Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F9 I0 R1 142 103.7 2603848 81.8% 2129947 227.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,860,855 A→C 11.0% T192P (ACT→CCT)  yidL → AraC family putative transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,860,8550AC11.0% 336.1 / 2.4 151T192P (ACT→CCT) yidLAraC family putative transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base A (72/55);  new base C (5/15);  total (77/74)
Fisher's exact test for biased strand distribution p-value = 1.44e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 154 total aligned reads displayed.

GGAATTTACCCCCACCAGTATGATGGATATTCCCGTTGGTCAGCAAAGCGTTATTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGGCGCTATCGCTATTAAAGCAACAAGGAAACTCGGTTGGCGAAGTCGCTGATACGCTCAACTTCTTCGACTCCTTTCATTTCAGCAAAG  >  NC_000913/3860617‑3861089
                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                          
tgaATTTACCCCCCCCAATAAGTTTGAATGTCCCGTTGGTCAGGAAAGCGTTATTTATAATGGCAAAATTTAAAATC‑AGGAACTAACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GGCGCTTGTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCa                                                                                                                                                                                                                                            <  1:1001119/238‑1 (MQ=255)
tgaATTTACCCCCACCAGTATGATGGAAATTCCCGTTGGTCAGCAAAGCGTTATTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCa                                                                                                                                                                                                                                            <  2:588612/238‑1 (MQ=255)
ggaATTTACCCCCACCAGTATGATGGATATTCCAGTTGGTCAGCAAAGCGTTATTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCa                                                                                                                                                                                                                                            <  2:474809/239‑1 (MQ=255)
  aaTTTACCCCCACCAGTGTGATGGATATTCCCGTTGGTCAGCAAAGCGTTATTTATAATGGCGCAATTTATAATC‑CGGACCTCACCGAAGTTGCTGAGTTCATACCTTCACCTGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGCAAATTATTTATCAGTGGATTTG‑TCTTATGTCTGCCGCTGGTAAAAAAGATCCCCAACGGCGGTAATTTGAAAAATAAATTGCCCCt                                                                                                                                                                                                                                          >  1:588612/1‑239 (MQ=255)
  aaTTTACCCCCACCAGTATGATGGATATTCCCGTTGGTCAGCAAAGCGTTATTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAACAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTTTCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCACAAACGTCGGCCAATTGAAAAATAAATTGCCACt                                                                                                                                                                                                                                          >  2:502163/1‑239 (MQ=255)
  aaTTTACCCCCACCAGTATGATGGATATTCCCGTTGGTCAGCAAAGCGTTATTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCCAAACGGCGGCAAATTGAAAAATTAATTGCCACt                                                                                                                                                                                                                                          >  2:451888/1‑239 (MQ=255)
  aaTTTACCCCCACCAGTATGATGGATATTCCCGTTGGTCAGCAAAGCGTTATTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACt                                                                                                                                                                                                                                          >  2:118170/1‑239 (MQ=255)
       ccccccACCAGTATGATGGATATTCCCGTTGGTCAGGAAAGCGTTATTTATAATGGCCAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACa                                                                                                                                                                                                                                     <  2:53561/238‑1 (MQ=255)
          cctgcatggttgtgagATTTTCCCGTTGGTCACAAAAGCTTTATTTAAAATGGGAAAATTGAAAAAC‑AGGACATCACCGAAGTGGCTGATTTAATACTTGCACCAGAGGCAATAAAAAAGAATCTGGCA‑TTCGCTTTTCTAACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGAAGATGGTAAAAAAGATCCACAACGGCGGCAAATTTAAAACTTAATTGCCCCTTTACATGc                                                                                                                                                                                                                                  <  1:992600/224‑1 (MQ=255)
            caccaGTATGATGGATATTCCCGTTGGTCAGCAAAGCGTTATTTATAATGGCGAAGTTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAACTAATCTGCCA‑GTCGCTTTTCTGACGACAATTATTTATAAGCGGATTTT‑GCTTAGGTACGCAGATGGCAAAAACGATCAACAACGGCGGCAAATTGAAAAATTAATTGACACtataaagcccc                                                                                                                                                                                                                                >  1:2043/1‑232 (MQ=255)
            caccaGTATGATGGATATTCCCGTTGGTCAGCAAAGCGTTATTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCCCTTTACATGCCa                                                                                                                                                                                                                                >  2:841324/1‑239 (MQ=255)
            caccaGTATGATGGATATTCCCGTTGGTCAGCAAAGCGTTATTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCa                                                                                                                                                                                                                                >  2:75255/1‑239 (MQ=255)
            caccaGTATGATGGATATTCCCGTTGGCCAGCAAAGCGTTATTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCa                                                                                                                                                                                                                                <  2:373316/239‑1 (MQ=255)
            caacaGTATGATGGATTTTCCCGTTGGTCAAAAAAGGTTTATTTAAAATGGGAAAATTTATAAAC‑AGGAACTCACCGAAGTTGCTTAGTTAATAACTTCACCAGAAACAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCa                                                                                                                                                                                                                                <  1:859264/236‑1 (MQ=255)
                  tATGATGGATATTCCCGTTGGTCAGCAAAGCGTTATTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGc                                                                                                                                                                                                                                  >  1:287938/1‑231 (MQ=255)
                  tATGATGGATATTCCCGTTGGTCAGCAAAGCGTTATTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGc                                                                                                                                                                                                                                  <  2:287938/231‑1 (MQ=255)
                    tgatgGAAATTCCCGGTGGTCAGCAAAGCGTTATTTAAAATGGCGAAATTTAAAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑TGCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGcaa                                                                                                                                                                                                                        <  2:1291289/239‑1 (MQ=255)
                    gggtggaatatCCCTTTGGTCCGGAAAGGTTTAATTACAAAGGGGAAATTTATAAAC‑AGGAACTCACCGAAGTTGCTGAGTTAATAAATTTACAAGAAGAAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGGGGATTTG‑TCTTATTTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGcaa                                                                                                                                                                                                                        <  2:385673/229‑1 (MQ=255)
                       tgGATATTCCCGTTGGTCAGCAAAGCGTTATTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAACTAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTACTTGCCACTTTACATGCAAATCTGcacca                                                                                                                                                                                                                      >  2:1062401/1‑238 (MQ=255)
                            tttCCTGTTGGTCACAAACGCTTTATTTTTAATGGGGAAATTTTTAACA‑AGGAACTCACCGAATTTGCTGAGTATATAACTTCACAAGAAGCAATAAAAAATAATCTGGAA‑GGCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTg                                                                                                                                                                                                                <  1:451888/238‑1 (MQ=255)
                            atTCCCGTTGGTCAGCAAAGCGTTATTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATACAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATAAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGACGGCAAATTGTAAAATTAATTGCACGTTTACATGCCAGCCTGCACCAACGCTg                                                                                                                                                                                                                >  2:827005/1‑239 (MQ=255)
                            atTCCCGTTGGTCAGCAAAGCGTTATTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTg                                                                                                                                                                                                                >  2:360156/1‑239 (MQ=255)
                            atTCCCGTTGGTCAACAAAGCGCTAGTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTGTCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGAA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCTACAAGGGCGGCCAATTGAATAATTAATTGACACTTTACATGCCaacgtgacaaaacacag                                                                                                                                                                                                                >  1:215552/1‑223 (MQ=255)
                              tCCCGTTGGTCAGCAAAGCGTTATTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTgag                                                                                                                                                                                                              >  2:67390/1‑237 (MQ=255)
                                ccGTTGGTCAGCAAAGCGTTATTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCACCAACGCTGGAGc                                                                                                                                                                                                            >  2:14870/1‑239 (MQ=255)
                                   tttttccacAAAGTGTTTTTTATAATTGCGAAATTTATAATC‑AGGAACCCCCCGAAGTTGCTTAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTa                                                                                                                                                                                                         <  1:75255/231‑1 (MQ=255)
                                   ttGGTCAGCAAAGCGTTATTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCATAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGGGGATTTT‑CCTTATGTACGCAGATGGTAAAAAAGATCACCAACGGCGGCAAATTGAAAAATTAATTTCCACTTAACATCCCATACCACAAAAACCCTGGAgagaa                                                                                                                                                                                                         >  1:162919/1‑235 (MQ=255)
                                   ttGGTCAGCAAAGCGTTATTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAATAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTTTGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGACACTTTACATACCAACCTGcacaaaaacggaaaggca                                                                                                                                                                                                         >  1:218410/1‑223 (MQ=255)
                                   ttGGTCACAAAAGGGTTTTTTTAAATGGGAAAATTTTAAAAA‑AGGAACCCACCCAAGTTGCTAAGTTAATAACTTCCCCAGAAGCATTAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAGCGGCGGAAAATTGAAAAATTAATTGCCCCTTTACATGCCAGTCTGCAACAACGCTGGAGCGTa                                                                                                                                                                                                         <  1:1076421/239‑1 (MQ=255)
                                    ttgtgtcacaaaggTTTTTTTTAAAGGGGAAAATTTTAAACTAGGAACCACCCGAAGTTGGTGAGTTAATAACTTCAACAGAAGCAATAAAAAATAATCCGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCAAAACGGCGGCAAATGGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTa                                                                                                                                                                                                         <  1:841324/226‑1 (MQ=255)
                                     ggTCAGCAAAGCGTTATTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCACGTCTGCAAAAACGcggaagagaaga                                                                                                                                                                                                       >  1:646352/1‑228 (MQ=255)
                                        cAGCAAAGCGTTATTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATCATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGGACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCAACTTTACATGCCAGACTTCaaaaaccaggggaggtaggtga                                                                                                                                                                                                    >  1:1225760/1‑223 (MQ=255)
                                            aaaGCGTTATTTATAATGGCGAAATTTAAAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCCCCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGat                                                                                                                                                                                                   <  2:1213162/236‑1 (MQ=255)
                                              agggTTTTTTATAAGGGAGAAATTTAAAAAT‑AGGAACTCACCGAAATTGTTGAGTTAATAACCTCAACAGAAGCAATAAAAAATAATCTGGCG‑GTCGCTTTTCGGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCAAAACGGCGGCAAATTAAAAAACTAATTGCCCCTAGACATGCCAGTCTGCACCAACGCTGGCTCGTAGCAGataatgc                                                                                                                                                                                              <  1:1177885/236‑5 (MQ=255)
                                                cGTTATTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCt                                                                                                                                                                                             >  2:49169/1‑238 (MQ=255)
                                                  tttattaaAAGGGCGAAATTTAAAATC‑AGGAACTCACCGAAGTTGCTTAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTg                                                                                                                                                                                            <  2:647234/233‑1 (MQ=255)
                                                     tttttAATGGACAAATTTAAAATC‑AGGAACCCACCGAAGTTGCTTGTTTAAAAACTTCACCAAAAGATATAAAAAATAATC‑GGCACGTCGCTTTTCTGTCGAAAATTATTCTCCAGTGGATTTT‑GCTTTTGGTCGCACATTGTAAAAAAGCTCCACAACGGCGGCAAATTGAAAAATTACTTGCCCCTTTCAATTCCAGTCTGCAACTACGCTGGAGCGTAGCTGATATGGCTGCCACg                                                                                                                                                                                       <  1:663828/239‑1 (MQ=255)
                                                          aaTGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGTTAAAAAAAATCCACAACGGCGGCAAATTGGAAAATTAATTGCCACTTTACATGCCCATCTGCAACAACGATGGAGGAGAGATGATATGGCtcacaagaaca                                                                                                                                                                                   >  1:199522/1‑228 (MQ=255)
                                                          aaTGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATcc                                                                                                                                                                                   >  2:406152/1‑238 (MQ=255)
                                                            aggCGAAATTTTAAAAC‑AGGAAACACCCGATGTTGTGGATTTAAATACTTCCCCAAAAACAAAAAAAAATAATGTGGCG‑GGGCTTTTTCTGAAAAAAAATATTTTTCAGGGGATTTG‑TCTTATGTAGGCGGAGGTTAAAAAAGATCATCAACGGCGGAAAATTGAAAAAGTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCt                                                                                                                                                                                <  1:782615/238‑1 (MQ=255)
                                                               cGACATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTAACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTCTTTATCAGTGGATTTG‑TCTTATGTACGCAGAGCGTAAAAATGTTCAACAACGGAGGCACATTAAAAAATTAATTGGCACATTACATGACAAGCGCCAACAAACCTGGAACGGAGCTGaaaaagcacacacgagacccaaca                                                                                                                                                                             >  1:628830/1‑216 (MQ=255)
                                                               cGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAACTTAATTGCCACTTTACATCCCAGCCTGCAAAAACGCTGGGGCGGAACTGTAATGGATTCCACAATCCCCTgga                                                                                                                                                                             >  1:497452/1‑237 (MQ=255)
                                                               cGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACt                                                                                                                                                                                                                                          >  2:898111/1‑178 (MQ=255)
                                                               cGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTCCATGCCAGACTGCAACAAAGCTGGAGCGAAGCTGATATGGCTACGACGGTACCCTGTa                                                                                                                                                                             >  2:225599/1‑239 (MQ=255)
                                                               cGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTAAATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTa                                                                                                                                                                             >  2:1184972/1‑239 (MQ=255)
                                                                  atttttTAATC‑CGGAACTACCCGAGGTTGTTGGGTTAATAACTTCAACAAATGCAATAAAAAATAATTTGGCA‑GTCGCTTGTCTGACAAAAATTATTTATCAGTGGATTTA‑TCTTATGTACGCAGATGGTAAAAAAGATCCCCAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCg                                                                                                                                                                          <  1:165481/237‑1 (MQ=255)
                                                                                  acctactgtggTTGATTAGTTAATAATTTCACAAGAAACAAAAAAAAATAATCTGGCA‑GGCGCTTTTCTAACGAAAATTAGTGAAAATTGGATTGG‑TCTTATGTACGCAGATGGTAAAAAAGACCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGcg                                                                                                                                                             <  1:225599/227‑1 (MQ=255)
                                                                                     tcccggttttttttatttAATAACTTCCCAAAAAACAATAAAAAAAAATCTGGCA‑GTCGCTTTTCTGAAGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCgtcgtc                                                                                                                                                        <  1:1083164/223‑1 (MQ=255)
                                                                                     ccccGAAGTTGGTAGATTAAAAAATACACAAGAAACAAGAAAAAAAAATCTGGAC‑GTCTGTTGTCGGACAAAAATTATTTATCAGTGGATTTT‑TCTTATGTCGGAAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATGGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCgtcgtc                                                                                                                                                        <  1:1091170/237‑1 (MQ=255)
                                                                                     ccccGAAGTTGCTGAGTTAAAAACCTCACCAGAAGAAAAAAAAAATAATTTGGCA‑GTCGCTTTTCTGACGAAAATTATTTACCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCgtcgtc                                                                                                                                                        <  2:646352/237‑1 (MQ=255)
                                                                                      aCCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTACTTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGAAATGCCTGCCACGATCCCCGGTACCGAAGCCTGGTTggcgcgccg                                                                                                                                                       >  2:1122907/1‑231 (MQ=255)
                                                                                      aCCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCt                                                                                                                                                       >  2:1091170/1‑239 (MQ=255)
                                                                                           tgTTGCTTATTTAAGATCTTCACCATAATCAAAAAAAAATAATCTGGCA‑GTCTGTTTTCTGAGGAAAATTATTTATCAGTGGATTTG‑TCTTATGTGCGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGttt                                                                                                                                                   <  1:273660/237‑1 (MQ=255)
                                                                                           atttggttaGTTAATAACTTCACCAGAAGCAATAAATAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGttt                                                                                                                                                   <  2:218410/230‑1 (MQ=255)
                                                                                           aGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGtct                                                                                                                                                   <  2:120577/238‑3 (MQ=255)
                                                                                              tggtGATTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTGCTGACGAAAATTATTTATAAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTa                                                                                                                                                <  2:515922/235‑1 (MQ=255)
                                                                                               gctggtttAATAACCTCACCAAAAGTAATAAAAAATGATCTGGCA‑GTCGGTTTTCTGAAAAAAATTATTTACCAGGTGATTTG‑TATTATGAACGCAGATGGTAAAAAAGATCCACAACGGAGGCAAATTGAAAAATTAATTGCCCCTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTCTTACg                                                                                                                                              <  1:749360/233‑1 (MQ=255)
                                                                                                               cACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGAc                                                                                                                               >  2:200115/1‑238 (MQ=255)
                                                                                                               cACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGCCTGTTTTTACGCTATACCGGCAAGAc                                                                                                                               >  2:868093/1‑238 (MQ=255)
                                                                                                               cACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTCTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGAc                                                                                                                               >  2:345056/1‑238 (MQ=255)
                                                                                                               cACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACACTGGAGCGTAGCTGATATGGCTCGCCCCATCCCCCATAACGAAGCCCGTTTGCTCGGGCAGTTTTTACCCTATACCGGCAAGagc                                                                                                                              >  1:780285/1‑237 (MQ=255)
                                                                                                               cACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCAAAACGGCGGCCAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACCACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGAGCAGCCTGGTTGCTGCGACTGTTTTTACGCTATACCGGCAAGAc                                                                                                                               >  2:45537/1‑238 (MQ=255)
                                                                                                                      aacAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGaa                                                                                                                         <  2:432665/235‑1 (MQ=255)
                                                                                                                      aGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCCAAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGa                                                                                                                          <  2:497452/236‑1 (MQ=255)
                                                                                                                      aGCAATAAAAAAGAATCTGGCA‑GTCGCTTTTCAGACCAAAATTATTTATCAGTGGATTTG‑GCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGa                                                                                                                          <  2:559818/236‑1 (MQ=255)
                                                                                                                          aTAAAAAATAATTTGGGA‑ATGTCTTTTGTAACGAAAATTTTTAATCAGTGGATTGG‑TCTTATGGACGGGGATGGTAAAAAAGATCCAAAACGGCCGCAAATTGAAAAATTAATTGCCCGTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAata                                                                                                                   <  1:406377/239‑1 (MQ=255)
                                                                                                                                     tCTGGCA‑TTCTCTTTTCTTACTAAAATTTTTTATCAGTGGTTTTG‑TTTTATGTACGGAGATGGTAAAAAAGTTCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATg                                                                                                        <  1:594881/239‑1 (MQ=255)
                                                                                                                                      ttgggtagtctgttttcttgaaaaaaTTTCTTATCAGTGGTTTTGTTTTTATG‑ACGCAGATGGTAAAAAAGTCCCCAAACGGCGGAAAATTGAAAAATTAATTGCCACTTGACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATg                                                                                                        <  1:49169/217‑1 (MQ=255)
                                                                                                                                          cA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGGCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCCCAATTcgcg                                                                                                    >  2:651910/1‑238 (MQ=255)
                                                                                                                                                       tgccaaaaaTTTTTTATCTGGGGTTTTT‑TTGTATGTAAGCAGGAGGAAAAAAAGAGCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACACGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTCTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGgcg                                                                                       <  1:1095874/234‑1 (MQ=255)
                                                                                                                                                       tGACGAAAATTATTTATCAGGGGATTTG‑TTTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGgcg                                                                                       <  2:162919/239‑1 (MQ=255)
                                                                                                                                                         aCGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAACGTAGCTGATATGGCTGCCACGATCCCCCGTAGCGAAGCCGGGTTGCGTCGTCTGTTTTTACCCTAAACCGCCAAGGCGCCCAAAGAATATTACCTCGATgtcggttgggctcgggcgcc                                                                                     >  1:657162/1‑220 (MQ=255)
                                                                                                                                                           aaaaaTTTTTTTTCAGGGGATTTT‑TCTTTGGTCCGCGGTTGCTAAAAAAGATCCCAAACGGCGGCAATTGGAAAAATTAATTGCCCCTTTACATGCCAGTCTGCAACAACGCTGGAGCTTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGGcgctat                                                                                   <  1:868093/238‑1 (MQ=255)
                                                                                                                                                           aaaaaTTTTTTATCAGTGGTTTTT‑TCTTAAGGACGGAATTGGTAAAAAAAATCCACAACGGCGGCAAATTGAAAAATTAATTGACTCTTTGCATGCCTGCCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGACACGATCCACTGTAGCGAAGCCTGGTTTCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGGcgctat                                                                                   <  1:362964/238‑1 (MQ=255)
                                                                                                                                                             aaaTTATTTACCAGGGGATTTG‑TTTTATGTACGAAGAGGGAAAAAAAGTACCACAAAGGCGGCAAATTGAAAAATTAATGGCCATTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCAAGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGGcgctat                                                                                   <  2:127013/237‑1 (MQ=255)
                                                                                                                                                                   tttttCAGTGGATTTG‑TTTTATGTACGCAGGTGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATGGCCATTTTCCATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGGCGCTATCGCTATTa                                                                           <  1:990454/239‑1 (MQ=255)
                                                                                                                                                                      atCAGTGGATTTG‑TCTTATGTAAGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCAACTTTAAATGCCAGTCTGCAGCAACGCTGGAGCGTAGCTGATATGGCTGCAACAGTCCCCCGTAGCGAAGCATGGTTGGGGAGGCTGTTTTTACGCTTGACCGGCACAAGCCCAGAAAAATTTTACCTCGATGCGCGACTGGAACTGGcgccatggccggaacct                                                                        >  1:1243588/1‑231 (MQ=255)
                                                                                                                                                                           tGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGGCGCTATCGCTATTAAAGcaaca                                                                   >  2:938467/1‑239 (MQ=255)
                                                                                                                                                                             gATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGGCGCTATCGCTCTTAAAGCAACAAg                                                                 >  2:830531/1‑239 (MQ=255)
                                                                                                                                                                                ttG‑TCTTATGTACGCAGAGGGTAAAAAAGGTCCACAACGGCGGCAAATTGAAAAATTAATTGCCCCTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGGCGCTATCGCTATTAAAGCAACAAGGa                                                               <  2:864299/238‑1 (MQ=255)
                                                                                                                                                                                      ttATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGCAGCCTGGTTGCGTCGTCGGTTTTTACGCTATACCGGAAAGACGCCGCAAGAATATTAACTCTATGCGCGTCTGGATCTGGCGCTAGCGCCATTAAAACAACAAGGAAACTCg                                                         >  1:939155/1‑239 (MQ=255)
                                                                                                                                                                                      ttATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGCCTGGGTCTGGCGCTATCGCTATTAAAGCAACAAGGAAACTCg                                                         >  2:60028/1‑239 (MQ=255)
                                                                                                                                                                                             cGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGGCGCTATCGCTATTAAAGCAACAAGGAAACCCGGTTGGCg                                                  >  2:30304/1‑239 (MQ=255)
                                                                                                                                                                                             cGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCCAAAGAATATTACCTCGAt                                                                                                         >  2:602327/1‑184 (MQ=255)
                                                                                                                                                                                              gCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGACTATTACCTCGATGCGCGCCTGGATCTGGCGCTATCGCTATTAAAGCAACAAGGAAACTCGGTTGGCGa                                                 >  2:368170/1‑239 (MQ=255)
                                                                                                                                                                                                 attGGTAAAAAAGATTCGTAACGGGGGGAAATGGAAAAATGAAGTGCCATGTTACAAGTCAGTCTGCAAGTACGGTGGAGCAGAGCCTATAGGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTTCTTCGTCTGTTTTTACGCTATACCGGGAAGATGCCGAATGAACTTTGCCTCGATGCGCGTCGGATTCTGGCGCTATCGTTATTAAAGCATCAAGGAAACTCGGGTGGCGAAGt                                              <  1:483525/237‑1 (MQ=255)
                                                                                                                                                                                                     gTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATTCGCGTCTGGATCTGGCGCTATCGCTATTAAAGCAACAAGGAAACTCGGTTGGCGAAGTCGCt                                          >  2:1294463/1‑239 (MQ=255)
                                                                                                                                                                                                              aTCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGGCGCTATCGCTATTAAAGCAACAAGGAAACTCGGTTGGCGAAGTCGCTGGTACGCTc                                 >  2:1008377/1‑239 (MQ=255)
                                                                                                                                                                                                               tCCAAAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGGCGCTATCGCTATTAAAGCAACAAGGAAACTCGGTTGGCGAAGTCGCTGATACGCt                                  <  2:238181/237‑1 (MQ=255)
                                                                                                                                                                                                                 cacaCCGGCGGCAAATGTAAAAATTAATTGCCTCTTACCCGGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCATGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGGCGCTATCGCTATTAAAGCAACAAGGAAACTCGGTTGGCGAAGTCGCTGATACGCTCAAc                              <  1:938467/239‑1 (MQ=255)
                                                                                                                                                                                                                 cacaACCGGTGCCAATTAAAAAATTTATGGCCCTTTGAAATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGGCGCTATCGCTATTAAAGCAACAAGGAAACTCGGTTGGCGAAGTCGCTGATACGCTCAAc                              <  1:1008377/239‑1 (MQ=255)
                                                                                                                                                                                                                 caaaaaggccgcAAATTGAAAAATTACTTGCCTCTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGGCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGGCGCTATCGCTATTAAAGCAACAAGGAAACTCGGTTGGCGAAGTCGCTGATACGCTCAAc                              <  2:2043/233‑1 (MQ=255)
                                                                                                                                                                                                                        gcggcAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGGCGCTATCGCTATTAAAGCAACAAGGAAACTCGGTTGGCGAAGTCCCTGAACCGCCCAACttcttc                        >  2:845652/1‑238 (MQ=255)
                                                                                                                                                                                                                         cggcAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGGCGCTATCCCTATTAAAGCAACAAGGAAACTCGGTTGGCGACGTCGCTGATACGCCCAACTTCTTCg                       >  2:988113/1‑238 (MQ=255)
                                                                                                                                                                                                                         ccgcAATTTTAAAAATTAATTTCCCTTTTACAGGCCAGTTGGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGGCGCTATCGCTATTAAAGCAACAAGGAAACTCGGTTGGCGAAGTCGCTGATACGCTCAACTTCTTCGa                      <  1:383976/237‑1 (MQ=255)
                                                                                                                                                                                                                           gaaaaTTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCta                                                                                                                                           <  1:1200529/118‑1 (MQ=255)
                                                                                                                                                                                                                                          aattGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGGCGCTATCGCTATTAAAGCAACAAGGAAACTCGGTTGGCGAAGTCGCTGATACGCTCAACTTCTTCGACTCCTTTCATTTCAGCa     <  2:1225760/239‑1 (MQ=255)
                                                                                                                                                                                                                                           attGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGGCGCTATCGCTATTAAAGCAACAAGGAAACTCGGTTGGCGAAGTCGCTGATACGCTCAACTTCTTCGACTCCTTTCATTTCAGCaa    <  2:912556/239‑1 (MQ=255)
                                                                                                                                                                                                                                           attGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGGCGCTATCGCTATTAAAGCAACAAGGAAACTCGGTTGGCGAAGTCGCTGATACGCTCAACTTCTTCGACTCCTTTCATTTCAGCaa    <  2:939155/239‑1 (MQ=255)
                                                                                                                                                                                                                                              gCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGGCGCTATCGCTATTAAAGCAACAAGGAAACTCGGTTGGCGAAGTCGCTGCTACGCTCAACTTCTTCGACTCCTTTCATTTCAGCAAAg  >  2:1269542/1‑238 (MQ=255)
                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                          
GGAATTTACCCCCACCAGTATGATGGATATTCCCGTTGGTCAGCAAAGCGTTATTTATAATGGCGAAATTTATAATC‑AGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCA‑GTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTG‑TCTTATGTACGCAGATGGTAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCTGATATGGCTGCCACGATCCCCTGTAGCGAAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTGGCGCTATCGCTATTAAAGCAACAAGGAAACTCGGTTGGCGAAGTCGCTGATACGCTCAACTTCTTCGACTCCTTTCATTTCAGCAAAG  >  NC_000913/3860617‑3861089

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A