Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F9 I0 R1
|
80 |
116.8 |
2384848 |
97.0% |
2313302 |
226.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,862,672 |
G→A |
19.5% |
pseudogene (931/1617 nt) |
glvC ← |
pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,862,672 | 0 | G | A | 19.5%
| 62.8
/ 2.8
| 48 | pseudogene (931/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| Reads supporting (aligned to +/- strand): ref base G (21/17); new base A (3/6); total (25/23) |
| Fisher's exact test for biased strand distribution p-value = 2.86e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCAC‑GGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTT‑GCGGG‑AATCA‑GC‑AAG‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAGTG > NC_000913/3862450‑3862906
|
tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCAC‑GGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGAT‑GCGGG‑GATTA‑GCAAAG‑CCCC‑CCAt‑ttt > 2:202776/1‑239 (MQ=255)
gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCAC‑GGCGTGTACCGCCAACAGCAACGGTGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTTAGGGT‑GGGGG‑AATCACGC‑AA‑‑CCCG‑CGCC‑TTTTA‑ccc > 2:954372/1‑238 (MQ=255)
gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCAC‑GGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAAGTT‑GGGGG‑GAACA‑GC‑CAG‑CCCG‑CCCC‑TTTTA‑ccc > 2:1138245/1‑238 (MQ=255)
cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCAC‑GGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGGT‑GCGGG‑GATTA‑GA‑GAA‑CCCC‑CCCC‑TTTTT‑cccca > 2:436527/1‑237 (MQ=255)
gTTGCTGAACATCGGGATACAGTTTTGCGGTAAAACCTAGTCAATCAGACCCCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCAC‑GGCGTGTACCGCAAACAGCCACGGTGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGGAATTCCCACCAGCATGGC‑GGGTCAGGGT‑GCGGG‑GATTA‑GC‑AAgaaactcacatttatacgcattt > 2:614148/1‑217 (MQ=255)
gATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCAC‑GGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTT‑GCGGG‑GAACA‑GC‑AAC‑ACCGCCCCC‑TTTTA‑CCC‑‑ATTTTTCGGTGC‑gggaggga > 2:797896/1‑239 (MQ=255)
tCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCAC‑GGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTT‑GCGGG‑GATCA‑GC‑AAA‑CCCG‑CCCC‑TTTTT‑CCCC‑CTTTTCCCGGGC‑GGCAGGGaaa > 2:750574/1‑238 (MQ=255)
cAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCAC‑GGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGATAAGGTT‑GCGGG‑GAACC‑GC‑AAA‑CCCC‑CCCC‑CTTTA‑ACCG‑CGTTTTCTGTGC‑ggtcgtggagga > 1:140429/1‑229 (MQ=255)
attttcGCGGAAAAACATAGCAAAACACCCCCCCGCCCGTGTCCCCCACCCCACAAAAGAGAACCATTACGGCCGACATTGAGGCCGCCAGCAC‑GGCGTGTCCCGCAAACAGCAGAGGTAAAATGAACAGGAAGGTAAA‑TTCAAGCGGTTCGGTAATCCCCCCCAGCATGGC‑GGTTAGGGTT‑GCGGA‑AATAA‑GC‑AAG‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTAc < 1:291425/237‑1 (MQ=255)
ttttGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCAC‑GGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTT‑GCGGG‑GATCA‑GC‑AAA‑CCCG‑CCCC‑TTTTT‑CCCC‑ATTTTTCGGTGC‑GGCAGGGAAGTACa > 2:998706/1‑238 (MQ=255)
aaaCCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCAC‑GGCGTGTACCGCAAACAGCAACGGGGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGGTAAGGGT‑GCGGG‑GAACA‑GC‑AAG‑CCCG‑CCCC‑TTTTT‑ACCC‑ATTTTTCGGGGC‑GGCAggggaggaacttggctaagaa > 2:236363/1‑219 (MQ=255)
cGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCAC‑GGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTCAAGGG‑GCGGG‑GAGCA‑GC‑ACA‑CCCC‑CCAC‑TTTTA‑CCCC‑TATTTTCGCGGC‑GGCACGGACGGACAT‑CGCTAAAGAACTACCCA‑CGGGCCCAAAGagt > 1:498663/1‑237 (MQ=255)
cccagttttGCCCACCCCCCCAAAGAAAAACTTTAGGGGCGAAGTTGA‑GCCCCCCGCGCGGGCGTGTACCGCAAACAACAAGGGTAAAAGGAACAGGAGTGAAAA‑TTCCGGTGGTTCGGAATTCCCCACGAGTATGGC‑GGTTAAGGTT‑CGGGG‑AATCA‑GC‑AAG‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAt‑tt < 1:599458/232‑1 (MQ=255)
caggTTGCCCACCCCACAAAAAAAATACATTACGGCCAACATGAAGCCCCCCAGCAC‑GGCGTGTCCCGCAAACAGAACCGGGGAAAGGAACAGAAAGTTAAA‑TTCCGGCGGTTCGGTAATCCCCCCCAGCATGGC‑GGTTAAGTTT‑GCGGG‑AATCA‑GC‑AAG‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTg < 2:449534/236‑1 (MQ=255)
accacacaaAAGAGATACATAACGGTCGACATTGAGGCCCCCAGCAC‑GGGGTTTCCCGCAAACAGCAACGGTAAAAGGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATCCCCACCAGCATGGC‑GGTTAAGGTT‑GCGGG‑AATCA‑GC‑AAG‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTg < 2:335246/239‑1 (MQ=255)
cacaccaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCAC‑GGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGGTAAAGGT‑GCGGG‑GAACA‑GC‑AAGACCCC‑CCCT‑TTTTA‑CCCG‑ATTTT‑CGGTGG‑GGCAGTGAAGGACAA‑CGCTAAAAAAAAGCCCA‑CCGGCCCCAAGAA‑TTTTTAGtttaccgggc > 2:1182898/1‑231 (MQ=255)
aTACATTACGGTCGACATTGAGGCCGCCAGCAC‑GGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGGT‑GCGGG‑AATAA‑GC‑AAA‑CCCC‑CCACTTTTTA‑CCCG‑TTTTTCGGGGCG‑GGCGGTG‑AGAACAA‑ACCTAAAAAAAAGCCCC‑CAGGCCCAAAGAT‑TTTTTAGTGTGCGGGCCAGGC‑AAAACCg > 1:1110160/1‑238 (MQ=255)
aTTACGGTCGACATTGAGGCCGCCAGCAC‑GGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTT‑GCGGG‑AATCA‑Gc < 2:926555/129‑1 (MQ=255)
gTCGACATTGAGGCCGCCAGCAC‑GGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGGTTAAGGTG‑CGGGG‑AACAA‑CC‑AAG‑CCC‑‑CCCC‑CTTTA‑CCCC‑CTTTTCCGGTGG‑GGCAAGGAAGAACAC‑CCCTAAAAAAAAACCCC‑CGGCACCAAAGATGTTTTGAGTTACC‑TGGCGGGC‑AAAACCCCCCTCCcggca > 1:644905/1‑237 (MQ=255)
gTCGACATTGAGGCCGCCAGCAC‑GGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGGTTAGGGT‑TCGGG‑AATCA‑GC‑CAG‑CCCC‑CCCC‑CTTTA‑ACCGAATTTTCCGG‑GC‑GGGAGGGAAGGACATCCCCCAAAAAAAACCCCA‑CGCCCCCAAAGAT‑TTTTGAGTCA‑CGTGCCCGGC‑AAAAcaccccctcgggaa > 1:1115232/1‑226 (MQ=255)
tCGACATTGAGGCCGCCAGCAC‑GGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGGT‑GCGGG‑AATCG‑AC‑AAG‑CCCC‑CCCC‑TTTTT‑CCCG‑TTTTTCTGGGGC‑GGCCGAGAAAGACAA‑AACTTAAAAAATTGCCA‑CAGCACCCAAGAT‑TTTTAAGGTACCGTTCTCTGC‑ATAAACGCCCTCCggggaa > 1:954132/1‑236 (MQ=255)
tGAGGCCGCCAGCAC‑GGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGGTAAAGGTT‑CCGGG‑AA‑CA‑AC‑AAGCCCCC‑CCCC‑TTTTC‑CCCG‑TTTTTCGGGGGC‑‑GCAGGGGAGGACAT‑ACCTCAACAAATGCCCACCGGACCCAAAAAT‑TTTTTGTTTCCCGCGCGGGGA‑ACAACCCCCTCCCGGGaacacgcat > 1:840190/1‑234 (MQ=255)
cAC‑GGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGGTTAAGG‑T‑GCGGG‑AATCA‑GC‑AAC‑ACCG‑CCCC‑CTTTT‑CCCC‑ATTTTCTCGTGCGGGCGGGGAAG‑AAAA‑CGCCTAAAAAATGCCCC‑CCGCACCAAAAAA‑TTTTTAGTTACCCCGCCGGGG‑AAAAACACCCTCCGTGgacaacaactttcacggccccg > 1:870343/1‑223 (MQ=255)
ccgcgggtgtACCGAAAACAACAACTGTAGAATAAACAGGAATGTAAA‑TCCCAGC‑TTTCCGTAACTCCCCCCAAGGAGGG‑GGCTTAGGTT‑GGGGGCAACAA‑GC‑AAC‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCgg < 1:1107366/233‑1 (MQ=255)
cc‑GGCGTGTACCGAAAACAGCAAGGGTGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTGGGTAATCCCCACCAGCATGGC‑GGTTAAGGTT‑GGGGG‑AATCA‑GC‑AAG‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTc < 2:140429/235‑1 (MQ=255)
agggggtgacccgaaaacggataCGGTGCATTGACCAGGAAGGTAAC‑TCCCAGCGGTCCGTCATTCCCCCCCGGCTGGGC‑GATAAAGGTT‑GGGGG‑AACCG‑AC‑ACC‑GCCG‑CCAC‑GTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTc < 1:954372/214‑1 (MQ=255)
ggCGTGTACCGAAAACAGCAACGGTGAAATAAACAGGAAGGTAAA‑TCCCAGCGGTTCGTTAATCCCCACCAGCAGGGC‑GGTAAGGTTT‑GGGGA‑AATCA‑GC‑AAG‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTg < 2:761077/131‑1 (MQ=255)
gCAAACAGCAACGGTGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAAGGT‑GCGGG‑GATCA‑GC‑AAG‑CCCG‑CCAC‑CTTTACCCCC‑ATTTTCC‑GCGC‑GGCCGTGAAAGAAAT‑ACCCAAAAAAAAGCCCC‑ACGCACCCAAAAA‑TTTTTAGTTACAGGTCGGGGCAAAAACCCCCTTCCGGG‑ACAACGAATTTCacgggccccggcgccaacctg > 1:1167679/1‑218 (MQ=255)
aaaCAGCAACGGGGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTTAGGTT‑TCGGG‑AAATC‑GC‑AAA‑CCCC‑CCAC‑TTTTA‑CCCG‑AGTTTTCCGTGC‑GGCCGGGAAGGACAT‑CGCTAAAAAAAAAACCA‑CGCTCCCCAAAAT‑TTTTTAGTTATCGTGCAGGGC‑AAAAACGCCCTCCGGGAACAAAG‑ATTTTAggcgcgccgggtccaatccacac > 1:851352/1‑216 (MQ=255)
gAAATGAAGAGGAAGGTAAA‑TCCCGGCGTTTCGTAAATTCCCACCAGTATGCG‑GGTTAAGGTT‑GGGGA‑AATCA‑GA‑AAA‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGAtgct < 2:851352/238‑1 (MQ=255)
aaaagaaaaaggaaggaAAA‑TTCCGGGGGGTGTGTAATCCCCCCCCGCGGGGG‑GGTTAGGGGG‑GCGGA‑AACCA‑GC‑AAG‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGAtgct < 1:797896/229‑1 (MQ=255)
aaaGGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATCCCCACCAGCATGGC‑GGTTAAGGTT‑GCGGG‑AATCA‑GC‑AAC‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAg < 2:367797/232‑1 (MQ=255)
aaCAGGAAGGAAAA‑TTCCGGGGTTTCGGTAATTCCCCCAAGCATGGC‑GTTAAAGGTG‑GCGGA‑ACTCA‑GA‑AAG‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 1:1182898/237‑1 (MQ=255)
cgaagaagTAAATTTCCGGCGGTTCGAAAACCCCACCCGGCAGGGG‑GGTTAAGTGT‑GGGGT‑AATCA‑AC‑GAG‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAg < 1:113379/232‑1 (MQ=255)
tAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTTAAGGT‑GCGGG‑GATCA‑AC‑AAA‑CCCC‑CCCC‑TTTTA‑CCCG‑ATTTTTCGGTGC‑GGGAGTGAACTACAT‑CGCCCAAGAAAATACCA‑CCGGCCCCAAGAA‑TTTTGAGTTACCGTGCAGGGC‑AAAAAAGCATTCCCGGGACAAAC‑ATTTCAGACGCTCCGTGGTCAAAATGAAATCTTTCACAtggcggcccccggtcacacag > 1:1024910/1‑220 (MQ=255)
ttccgtgtggttgtaatatccccACCAGCATGGG‑GTATAAGGTG‑GCGGG‑AAAGA‑AC‑AAC‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATg < 1:781462/219‑1 (MQ=255)
tcgatgggTACGGTAATCCCCCCCAGCAGGGC‑GGTTAAGGTG‑GCGGG‑AATCA‑GC‑AAG‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATgcc < 2:498663/233‑1 (MQ=255)
tcccggggtcgggaaaTTCCCACCAGCATGGC‑GTTTAGGGGT‑GCGGG‑AATCA‑AC‑AAG‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATgcc < 2:1010759/225‑1 (MQ=255)
acccccACCGGCAGGGC‑GTTAAAGGTG‑GCGGA‑AACCA‑AC‑AGG‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGc < 2:209973/236‑1 (MQ=255)
caccaGCA‑GGG‑GGTTTAGGTTGGCGGG‑AACAA‑GC‑AAG‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc < 2:1115232/239‑1 (MQ=255)
cATGGC‑GGTTAAGGTG‑GCGGG‑AATCA‑GC‑ACG‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGAtgct < 2:981100/191‑1 (MQ=255)
ggttaaaGGTG‑GCGGG‑AAGCA‑GC‑AGC‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaaa < 2:398086/233‑1 (MQ=255)
cgtttAGGGTG‑GGGGA‑AATCA‑GA‑ACG‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaaa < 2:1124370/235‑1 (MQ=255)
cGGG‑AATCA‑GC‑AAG‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCTGCGCTCAAACTGAACTCTTTCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATg > 2:145511/1‑239 (MQ=255)
cGGG‑AATCA‑GC‑AAG‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATg > 2:334974/1‑239 (MQ=255)
g‑AACCA‑AC‑AAG‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGaa < 2:1151556/238‑1 (MQ=255)
aTCA‑GC‑AAG‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAgtg > 2:797070/1‑239 (MQ=255)
aTCA‑GC‑AAG‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAgtg > 1:818932/1‑239 (MQ=255)
|
TATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCAC‑GGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAA‑TTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTT‑GCGGG‑AATCA‑GC‑AAG‑CCCG‑CCAC‑TTTTA‑CCCG‑ATTTTCCGGTGC‑GGCAGTGAAGTACAT‑CGCTAAAGAAATGCCCA‑CGGCACCAAAGAT‑TTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAGTG > NC_000913/3862450‑3862906
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
