTTGTTTCCACCACTTCGCCTGCGGCCCGTCGGGGCTGGCAAGATGAATATCGGCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCt                                    <  1:1012736/239‑1 (MQ=255)
                                                                                                                                                                                                              gTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTtgt                                 >  2:662908/1‑238 (MQ=255)
                                                                                                                                                                                                               ttGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGCCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCCTGGCTCCTtgtg                                >  2:1002734/1‑238 (MQ=255)
                                                                                                                                                                                                                tGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGc                               <  2:143792/238‑1 (MQ=255)
                                                                                                                                                                                                                tGGAGCAGCGCATCCAGGTGCGGGTCATTGAGTTGTTTCCACCGCTGGGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGc                               <  2:367592/238‑1 (MQ=255)
                                                                                                                                                                                                                   aTCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGTCACAG‑CCGGCAATCACCGTCGTGCTGACGAGAATGCTGCCCAACAGACGACGTGAAAGTTGACGATTGTTCATTGCGTGGCGCCTTGTGCCTGt                           >  1:1240840/1‑239 (MQ=255)
                                                                                                                                                                                                                            tCCAGATGCGGGTTATTGAGTTGTGTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGTggcg                  <  2:587555/239‑1 (MQ=255)
                                                                                                                                                                                                                                 cTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGAAGGCTGCACAACAGCAGACGTGACAGTTTACGATTGATCATTCCGTGGCTCCTTGTGCCTGTTCCTGGGGGGGCGt             >  2:1029968/1‑239 (MQ=255)
                                                                                                                                                                                                                                  tgcggggttttGATTTTTTTCCCCCCCGGCGCTTGCGGCCCGCCCGAGCTGGCAAGATGAATAGCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGTGGCGGGCGtt            <  1:606552/230‑1 (MQ=255)
                                                                                                                                                                                                                                  ctggggTTATTGGGTTTTTTCCTCCACTGCGCCTGCGGCCGGCCGGGGCTGGCAAGATGAATCTCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGTGGCGGGCGtt            <  1:545671/236‑1 (MQ=255)
                                                                                                                                                                                                                                   gCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGGTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGTGGCGGGCGtt            <  2:820747/238‑1 (MQ=255)
                                                                                                                                                                                                                                            tGAGTTGTGTCCACCCTGGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGTGGCGGGCGTTAATGCCgggg  <  2:14504/239‑1 (MQ=255)
                                                                                                                                                                                                                                              aGTTGTTTCCCCCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAAACAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACg                                                         <  2:1173540/182‑1 (MQ=255)
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                             
GTATAGTACGGCCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCAT‑CCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAACCACTTAGCGTCCGTTGGATCAGCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAG‑CCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGTGGCGGGCGTTAATGCCGGGG  >  NC_000913/4300604‑4301077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A