Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F9 I0 R1
|
142 |
103.7 |
2603848 |
81.8% |
2129947 |
227.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,149,812 |
G→T |
16.1% |
V29F (GTC→TTC) |
fabD → |
malonyl‑CoA‑[acyl‑carrier‑protein] transacylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,149,812 | 0 | G | T | 16.1%
| 124.6
/ 2.6
| 59 | V29F (GTC→TTC) | fabD | malonyl‑CoA‑[acyl‑carrier‑protein] transacylase |
| Reads supporting (aligned to +/- strand): ref base G (11/37); new base T (8/3); total (19/40) |
| Fisher's exact test for biased strand distribution p-value = 2.94e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ACCTCTGCGGCCTCTGTCCCGTGCGCGCTGGATGAAGCTGTACGCGACGGGCGCATTAAGCCGGGGCAGTTGGTTCTGCTTGAAGCCTTTGGCGGTGGATTCACCTGGGGCTCCGCGCTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCTGTTGACTGCATCTGTTGCGCTGT‑ATCGCGTATGGCAGCAGCAGGGCGGTAAAGCACCGGCAATGATGGCCGGTC‑ACAGCCTGGGGGAATACTCCGCGCTGGTTTGCGCTGGTGTGATTGATTTC > NC_000913/1149581‑1150048
|
aCCCCTGCGGCCTCTGTCCCGTGCGCGCTGGATGAAGCTGTACGCGACGGGCGCATTAAGCCGGGGCAGTTGGTTCTGCTTGAAGCCTTTGGCGGTGGATTCACCTGGGGCTCCGCGCTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCgaaga < 2:262029/239‑1 (MQ=255)
ctGCGGCCTCTGTCCCGTGCGCGCTGGATGAAGCTGTACGCGACGGGCGCATTAAGCCGGGGCAGTTGGTTCTGCTTGAAGCCTTTGGCGGTGGATTCACCTGGGGCTCCGCGCTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGGGGGCA‑TTCCAATTTTCCAAGaaaag > 2:1224443/1‑237 (MQ=255)
ctGCGGCCTCTGTCCCGTGCGCGCTGGATGAAGCTGTACGCGACGGGCGCATTAAGCCGGGGCAGTTGGTTCTGCTTGAAGCCTTTGGCGGTGGATTCACCTGGGGCTCCCCGCTGGTTCGTTTCTAGGATAAGGCTTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCGGATATGGCGGGGCGCT‑ATCCAATTGTTGaaaaaaag > 1:1291094/1‑237 (MQ=255)
tGCGGCCTCTGTCCCGTGCGCGCTGGATGAAGCTGTACGCGACGGGCGCATTAAGCCGGGGCAGTTGGTTCTGCTTGAAGCCTTTGGCGGTGGATTCACCTGGGGCTCCGCGCTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGGGCT‑ATCCAATTGTCGAAGaaaaga > 2:439097/1‑236 (MQ=255)
gCGGCCTCTGTCCCGTGCGCGCTGGATGAAGCTGTACGCGACGGGCGCATTAAGCCGGGGCAGTTGGTTCTGCTTGAAGCCTTTGGCGGTGGATTCACCTGGGGCTCCGCGCTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGGGCT‑TTCCAATTTTCGACGaaaactt > 2:1074299/1‑235 (MQ=255)
gCGGCCTCTGTCCCGTGCGCGCTGGATGAAGCTGTACGCGACGGGCGCATTAAGCCGGGGCAGTTGGTTCTGCTTGAAGCCTTTGGCGGTGGATTCACCTGGGGCTCCGCGCTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGGT‑ATTCAATTGTGGAAGAAAAGtt > 2:243744/1‑239 (MQ=255)
gTCCCGTGCGCGCTGGATGAAGCTGTACGCGACGGGCGCATTAAGCCGGGGCAGTTGGTTCTGCTTGAAGCCTTTGGCGGTGGATTCACCTGGGGCTCCGCGCTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGc < 2:1288535/239‑1 (MQ=255)
gTGCGCGCTGGATGAAGCTGTACGCGACGGGCGCATTAAGCCGGGGCAGTTGGTTCTGCTTGAAGCCTTTGGCGGTGGATTCACCTGGGGCTCCGCGCTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGGTATGGCGGCGAGCG‑ATCCCATTGTGGAAGAAACGGTTTCTGAAGCTTTTg > 2:490746/1‑239 (MQ=255)
tGCGCGCTGGATGAAGCTGTACGCGACGGGCGCATTAAGCCGGGGCAGTTGGTTCTGCTTGAAGCCTTTGGCGGTGGATTCACCTGGGGCTCCGCGCTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGGGCT‑ATCCACTTTTCGCAGAAACGGTTTCTTGAGCTTTTgc > 2:1041568/1‑239 (MQ=255)
tGCGCGCTGGATGAAGCTGTACGCGACGGGCGCATTAAGCCGGGGCAGTTGGTTCTGCTTGAAGCCTTTGGCGGTGGATTCACCTGGGGCTCCGCGCTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGGC‑CTCCAAATTTTgaagaacacgtgttggaaaatctttc > 2:1279291/1‑219 (MQ=255)
gggtGGATGAAGCGGTGCCCAGCGGGCGTCTAAACCCGGGTCAGTTGGTGTGGTTTGAAGCCTTTGGCGGTGGATTCCCCTGGGGCTCCGCGCTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTg < 1:968715/231‑1 (MQ=255)
tGGATGAAGCTGTACGGGGAGGGGGGATTAAGCGTGGGTGTGTGGTTCTGCTTGAAGCCTTTGGCGGTGGATTCACCTGGGGCTCCGCGCTTGTTCGGTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCt < 1:172406/238‑1 (MQ=255)
gtggtgaaggtggtccgggcGGGCGGATTAAGCCGGGCGAGTTGGTTCTGCTTGAAGCCTTTGGCGGTGGATTACCCTGGGGCTCCGCGCTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCCGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCt < 1:145220/219‑1 (MQ=255)
tgtcgtgtgccggtgtggCGCATTCAGTCTGTGCACTTGGCTCTGGCTGAACCCTGTGGCGGTGTATTCCCCTGGGGCCTCGGGTCTTTGCGTTTCTAGGATAAGGATTCAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAATCCGTTGGAATTCTGGCTGATATGGCGGCGAGCT‑ATCCCATTGTGGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGGTa < 1:131791/223‑1 (MQ=255)
gaagttgtagtggaggggCGAATTAAGCCGGGGCAGTTGGTTCTGCTTGAAGCCTTTGGCGGTGTATTCACCTGGGGCTCCGCGCTGGTTCTTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTa < 1:840964/224‑1 (MQ=255)
aGCTGTACGCGACGGGCGCATTAAGCCGGGGCAGTTGGTTCTGCTTGAAGCCTTTGGCGGTGGATTCACCTGGGGCTCCGCGCTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGGGCT‑ATCCAATTTTTGCAGAAAAGGTTGCTGAAGCTTCTGAGGCCGTggggccgg > 2:968715/1‑234 (MQ=255)
cgcgcggggcctactAAGGCGGGGCAGTTTGTTCTGCTTGAAGCCTTTGGCGGGTGATTCACCTGGGGCTGCGCGCTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAAGTTGCATTTGTGTTCCCTGGACAGGGTTCGCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCtgtg < 2:1124458/225‑1 (MQ=255)
gACGGGGTCGTTAAGCCGGGGTTGTTGGTTTGGTTGGAGGCCTTTGGGGTTGGCTTCACCTGGGGCTCCGCGCTGGTTGGGTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGgc < 1:712123/239‑1 (MQ=255)
gACGGGCGCATTAAGCCGGGGCAGTTGGTTCTGCTTGAAGCCTTTGGCGGTGGATTCACCTGGGGCTCCGCGCTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAAACGTTGGAATGCTGGCTGATATGGCGGCGAGGT‑ATCCAATTTTTGAAGAAACGTTTGTTTGAGCTTCTGAGGCGGTGGGGTATGACCTGTgggg > 2:552682/1‑238 (MQ=255)
aCGGGCGCATTAAGCCGGGGCAGTTGGTTCTGCTTGAAGCCTTTGGCGGTGGATTCACCTGGGGCTCCGCGCTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGGGCT‑ATCCAATTTTCGCAGAAACGTTTGCGTAAGCTTCTGCGGCGCCGGGCTACGACCTTTggggg > 2:281088/1‑237 (MQ=255)
cgtaTTAGGCCGGGGCTGTTGTTTCTGCTGGGAGCCTTTGGGGGTGGATTCACCTGGGGCTCGGCGCTGGTTCGTTCCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGa < 1:281088/235‑1 (MQ=255)
tgatgcgtggtctgtGGTTCTTCTTGAAGTCTGTGGCTGTGGATTCACGTGGGGACGCGGGTGGGTTCGTTTCAAGGATAAGGATTAAAACATGACGCAATTTGCATGTGTGTTCACTGGACTGGGTTCTCAAACCGGTGGAATGCTGGCTGATATGGCGGTGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCcagc < 1:1022125/225‑1 (MQ=255)
cGGGGGAGTTGGTTCTGGTTGAAGCCTTTGGCGGTGGATTCACCTGGGGCTCCGCGGTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAggg < 2:92904/238‑1 (MQ=255)
ggCAGTTGGTTCTGCTTGAAGCCTTTGGCGGTGGATTCACCTGGGGCTCCGCGCTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGcc < 2:1226556/238‑1 (MQ=255)
tttttttttgagtgttgggCGGGGGATTCACCTGTGGCTCCGCTCTGGTTCGTTTCTAGGATAAGGATTAAAGCAGGACGCAATTTGCATGTGTGTTCCGTGGGCAGGGTTCTCATACCGGTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGACGAAACGTTTGCTGAAGCTTCTGCGGCGCTTGGCTACGACCTTTGGGCTCTGACCCAGAAGGGGCCAGCTgaagaa < 1:971912/222‑1 (MQ=255)
tccgCTTGAAGCCTTTGGCGGTTGATTCACCTGGGGCTCCGCGCTGGTTCGTTTCTAGGGTAAGGATTAAATCATGACGCAATTTGCATTTGGGCTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAACCGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGTCCTGTGGGCGCTGACCCAGCAGGGGCCAGCTgaagaa < 2:278340/235‑1 (MQ=255)
cTTGAAGCCTTTGGCGGTGGATTCACCTGGGGCTCCGCGCTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCCATTGTTGAAGAAACGTTTGCTGAAGCTTCTGCGGGGCTGGGCTACGACCCGTGGGGGCTGACCCAGCCGGGGGCAGCTGAAGAACTTaa > 2:1185149/1‑239 (MQ=255)
tGGATTCACCTGGGGCTCCGCGCTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACt < 2:1100103/238‑1 (MQ=255)
cACCTGGGGCTCCGCGGTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTg < 2:398399/239‑1 (MQ=255)
gggCTCCGCGCTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAAAGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACACAGCAGGGGCCAGCGGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCGGt > 2:893027/1‑239 (MQ=255)
ggggtGGTTCGTTTCTAAGATAAGGATTAAAACATGGCGCAATTTGCATTTGTGGTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCTGTTGACTGc < 2:129448/235‑1 (MQ=255)
ctgttGGTTCGGTTATTGGATAAGGATTAAAACATGACGCAATTTGAATTTGTGTTCCCTGGACAGGGGTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCTGTTGACTGc < 1:1224443/235‑1 (MQ=255)
gttGGTTCGTTTCTTAGATAAGGATTAAAACATGACGCAATTTGGATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCTGTTGACTGCAt < 2:1140513/237‑1 (MQ=255)
tCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGGGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGAGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCTGTTGACTGCATCTGtt < 2:1276847/238‑1 (MQ=255)
ttttcgtgtaTAAGTATTAAAACTTGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAATCCGTTGGATTGCGGGCTGTTATGGCGGCGAGCT‑ATCCAATCTTCGAAGAACCGTTTGCTGAAGCTTCTGCGGCGCGGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCTTGCGCTGTTGACTGCATCTGTTgcg < 1:1279291/230‑1 (MQ=255)
gTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCTGTTGACTGCATCTGTTgcg < 2:24801/239‑1 (MQ=255)
agacagaGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCCTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCTGTTGACTGCATCTGTTgcg < 2:751366/233‑1 (MQ=255)
ttCTAGGTGAAGGATTAAAACTTGCCGCAATTTGATTTTGTGTCCCGTGGACAGGGTTCCAAAACCGTTGGAATGCTTGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGGTGGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCTGTTGACTGCTTCTGTTGCGCt < 1:1074299/239‑1 (MQ=255)
gATAAGGATTAAAACATGCCGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCTGTTGACTGCATCTGTTgcg < 2:411052/231‑1 (MQ=255)
ttAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCTGTTGACTGCATCTGTTGCGCTGT‑ATCGCGTATGgc < 2:1237163/239‑1 (MQ=255)
ttAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCTGTTGACTGCATCTGTTGCGCTGT‑ATCGCGTATGgc < 2:1186456/239‑1 (MQ=255)
tgccGCACTTTTCTTTTTTGTTCCCGGGACTGGGTTCTCAAACCGTTTGAAGGCTGGCTGATATGGCGGCGAGCT‑ATCCAAGTGTCGAAGAAACGGTTGCTGAAGCTTCTGAGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAATCCTGGCAAACTCAGCCTGCGCTGTTGACTGCATCTGTTGCGCTGT‑ATCGCGTATGGcagcagcag < 1:1185149/236‑1 (MQ=255)
gttcgcgATTTGCTTTTTGTTTTCCTGGACCGGGTTCTCAACGCGTTGGGATGTGGGCTGCGTGTGCGGCGAGCT‑AGCCAATTGTAGAAAGAACGTTGGCCGAAGGTTCTGCGGCGGTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCTGTTGACTGCATCTGTTGCGCTGT‑ATCGCGTATGGcagcagcag < 1:1223958/236‑1 (MQ=255)
ccgacaTTTTCCTTTTTTTTCCCTGGGCCGGGTTCTCAAACCGTTGGAATGGTGGTTGATATGGCGGCGAGCT‑ACCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGTTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCTGTTGACTGCATCTGTTGCGCTGT‑ATCGCGTATGGCAGCAGCAggg < 1:552682/234‑1 (MQ=255)
tttGCATTTGTGTTCCCTGGACAGGGTTCTCACACCGTTGGAATGCTGGCTGATATGGCGGCCAGCT‑ATCAAATTTTCGAAGAAAAGTGTGCTGAAGCTTCTCCGGCCCCCGCCTACCGCCTTGCGGTCCCGTCCCAACCAGGGCCATCTGAAGTACTGAGTTAAACCTCGCACACTCTACCAGCGCGCTGGAGTGCACCTATTGCGCTTT‑GTCCCGCATGgcacgcttcggggggcac > 1:210564/1‑224 (MQ=255)
ggTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGATTTCTGAAGCTTCTGAGGCGCTGGGCTGCGACATGTGGGGGCTGACCCCGCAGGGGCCCCCTGAAGAACAGAATAAAACCTCGCCAACTCCGCCCGCGCTGTTGGCTGCATCTGTTTGTCTGTAATCGCG‑AAGGCAGCCACAGGGCGGTAAAGAACCAGCCAAGATGGCGGGTc‑a > 1:1038844/1‑239 (MQ=255)
tttCTCTAACCGTTGGAATGCTGGTTGGT‑TGGGGGGGGGATGTTCCAATTTTCGAAGAAACCGTTCTAGAAGCTGCTGCAGGCCTGGGCTAAGGACTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGCACTGAATAAAACCTGGCAAACTCGGCCTGCGCTGTTGACTGCATCTGTTGCGCTGT‑ATCGCGTATGGCAGCAGCAGGGCGGTAAAGCACCGGCAATGATGGCCGGTc‑a < 1:603583/237‑1 (MQ=255)
gTTCTCAAACCGGTGGAATGCTGGCTGATATGGCGGCGAGCT‑TTCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCTGTTGACTGCATCTGTTGCGCTGT‑ATCGCGTATGGCAGCAGCAGGGCGGTAAAGCACCGGCAATGATGGCCGGTc‑a < 2:512885/238‑1 (MQ=255)
gTTCCCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCTGTTGACTGCATCTGTTGCGCTGT‑ATCGCGTATGGCAGCAGCAGGGCGGTAAAGCACCGGCAATGATGGCCGGTc‑a < 2:1291094/238‑1 (MQ=255)
tcAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGGCAGCTGAAGAACTGAATAAAACCTGGCCAACTCAGCCTGCGCTGTTTACTGCATCTGTTGGGCTGG‑ATCGCGGATGGCAGCAGCAGGGCGGGAAAGAACCGGCAATAGTGGTCgggccaagcc > 2:98356/1‑231 (MQ=255)
ccctgccGTTGGAATTGTGGGTGAGTGGGCGGCGATCT‑TTCCAATTGTCGAAGAACCGTTTGCTGAAGGTTCTGGGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGGAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCTGTTGACTGCATCTGTTGCGCTGT‑ATCGCGTATGGCAGCAGCAGGGCGGTAAAGCACCGGCAATGATGGCCGGTC‑ACAGcc < 1:439097/234‑1 (MQ=255)
tGGAATGCTGGCTGATATGGCGGCGAGGT‑ATCCAATTGTCGAAGAAACGGTTGCTGAAGCTTCTGCGGCGCTGGGCTCCGACCCGTGGGCGCTGACCCAGCAGGGGCCCGCTGAAGCACTGCATAAAACCCGGCAACATCAGCCCGCGCCGTTGACTGCATCTGTTGCGCCGT‑ATTGCGGATTGCAGCGGCAGGGCGGTGAAGCAACGGGGACGAGGGCCGGGC‑ACCGCCCgggggggt > 1:743439/1‑236 (MQ=255)
tgtagggcggtcggCT‑TTCCAATTGTCGAAGAACCGTTTGCTGGAGCTTCGGCGGCGCTGGGCTACGACCTGGGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCTGTTGACTGCATCTGTTGCGCTGT‑ATCGCGTATGGCAGCAGCAGGGCGGTAAAGCACCGGCAATGATGGCCGGTC‑ACAGCCTGGGGGAATACTCCGCGCTGGt < 1:243744/226‑1 (MQ=255)
gATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCTGTTGACTGCATCTGTTGCGCTGT‑ATCGCGTATGGCAGCAGCAGGGCGGTAAAGCACCGGCAATGATGGCCGGTC‑ACAGCCTGGGGGAATACTCCGCGCTGGt < 2:33727/239‑1 (MQ=255)
atatGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCTGTTGACTGCATCTGTTGCGCTGT‑ATCGCGTATGGCAGCAGCAGGGCGGTAAAGCACCGGCAATGATGGCCGGTC‑ACAGCCTGGGGGAATACTCCGCGCTGGt < 2:520146/238‑1 (MQ=255)
gggggcgggttttCCAATTTTGGGAGAGTCGTGTGCGTAAGCTTCGGGGGGGCTGGGCTTCGACCTGTGGGCGCTGGCCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGGGCTGTTGACTGCATCTGTTGCGCTGT‑ATCGCGTATGGCAGCAGCAGGGCGGTAAAGCACCGGCAATGATGGCCGGTC‑ACAGCCTGGGGGAATACTCCGCGCTGGTTTgcg < 1:1041568/227‑1 (MQ=255)
cggcgAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCTGTTGACTGCATCTGTTGCGCTGT‑ATCGCGTATGGCAGCAGCAGGGCGGTAAAGCACCGGCAATGATGGCCGGTC‑ACAGCCTGGGGGAATACTCCCCGCTGGgtttg > 2:983984/1‑234 (MQ=255)
gAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCTGTTGACTGCATCTGTTGCGCTGT‑ATCGCGTATGGCAGCAGCAGGGCGGTAAAGCACCGGCAATGATGGCCGGTC‑ACAGCCTGGGGGAATACTCCGCGCTGGTTTGCGCTGgt < 2:792940/238‑1 (MQ=255)
ttGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGCGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCCGCCTGCGCTGTTGACTGCATCTGTTGCGCTGG‑TTCGCGAATGGCGGCAGCAGGGCGGTAAACCACCGGCAATGTTGG‑CGCTCGACAGCCTGGGGTAATACTCCGCGCTGGTTTACGCTGGTGCGATTGGTTTc > 1:972248/1‑239 (MQ=255)
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ACCTCTGCGGCCTCTGTCCCGTGCGCGCTGGATGAAGCTGTACGCGACGGGCGCATTAAGCCGGGGCAGTTGGTTCTGCTTGAAGCCTTTGGCGGTGGATTCACCTGGGGCTCCGCGCTGGTTCGTTTCTAGGATAAGGATTAAAACATGACGCAATTTGCATTTGTGTTCCCTGGACAGGGTTCTCAAACCGTTGGAATGCTGGCTGATATGGCGGCGAGCT‑ATCCAATTGTCGAAGAAACGTTTGCTGAAGCTTCTGCGGCGCTGGGCTACGACCTGTGGGCGCTGACCCAGCAGGGGCCAGCTGAAGAACTGAATAAAACCTGGCAAACTCAGCCTGCGCTGTTGACTGCATCTGTTGCGCTGT‑ATCGCGTATGGCAGCAGCAGGGCGGTAAAGCACCGGCAATGATGGCCGGTC‑ACAGCCTGGGGGAATACTCCGCGCTGGTTTGCGCTGGTGTGATTGATTTC > NC_000913/1149581‑1150048
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
