Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F17 I0 R1
|
115 |
121.7 |
2441348 |
96.4% |
2353459 |
231.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,862,672 |
G→A |
25.9% |
pseudogene (931/1617 nt) |
glvC ← |
pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,862,672 | 0 | G | A | 25.9%
| 42.8
/ 12.5
| 59 | pseudogene (931/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| Reads supporting (aligned to +/- strand): ref base G (19/22); new base A (11/2); total (33/26) |
| Fisher's exact test for biased strand distribution p-value = 2.38e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.54e-02 |
GGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AA‑GGTTGCGGG‑AATCAGC‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAG > NC_000913/3862439‑3862904
|
ggTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGAAACTT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TTAAA‑GGTTGC‑GG‑AATCAgacag > 1:764632/1‑234 (MQ=255)
catcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑TA‑GGGTGCGGG‑GATCAAC‑AAGCCCG‑cc > 1:402749/1‑238 (MQ=255)
tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AA‑AGTTTCGGG‑AATCAGC‑CAACCCC‑CCC‑C‑cttt > 1:209819/1‑239 (MQ=255)
gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AA‑GGGTGCGGG‑AAACAAC‑AAACCCC‑CCA‑C‑TTTTT‑cccc > 1:260670/1‑238 (MQ=255)
cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCCAACAGCAACGGCGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGAAATTCCCACCAGCATGGC‑GG‑GT‑AA‑GGGTGCCGG‑GATCCAC‑AAGCCCG‑CCA‑C‑ATTTA‑cccc > 2:1061460/1‑237 (MQ=255)
cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGCGGG‑TT‑AA‑GG‑TGCGGG‑GAACAAG‑AAGACCG‑CCC‑C‑tttttaccca > 1:1064912/1‑233 (MQ=255)
cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑GA‑GAGTTCTGG‑AAACAGC‑aaaactcccccactcacccca > 2:596831/1‑220 (MQ=255)
gatGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAACTT‑CCAGCGGTGCGGACATTCACACCAGCATGGCGGG‑AA‑AA‑AGTTGCGGG‑AAACAGC‑CAGCCCG‑CAC‑C‑ttttcaccgtgtt > 2:768914/3‑230 (MQ=255)
gCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑CT‑AAGGGTTGCGGG‑AAT‑ACC‑AAAACCC‑CCC‑C‑CTTTA‑TCCGCTTTTCCg > 1:430932/1‑239 (MQ=255)
tGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AA‑GGGTGGGGG‑GAACTGCAAAACCCC‑CCC‑T‑TTTTA‑CCGGATTTCCCgt > 1:1206568/1‑238 (MQ=255)
tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGCGGG‑GA‑AA‑GGTGCCGGG‑CAACACC‑AACCCCC‑CCC‑C‑TTTAC‑CCCGATTTTCCgtgccgcc > 2:442019/1‑232 (MQ=255)
cGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TTAAA‑GGTTCGGGG‑ATAAAAC‑AAACCGC‑CCC‑C‑TTTTA‑CCCATTTTTCTGGGGGGGcg > 1:142706/1‑238 (MQ=255)
gcaaagaaGTTTTGCGATAAAGCGTAGCGAATCACGCCCACGCCGGTGTTCCCCCCCACAAAGAAGAGAAAAAGCACGCGCGAGATTGAGGCCACGAGAAGGGCGTGTACCGAAAACGAAAGCGGTAAAATGAGGAGGAGGATAAATT‑CCATGGGTGCGGAATCCCCCACCAGCAGGGT‑GG‑TT‑AA‑GGTGGGGGA‑ATTCAGC‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCgg < 2:222549/228‑1 (MQ=255)
tCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AA‑GGGTGGGGG‑GATCAAC‑AAGACCG‑CCA‑C‑TTTTT‑CCCCATTTTTCGGTGCggggaggaag > 1:712708/1‑231 (MQ=255)
ttGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑TA‑GGGTTAGGG‑GATAAAG‑AAAACCG‑CCA‑A‑CTTTT‑CCCCATTTTCCGGGGCGGGCGGGAAGTaaacc > 1:595969/1‑234 (MQ=255)
tgcgcaaaaaCCTAGTCAATCAACCCCCCCCCCATGTCCCCCACCACACCAAAGAGAAACATTACGGACGACAATGGGGCCGCCACCACGGCGTGCACCGAAAGCAGCAACGGTAAAATGAAGAGGAAGGTAATTC‑CCAGCGGTTGGGTACCCCCCACCAGCAGGGG‑TG‑TT‑GA‑GGTGGGGGA‑AATAACC‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGc < 2:402749/233‑1 (MQ=255)
cGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AA‑GGTTGGGGG‑GATCAAC‑AAAACCC‑CCA‑C‑TTTTT‑ACCGGGTTTCCCGTGCGGGAGGGAAGTA‑CACCGccc > 1:926009/1‑237 (MQ=255)
cGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGGAATTCCCACCAGCATGGC‑GG‑TT‑AA‑GGGTGCGGG‑GATTAGC‑AAGCCCC‑CCA‑C‑TTTTA‑TCCCGTTTTCCGTTGCGGCatgggaagacaatccca > 1:347422/1‑223 (MQ=255)
tCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AA‑AGTTGCGGG‑GATCAGC‑AAGCCCC‑CCACC‑TTTTC‑CCCGTTTTTCC‑GTGCGGCCGTGAAGGA‑AAACGC‑TC‑AAGAA‑AAGCCCa > 1:785806/1‑238 (MQ=255)
ccgcggcgcgtGTTGCCCCCCACACAGAGGAGATAGATTGCGTTGCATGTTGGGGCCCCCATCGCGGGCTATGCCGCAAACAGAAGGGGGGAAGTGATCAGGAAGTGAAGTC‑CCAGCGGCGCGGTATGTCCCCCGAGCAGGGG‑TT‑TT‑AA‑GGTGGAGGA‑AATCAGC‑ATCCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCC‑CGGCG‑CCaa < 2:112315/228‑1 (MQ=255)
cGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AA‑AGTTGCGGG‑AATCAAC‑AAGCCCG‑CCA‑CATTTTA‑CCCGTTTTTCCGG‑GCGGCCGGGAAAGA‑CATAGC‑TA‑AAAAA‑AAACCCACCGGCA‑CAAAAGA‑t > 1:547921/1‑239 (MQ=255)
cGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AA‑AGATGGGGG‑GATCAGC‑AAACCCC‑CCC‑C‑CTTTA‑CCCCGTTTTTCGGTGCGGGAGTGGAGGA‑AAACGCGTA‑AGGAA‑AT‑CCCA‑Cgggccccaagcat > 2:291853/1‑228 (MQ=255)
cGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AA‑AGATGCGGG‑GATCAGC‑AAACCCC‑CCC‑C‑TTTTT‑CCCGATTTTTCCTGGGGGCAGGGAAGGA‑CATCGC‑CT‑AAGAA‑AAACCCC‑CCGCC‑CCCAAGaat > 1:1054497/1‑237 (MQ=255)
caccacaccaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AA‑AGGTTCGGG‑AATCAGC‑AAACCCA‑CCA‑C‑TTTTA‑CCCGATTTTTCGGTTGGGCAGTGGAGTA‑CAACAC‑TA‑AAAAA‑AAGCCCA‑CGGCT‑CCCAAGA‑CTTTTTAGGTaaccg > 1:1003611/1‑235 (MQ=255)
agagATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AA‑AGATGCGGG‑GAACCGC‑AAACACC‑CCACC‑TTTTA‑CCC‑ACTTTTCGGTGCGGGACGGAAAGA‑CAACCA‑CA‑AAGAA‑AACCCCA‑CAGCA‑CCCAAGACTTTTTGGGTACCTATC‑CAGGGCaaa > 2:1127342/1‑239 (MQ=255)
aTACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AA‑GGGTTCGGG‑AGACAGC‑AAACCCC‑CCC‑C‑CTTTA‑CCCCCTTTTCCGCTGGGGCAGGGCAGTA‑CAACCC‑CC‑AAGAACAACCCCC‑CGCCA‑CC‑AAGA‑CTTTTTTGGTACCATGCCGGGGCAAAAcc > 2:178141/1‑238 (MQ=255)
tACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AA‑AGGTTCGGG‑GAGCAGC‑AAGCCCGCCCC‑C‑TTTTA‑CCC‑AGTTTTTGGTGCGGCAGGGAAAGA‑AAACGC‑CC‑AAACA‑ATGCCCC‑CGGCC‑ACAAAAA‑TTTTTTAGTTAccagccaagagcaaaccgc > 2:265192/1‑221 (MQ=255)
tACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AA‑AGTTGCGGG‑GATCAAC‑AAACCCC‑CCC‑C‑TTTTA‑CCCGATTTTTCCGTGCGGGAGGGAAGAA‑CATCGC‑TA‑AAAAA‑ATGCCCC‑CGGCA‑CCAAAGA‑TTTTTGTGTTACCGCG‑CAGGGCaaaaaacccctccc > 1:1025253/1‑229 (MQ=255)
tACGGTCGACATTGAGGCCGCCAGCACGGCGTGGACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAAATCCCACCAGCATGGC‑GG‑AT‑AA‑GGTTGGGGG‑GATGCGC‑CAGCCCGCCCA‑C‑TTTAA‑CCC‑ATTTTACGGGGGGGGAGGGGAGGA‑CACTAC‑AACAAAAA‑AGCCCCA‑CGCCA‑CC‑AAGA‑GTTTTGAAAGACCGTG‑CGCGGAAAAAcacccctcac > 2:404026/1‑230 (MQ=255)
cGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAAGT‑CCAGCGGTTCGGTAATTCCCACCAGAATGGC‑GGATA‑AA‑GGTTCCGGA‑AAT‑ACC‑AACCGCC‑CCA‑C‑CTTTACCCCGCTTTTCTGGT‑AGGCGGTTTAATAGAATCGC‑AA‑AAGAA‑ATACAC‑‑CGGCACCCACGGA‑TTTTTGAGTTATC‑TT‑CCGGGCaaaaacacccctccgg > 2:503344/1‑227 (MQ=255)
tCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCAACAGCATGGCGGG‑TA‑AA‑GGTTGGGGG‑AAT‑AAC‑AAAACCC‑CCC‑C‑TTTTA‑CCCCATTTTTCGGGGCGGGGGGGGAGCA‑AATCGC‑TA‑AAAAA‑ATATCCA‑CCGCC‑CACCAGA‑GTTTTGTGGTACCGCG‑CAGGGCaaaaacacactcccgggac > 2:560639/1‑224 (MQ=255)
aCATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AA‑GGTTGCGGG‑GATCAGC‑AAGCCCC‑CCC‑C‑TTTTA‑CCCGATTTTTCGGTGCGGCAGGGGAGTA‑CATCGC‑TA‑AAGAA‑AAGCCCC‑CGGCA‑CCCAAGA‑TTTTTTGGTTAACGTG‑CAGGGGAAAACCGCCCTT‑CCGGaaaaa > 1:767567/1‑236 (MQ=255)
ccgccAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGCGGG‑TA‑AA‑GGTTG‑GGG‑AATCAGC‑AAACCCG‑CCC‑C‑CTTTA‑ACCGGTTTTTCGGGGCGGCAGGGAAGTA‑CATCGC‑TC‑AAAAA‑AAGCCCA‑CGGTC‑CCCAAGG‑TTTTTTGGGTAACGGG‑CAAGGCAAAAACC‑CCTTCCCGGGaaaaagcttttcgc > 2:1194356/1‑230 (MQ=255)
aaaaaCCGCAGCGGTAAAATGAAAGGAAAGTTAAATC‑CCAGCGGTTCGTTAATCCCCCCCAGCAGGGC‑GG‑TT‑AG‑GGTGGGGGA‑AATCAGC‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGaa < 1:47914/237‑1 (MQ=255)
cAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AA‑GGGTGCGGG‑GATCAGC‑AAGCCCG‑CCA‑C‑CTTTA‑CACGCTTTTCAGGGGCGGCAGTGAAGTA‑CATCGC‑TA‑AAAAA‑AAGCCCA‑CGGCA‑CCcaaaa > 1:1041919/1‑163 (MQ=255)
cAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AA‑AGGTGCGGG‑AATCAGC‑AAACCCC‑CCA‑C‑CTTTA‑ACCGATTTTTCGGTGCGGCAGTGAAGGA‑CACCGC‑CA‑AAAAA‑AATCCCC‑CGCCC‑CCCAAGA‑TTTTTTTGTTACCGTG‑CAGGGCAAAAACC‑CCCT‑CCGGGAACAAAGATTTTAGCGGCTCGGCGCGCAAAccgcac > 2:834236/1‑234 (MQ=255)
aaaCAGCAACGGTGAAGTGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATCCCCACCGGCATGGC‑GG‑TT‑AA‑GGGTGCGGA‑AATCAGC‑AGCCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAAct < 1:1127342/239‑1 (MQ=255)
aCAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AA‑GGTTGCGGG‑GATCAGC‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGGTTTTTCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCa > 1:183287/1‑158 (MQ=255)
aCAGCAACGGTAAAAGAAAAAGGAAGGAAAATC‑CCAGGGGTCCGGTAATCCCCCCCAGCTGGGC‑GG‑TT‑AG‑GGTGGCGGG‑AATCAGC‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAActct < 1:291853/239‑1 (MQ=255)
gAAAGGAACGGGAAGAAAAATT‑CCAGGGGTCCGGTTATTCCCACCAGCATGGC‑GG‑TA‑AA‑GGTGGGGGG‑AATCAGC‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGAtgct < 1:1106069/238‑1 (MQ=255)
aaaTAAACAGGAAGTAAAATT‑CCAGCGGTTCGGAAATCCCCACCAGCATGGC‑GG‑TA‑AG‑GGTTGCGGA‑AATCAGC‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGAtgct < 1:8900/237‑1 (MQ=255)
aataaCAGGAAAGTAAATTCCCGGCGGTCGGGTAATCCCAACCAGCAGGGC‑GG‑TA‑AG‑GGTTGCGGA‑AATCAGC‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTgcg < 1:660197/236‑1 (MQ=255)
tGAACGGGAGGTAAAATC‑CCAGGGTGTGGGTAATTCCCCCCAGC‑TGGC‑GGTTT‑AG‑GGTTGCGGA‑AACCAGC‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 1:768931/239‑1 (MQ=255)
tGAACAGGAATGAAAATC‑CCAGCGTTTCGATAATCCCCCCCAGCATGGC‑GT‑GT‑AA‑GGTTGGGGG‑AATCAAC‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 1:1194356/239‑1 (MQ=255)
aaCAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AA‑GGTTGCGGG‑AATCAGC‑AAGACCC‑CCA‑C‑TTTTA‑CCCGATTTTTCGGTGCGGCAGGGGAGTA‑CATCGC‑CA‑AAAAA‑AATCCCC‑CCGCA‑CCCAAAA‑TTTTTGAGGTACCGTG‑CAGGGCAAAAAAC‑CCTT‑CCGGGAACAACCATTTTAGCGGCCCGGGGCTCAAACGGAACTCtttccgcagcggggccc > 2:665205/1‑223 (MQ=255)
aGGAAGTAAATTT‑CCAGCGTTGCGGTAATCCCCACCAGCTGGGC‑GT‑TT‑AA‑GGTTGTGGA‑ACTCAGC‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTa < 1:106471/239‑1 (MQ=255)
atcccAGCGGTGCGTTACTCCCCCCCAGAAGGGC‑GG‑TT‑AG‑GGTTGCGGA‑AATCAGC‑ACGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATg < 1:740045/236‑1 (MQ=255)
ccagtggtttgtaacatCCCACCAGCAGGGC‑GG‑TC‑AG‑TGTGGGGGG‑AACAGGA‑AACCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATgccg < 1:768914/223‑1 (MQ=255)
ggacaccaccccacggcgggggg‑TT‑AA‑GGGTGGGGGTAACCGGC‑AACCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACa < 2:260670/218‑1 (MQ=255)
cccccgCATGGC‑GG‑TT‑AA‑GGTGGCGGG‑AACCAGC‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc < 1:665205/234‑1 (MQ=255)
cgagatgggC‑GG‑TT‑AA‑GGTTGCGGG‑AAGCAGC‑AGCCACG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCa < 1:657388/232‑1 (MQ=255)
ccaGCATGGC‑GG‑TT‑AA‑GGTTGCGGG‑AATCAGC‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCa < 1:721084/239‑1 (MQ=255)
ctctggcagggggttgagtgtggCGGA‑AATCAAC‑AACCCCG‑CCA‑C‑TTCTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc < 2:933716/217‑1 (MQ=255)
ccaggttgctg‑TT‑TA‑GGCTGGGGGAAATCAGA‑ACGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAATTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCa < 1:1182449/229‑1 (MQ=255)
ggC‑GG‑TT‑AA‑GGTGGCGGG‑AATAAGC‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATa < 1:442019/238‑1 (MQ=255)
c‑GG‑TT‑AA‑GGTTGGGGG‑AATCAGC‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaaa < 1:842811/238‑1 (MQ=255)
ggg‑TT‑AA‑GGTGGCGGA‑AATCAGC‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaaa < 2:1025253/237‑1 (MQ=255)
gg‑TT‑AA‑GGTTGCGGA‑AATCAGA‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAAc < 1:834236/238‑1 (MQ=255)
ggtGCGGG‑AACAACC‑AGCCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGt < 2:209819/236‑1 (MQ=255)
aaTCAGC‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAg < 1:86328/238‑1 (MQ=255)
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GGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AA‑GGTTGCGGG‑AATCAGC‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTA‑CATCGC‑TA‑AAGAA‑ATGCCCA‑CGGCA‑CCAAAGA‑TTTTTGAGTTACCGTG‑CAGGGCAAAACCG‑CCTT‑CCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAG > NC_000913/3862439‑3862904
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
