Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F9 I0 R1 142 103.7 2603848 81.8% 2129947 227.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,300,841 A→G 11.2% L64P (CTC→CCC)  mdtP ← outer membrane factor of efflux pump

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,300,8410AG11.2% 369.8 / 4.8 148L64P (CTC→CCC) mdtPouter membrane factor of efflux pump
Reads supporting (aligned to +/- strand):  ref base A (53/72);  new base G (12/7);  total (67/81)
Fisher's exact test for biased strand distribution p-value = 1.36e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 148 total aligned reads displayed.

GTATAGTACGGCCCGTCCATAC‑CCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGTGGCGGGCGTTAATGCCGGGG  >  NC_000913/4300604‑4301077
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                            
ttataGTCCGGCCC‑TCCCCACACCAGTGCAGGCGCATGCAGTCAAGAAGGGATTAAAAAGCCGGTCGCCGGACCTCGTTGGCGGTTGTGCCATCCTAACGCTGCGGCCTGTAATTGTGAACCGGCCTCTAAAAAATCGGCCTGTGCCTGCGCTTTTTCTTCCCGCAGTTTCGCTGCGGCCAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAg                                                                                                                                                                                                                                             <  1:881754/238‑1 (MQ=255)
gTATAGTACGGCCCGTCCATAC‑CCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAg                                                                                                                                                                                                                                             <  2:923326/239‑1 (MQ=255)
atataGTCCGGCCCGTCCATAC‑CCAGTGCTGGTGCATCCATTGAATAAGGGCTTAAAAAGTCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAg                                                                                                                                                                                                                                             <  2:264843/238‑1 (MQ=255)
      tACGGCCCGTCCATAC‑CCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGGGCATCCCTAACGCAGCGACCCGTAATTGTGAACCGGCCTCTAACAAAACGGCCCGGGACTCCGCTTTTTCTTCCCCCAGTTTCGCCTCGGCCGGGGTGGGCAAACCCACTAACCG‑CCGTTTGATCC‑ACCCCTCCAGCTGCGGGGGATTGAggtggt                                                                                                                                                                                                                                        >  1:572514/1‑236 (MQ=255)
         ggCCCGTCCATAC‑CCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTTGCTTCGGCGAGGGTGTGTGAA‑CCACTTAACGTCCGTTGGATCA‑GCGCCACCAGCTACGGGCACTTGAGTTGTTTct                                                                                                                                                                                                                                     >  2:46060/1‑237 (MQ=255)
           cccGTCCATAC‑CCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGTGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTtcac                                                                                                                                                                                                                                   >  2:1160357/1‑238 (MQ=255)
           cccGTCCATAC‑CCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGGGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCTTTGGGTTGTTTtcacc                                                                                                                                                                                                                                  >  2:319825/1‑239 (MQ=255)
           cccGTCCATAC‑CCAGTGCTGGCGCATCCATTGAATAAGAGCTTAAAAAGCCGTTCGCCGGGACCCGTTGGCCGGTGAGCATCCCTTACCTTGCGCGCTGTAATTTTGCACAGGCGTCTAGACAATCGTCCGCGGGTCGCGCTTTTTCTTCCCCTAGATTCCCTTCCGCGGAGGGGTGTGGA‑CCAATTAGCCTCCGTTGGATCACGCGCA‑CCACCTAGCGGACATTGAGGTGTTTccacc                                                                                                                                                                                                                                  >  1:32599/1‑239 (MQ=255)
                ccATAC‑CCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTTCGGGTCATTGAGTTGTTTCCCCCCCTg                                                                                                                                                                                                                              >  2:816128/1‑238 (MQ=255)
                ccATAC‑CCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGGCATTGAGTTGTTTCCACCACTg                                                                                                                                                                                                                              >  2:1090326/1‑238 (MQ=255)
                           tGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGATCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTTGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGGGAA‑CCACTTAGCGTCCGTTGGGTCA‑GCCCCTTCCGGCCAGGGGCACTGGTGTGTTTCCACCACCGCCCCTGccga                                                                                                                                                                                                                    >  1:143504/1‑235 (MQ=255)
                           tGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTTCCGCAGGTTTGTTTCGGCGAGGGGGGGTGGA‑CCACCTAGCGTCCGTTGGATCA‑GCGCATCCACCTGCGGGCCATGTGGTTGGTTccacacatgggcccgcgggc                                                                                                                                                                                                                   >  1:201672/1‑223 (MQ=255)
                           tGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGCA‑CCACTTAGCGTCCGGTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCCCTGCGCCTGCGGcc                                                                                                                                                                                                                   >  2:176249/1‑239 (MQ=255)
                           tGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGGGTGTGAA‑CCACTTAGCGTCCGTTGGGTCA‑GCGCCTCCAGCTGCGGGGCATTGAGTTGTTTCCCCCACTGCGCCTGCGGc                                                                                                                                                                                                                    >  2:1083012/1‑238 (MQ=255)
                            gCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCCCTTCGGCGAGGGGGGGTGAA‑CCACTTAGCGTCCCTTGGATCA‑GCGCAACCCGCCGCGGGGCCTTTGGTTGTTTCCACCCCAGCGCCTGCGGCCa                                                                                                                                                                                                                  >  1:291749/1‑239 (MQ=255)
                               ggCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGc                                                                                                                                                                                                                <  2:63572/238‑1 (MQ=255)
                                gcgcATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGGGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCCCTGCGCCTTCGGCCAGCCg                                                                                                                                                                                                              >  2:1145078/1‑239 (MQ=255)
                                   cctCCTTTGAATAAGGGCTTAAAAAGCCTGTCGCCGGGCGCGGTTGGCGGTTGAGCATCCCTAACGCTGGGACCTGTAAGTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAT‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAg                                                                                                                                                                                                           <  1:1100566/237‑1 (MQ=255)
                                    aTCCATTGAATAAGGGCTTAAAAAGCCGTTCGGCGAAGCACGTTGGCGGTTGAGCATCCCTAACGCTGGGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAg                                                                                                                                                                                                           <  2:293843/238‑1 (MQ=255)
                                     tCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGGCATTGAgttgtt                                                                                                                                                                                                                                        >  2:1084201/1‑208 (MQ=255)
                                     tCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGGGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑ACGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGa                                                                                                                                                                                                            >  2:1078263/1‑236 (MQ=255)
                                     tCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTAGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCGGCGGGGGATTGGGTTGTTTCCCCCACTGAGCCCTGGGCCAGACGGAGcc                                                                                                                                                                                                         >  2:967975/1‑238 (MQ=255)
                                        ttttaaaaggggTTTAAAAGTCCGTGCGCCGTGACCCGTTGGGGGTTGAGCTTCCCTACCGCTGCGACCTGTAATTGTTAACCGGCATCTAACAAATCGGGCTGGGGTTTCGCTGTTTCTTCCCGCAGTTTCGTTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTTCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGc                                                                                                                                                                                                      <  1:1225923/230‑1 (MQ=255)
                                        cgtGAATAAGGCGTTAAATAGCCGTTCCTCGGAGCACTTTGGCGGTTGAGCATCCCGAACGCTGCGATCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTGCGGCGAGGGTGTGGGAA‑CCGCTTAGCGTCCGTCGGAGCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGc                                                                                                                                                                                                      <  1:483703/237‑1 (MQ=255)
                                        aTTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGc                                                                                                                                                                                                      <  2:1148581/239‑1 (MQ=255)
                                        aTTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGc                                                                                                                                                                                                      <  2:215461/239‑1 (MQ=255)
                                        aTTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGGGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGc                                                                                                                                                                                                      <  2:1286943/239‑1 (MQ=255)
                                           taaTAAGGGCTTAAAAGGCCGTTCGCCGGGACCCGGTGGCGTTTGTGCATCCCTACCGCTGCGACCTGTAATTGTGAACCTGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CAGCTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAg                                                                                                                                                                                                   <  1:1251543/238‑1 (MQ=255)
                                                 gggCTTAAAAGCCGGTTCGCGGTGACATCGTGGCGGTTGAGCATCCCTCACGCGGCGGCCTGTAATTGTGAACCGGCATCTAACAACTCGGCCTGGGACGTCGCTTTTTCTTCCCGCATTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGGCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGaa                                                                                                                                                                                              <  1:25898/238‑1 (MQ=255)
                                                         aaaGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCgg                                                                                                                                                                                     <  2:73453/239‑1 (MQ=255)
                                                         aaaGCCGTTCCCCGGGATGGTTTGGCGGTTGAGCACCCCTAACGCTGCGACCTGTAATTGTGAACCGGGATCTAACAAACCGGGCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTTTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCgg                                                                                                                                                                                     <  1:671771/239‑1 (MQ=255)
                                                          aaaccGTTCGCCGAGACACGTGGGCGTTTGAGCATCCCTAACGCTGGGGCCTGTAATTGGGAACCGGCATCTAACAAATCGGCCTTGGACTGCGCTTTTTCTTCCCGCAGGTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGGTCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGc                                                                                                                                                                                    <  1:1046090/236‑1 (MQ=255)
                                                             ccGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGGGTTGTTTCCCCCCCTGCGCCTGCGGCCAGCCGGGGCTGGCAAGATGAATATCGTCGGCCAg                                                                                                                                                                                 >  2:636213/1‑239 (MQ=255)
                                                             ccGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAAAATCGTCGGCCAg                                                                                                                                                                                 >  2:671771/1‑239 (MQ=255)
                                                              cGTTCGCCGAGACACGTTGGGGGTTGGGCATCCCTAACGCTGGGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGt                                                                                                                                                                                <  2:865746/239‑1 (MQ=255)
                                                               gTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAACGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCCCCTGCGGGCAGCCGGGGCTGGCAAGATGAATATCGTCGGCCCGtt                                                                                                                                                                               >  2:1249103/1‑239 (MQ=255)
                                                                   gCCGAGACGTGTTGGCGGTTGAGCATCCCCAACTCGGCGTCCTGTAAGTGTGAACCGGCATCTAACAAATCGGCCTGGGGCTGCGTTTTTTCTTCCCGCAGTTTCGTTTCGGCGGGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCACCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGAt                                                                                                                                                                           <  1:774467/239‑1 (MQ=255)
                                                                   ccctggccccGTTTGCGGTTCATCAGCCCTAAGGCTGCGACCTGTAATTGTGACCCGGCAGCCAACAAATCGGCCTGGGGCTGTCCTTTTTCTTCCCGCAGGTTCGCTTAGGCGAGGGTGTGTGAA‑CCACGTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGAt                                                                                                                                                                           <  1:726405/230‑1 (MQ=255)
                                                                         ccccGTTGGCCGTTGAACATCCCTACCGCTGCGCCCTGGTATTGTGAACCGGCCTCTAACAAACCGGCCTGGGACTGCGGTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGtt                                                                                                                                                                      <  1:451151/235‑1 (MQ=255)
                                                                                           ctCCCGAACGCTTCGACTTGTAATTGGCAACCGGCCTCTTACAAAGCGGCCTGGGAAGGCGCGTTTTCTTCCCGCAGTTTCGCTTCGGCGATGGTGTGTGAA‑CCACTTAGCGTCCGGTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTtgat                                                                                                                                                    <  1:1066010/237‑1 (MQ=255)
                                                                                           aTCCCTAACGCTGCGCCCTGTAATTGGGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTtgat                                                                                                                                                    <  2:147431/238‑1 (MQ=255)
                                                                                           aTCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAAGCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTtgatg                                                                                                                                                   <  2:143504/239‑1 (MQ=255)
                                                                                            tCCCTAACCCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTtgatga                                                                                                                                                  <  2:1005778/239‑1 (MQ=255)
                                                                                            ccctttcctgtgggtccTTTATTTGTGAACCGGTAGCTCACAAATTGGGCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGTGTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCTCATCCAGCGGCGGGTCATTGAGTTGTTTCCACCACTGCTCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTtgatga                                                                                                                                                  <  1:157020/224‑1 (MQ=255)
                                                                                                tAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTg                                                                                                                                              <  2:18347/239‑1 (MQ=255)
                                                                                                       gcgcCCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGGA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGTCCAGCCGGCGGTGGCGAGGTGAATAACTTCGGCCAGTTTGATTTTTTCCGGTTTGAGcgtgtaaagggagctaggatc                                                                                                                                       >  1:627933/1‑219 (MQ=255)
                                                                                                       gCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCCCTGCGCCTCCGGCCAGCCGGGGCTGGCAAGGTGATATTCGTCGGCCGATTTTTTTTGTTCCGGGTTGGGcgtttttatgggggcaaaac                                                                                                                                        >  1:187930/1‑219 (MQ=255)
                                                                                                        cGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCCTCCAGCTGCGGGGCATTTAGTTGTTTCCACCCCTGCGCCCGCGTCCCGCCGGGGCTGGCAAGATGAATTCCTTCGGCCAGTTTGTTTTTCTCCGTTTTGGGCTGTTGCTGGGGGGCCGaaaac                                                                                                                                      >  1:803061/1‑236 (MQ=255)
                                                                                                        cGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCCGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGaac                                                                                                                                        >  2:196112/1‑236 (MQ=255)
                                                                                                           cgtttAATTGTTAAGCTGCATCTATCCTATCGGCCTGGCTCTTCGCGTTTGTTTCCCGCAGTCTCGTTCGGGCGGTGGTGTGTGAT‑CCTCCTCGTGTCCGTGGTATCA‑GCTCTTCCATGTGCCGGTCATGATTTTGTGTCCTCCACTGCGCCTGAGGCCAGCCGGAGTGGGCAATATGACTATCGTCGGCCAGTTTGATGTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTa                                                                                                                                   <  1:744609/235‑1 (MQ=255)
                                                                                                                      gAACCGGCATCTAACAAATCGGCCTGGGACTTCGCTTTTTCTTCCCGCCGTTTCGCGTTGGCGAGGGTGTGTGAA‑CCACTTAGCGGCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCCTTAAGTTGGTTCCACCACTGCGTCTGCGGCCAGCCGGAGCTGGCAAGTTGAATACTGTCGGCCCACTTGATTTGGTCCGGTGTGAGCTGTTGATGGTGTGCCGCATCCTTACGTAACAggga                                                                                                                        >  1:1001621/1‑238 (MQ=255)
                                                                                                                        aCCGTCATCTAACGAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCATTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGcac                                                                                                                      <  2:366879/239‑1 (MQ=255)
                                                                                                                              agcTAACAAATCGGCCTGGGACTTCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCg                                                                                                                 <  2:462047/236‑1 (MQ=255)
                                                                                                                                       tccgtctttggctttgcgttttttttTCCGCAGTTTCGGTTCCGTGGGGGTGTTGTAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGGGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGcg                                                                                                       <  1:337906/221‑1 (MQ=255)
                                                                                                                                       aTCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAACCGGAAATCAGc                                                                                                        >  2:246282/1‑238 (MQ=255)
                                                                                                                                         cGGCCTGGGACTGCGTTTGTTCCTCCCGGAGTTTCGCTTGGGCGAGGGTGTGGGGC‑CCCCTGGGCGTCGGTTGGATCA‑GCGGATCCAGCTGGGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAAGATCGTCGGCCAGTGTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGcgtc                                                                                                     <  1:46060/239‑1 (MQ=255)
                                                                                                                                           gCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAg                                                                                                                                                            >  2:455985/1‑182 (MQ=255)
                                                                                                                                             tttgtgtggcgtTTTTTCCTCCCACTTTTGCGTTTCGGCGAGGGTGTGTGAA‑CCAGTTGGCGTCCGTGGGAGCA‑GCGCCTCCAGCTGCGGGTCATGGAGTTGTTTCCAGCACTGCGCCTGCGGCCGGCCTGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGCTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCGTACGTACCAGGGCACAGCCGGAAATCAGCGTCGtg                                                                                                  <  1:735496/230‑1 (MQ=255)
                                                                                                                                             cggggACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGtg                                                                                                  <  2:330809/236‑1 (MQ=255)
                                                                                                                                             cTGGGACTGCGCTTTTTCTTCCCGGAGTTTCGCTTCGGCGGGGGTGTGTGAA‑CCCCTTAGCGTCCGTTGGATCA‑GCGCAGCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGtg                                                                                                  <  1:1180071/238‑1 (MQ=255)
                                                                                                                                                      cgcTTTTTCTTCCCGCATTTTCGCTTCGGCGGGGGTGTGTGAA‑CCCCTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGaa                                                                                        <  2:625221/239‑1 (MQ=255)
                                                                                                                                                      cgcTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGaa                                                                                        >  2:96964/1‑239 (MQ=255)
                                                                                                                                                      cgcTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCGGCCGAGaa                                                                                        >  2:319118/1‑239 (MQ=255)
                                                                                                                                                      cgcTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGCCGTGCTGCCGGGaa                                                                                        >  2:26790/1‑239 (MQ=255)
                                                                                                                                                      cgcTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGAGGAATACCGTCGGCCAGGTGGTTTTGTTCCGGGTTGCGCTGTTGATGAGGAGCAAAATCCTTACGTACCAGGGCACAGCCGGAAATCatggcctggtggccgctaa                                                                                        >  1:176050/1‑221 (MQ=255)
                                                                                                                                                        cTTTTTCTTCCCGGAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAAtg                                                                                      <  2:707725/239‑1 (MQ=255)
                                                                                                                                                         tttttCTTCCCGTAGTTTCGCTTCGGGGAGGGTTTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAAtg                                                                                      <  2:840344/238‑1 (MQ=255)
                                                                                                                                                              cttcCCGCATTTTCGCTTCGGCGAGGGTGTGTGAA‑CCCCTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGcac                                                                                <  2:665634/239‑1 (MQ=255)
                                                                                                                                                              cttcCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGcac                                                                                <  2:803061/239‑1 (MQ=255)
                                                                                                                                                                            gattCGGCGAGGGTTGGTGAA‑CCCCTTAGCGTCCGTTGGACTA‑GGCCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGa                                                                  <  2:40782/237‑1 (MQ=255)
                                                                                                                                                                                cGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGTGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCTTGCTGCCGAGaa                                                                                        >  2:766563/1‑213 (MQ=255)
                                                                                                                                                                                  gggggtggtttgggtaccctttAGCGTCGGGTGGATCA‑GCGCATCCAGCTGCTGGTCATTGGGTTTTTTCCACCCCCGCGCCGTCGGCCAGCCGGAGCTGGCAAGATGAATAGCGTGGGCCATGTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGtt                                                             <  1:1083012/219‑1 (MQ=255)
                                                                                                                                                                                  gggggggttggggAA‑CCCATTTGCGTCCGTGGGAACG‑GCGCGTCCAGGCGCGGGTCGTTGGGATGTTTCCGCCACTGCGCCTGCGGCCAGGCGGAGCTTGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGtt                                                             <  1:1005608/226‑1 (MQ=255)
                                                                                                                                                                                   gaccggggtttgAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGtt                                                             <  2:1104418/227‑1 (MQ=255)
                                                                                                                                                                                    ttttttaaggcaccgcccTTTGCTTCCTTTGGATCA‑GCGCATCCCGCTGCGGGTCATTGAGTTGTATCCCCCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGa                                                           <  1:527761/222‑1 (MQ=255)
                                                                                                                                                                                     gggggggttttaacacattAGCGTCCGGTGGATCA‑GGCCATCCGGTGGCGGGTAATTGGGTTGTTTCCCCCACTGCGCCTGCGGGCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGa                                                           <  1:26790/221‑1 (MQ=255)
                                                                                                                                                                                       ggTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAAcagca                                                                         <  2:1246483/221‑1 (MQ=255)
                                                                                                                                                                                            gtccggtgttgataagagccagggATCA‑GCGCATCCAGGTGCGGGTACTGGAGTTGTTTCCACCACTGGGCCGGCGGACAGCCGGAGCTGGGAAGATGAATATCGGCGGCCAGTTTGATTTGTGCCGGGTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCGGCACAACAGCAGACGTGAAAGTTGACGATTGAt                                                   <  1:533573/217‑1 (MQ=255)
                                                                                                                                                                                                   cACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGc                                                                                                                                                                                                      <  2:953702/85‑1 (MQ=255)
                                                                                                                                                                                                   cACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGc                                                                                                                                                                                                      >  1:953702/1‑85 (MQ=255)
                                                                                                                                                                                                    aCTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGGGAATGCTCCACAAAAGCAGACGGGCAAGtttggaattgatccgttc                                             >  1:1104418/1‑221 (MQ=255)
                                                                                                                                                                                                      ttAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTg                                          >  2:755653/1‑238 (MQ=255)
                                                                                                                                                                                                      gggccggccGTTGGGTCA‑GCCCATCCAGGTGCGGGTCATTGAGTTGTGTCCACCACGGCGCCTGGGGCCAGCCGGGGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGGTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTgg                                         <  1:816128/232‑1 (MQ=255)
                                                                                                                                                                                                           gTCTGTTGTATCC‑GCGCTTTCGGCTGGGGGTCATTGGTTTTTTTCCCCCCCTGCGCCTGCGGCCAGCCGGGTCTGGCAAGTTGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCt                                    <  1:65043/239‑1 (MQ=255)
                                                                                                                                                                                                              cGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCa                                                 >  2:527761/1‑223 (MQ=255)
                                                                                                                                                                                                               gTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGGGAATGCTGCACACCAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTggt                                 >  2:531697/1‑238 (MQ=255)
                                                                                                                                                                                                                tttgATCA‑GCGCATCCAGGTGGGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATTAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGc                               <  2:39839/236‑1 (MQ=255)
                                                                                                                                                                                                                          cgcATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACACCAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGt                      >  2:1253249/1‑239 (MQ=255)
                                                                                                                                                                                                                          cgcATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGt                      >  2:1281987/1‑239 (MQ=255)
                                                                                                                                                                                                                          cgcATCCAGCTGCGGGTCATTGAGCTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGa                                                                                                                                                                                                  >  2:627010/1‑67 (MQ=255)
                                                                                                                                                                                                                             atcgggatgtgggTCATTGAGTTGTTTCCACCCCTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGCATATCGTCGGCCAGGTTGATGTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGTggc                   <  2:1113184/229‑1 (MQ=255)
                                                                                                                                                                                                                              tCCAGCTGCGGGTCATTTGGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGTggcg                  <  2:330188/239‑1 (MQ=255)
                                                                                                                                                                                                                              tCCAGCTGCGGGTCATTGAGTTGTTTCCCCCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGGCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGTggcg                  <  2:201672/239‑1 (MQ=255)
                                                                                                                                                                                                                              tCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCCCAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTgg                                         >  2:533573/1‑216 (MQ=255)
                                                                                                                                                                                                                              tCCAGCTGCGGGTCATTGAGGTGTTGCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAGGATGAATATAGTCGGCCAGTTTGGTTTGTTCCGGTTTGAGCTGTTGATGAGGGGCAGAATCCTTACGTACCAGCGCACAGACGGAGATCAGCGTCGTGCCGCCGAGCATGCGGCACAACAGCAGCCGTGCAACTGGCCCATGGACAATAGCGTGGCGCATTGTGCCTTTTCCGTgagg                  >  1:293426/1‑236 (MQ=255)
                                                                                                                                                                                                                               ccAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCCTTGCCTGGCTCCTTGTGCCTGTTCCGTggcgg                 >  2:469151/1‑239 (MQ=255)
                                                                                                                                                                                                                                     gCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGTGGCGGGCGtt            <  2:1001621/238‑1 (MQ=255)
                                                                                                                                                                                                                                          tCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGTGGCGGGCGTTAATGc       <  2:291749/238‑1 (MQ=255)
                                                                                                                                                                                                                                            aTTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTAc                                                                                                                              >  1:882177/1‑117 (MQ=255)
                                                                                                                                                                                                                                            aTTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGGGAAAGTTGACGATTGATCATTGCGGGGCTCCTTGTGCCTGTTCCGTGGCGGGGGGTAATGcccg    >  2:342628/1‑237 (MQ=255)
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                            
GTATAGTACGGCCCGTCCATAC‑CCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACTGCGCTTTTTCTTCCCGCAGTTTCGCTTCGGCGAGGGTGTGTGAA‑CCACTTAGCGTCCGTTGGATCA‑GCGCATCCAGCTGCGGGTCATTGAGTTGTTTCCACCACTGCGCCTGCGGCCAGCCGGAGCTGGCAAGATGAATATCGTCGGCCAGTTTGATTTGTTCCGGTTTGAGCTGTTGATGAGGTGCAGAATCCTTACGTACCAGGGCACAGCCGGAAATCAGCGTCGTGCTGCCGAGAATGCTGCACAACAGCAGACGTGAAAGTTGACGATTGATCATTGCGTGGCTCCTTGTGCCTGTTCCGTGGCGGGCGTTAATGCCGGGG  >  NC_000913/4300604‑4301077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A