Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F17 I0 R1
|
155 |
84.1 |
1797446 |
90.9% |
1633878 |
230.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,325,980 |
A→T |
16.7% |
Y412F (TAC→TTC) |
yciQ → |
enhancer of membrane protein expression, putative inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,325,980 | 0 | A | T | 16.7%
| 145.7
/ 2.3
| 71 | Y412F (TAC→TTC) | yciQ | enhancer of membrane protein expression, putative inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (13/43); new base T (10/3); total (23/48) |
| Fisher's exact test for biased strand distribution p-value = 4.87e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTGTTAATGAAGGCGCGACCAGAAATAATGCGGTATTACTGCCCGCAGAGCAGTTATTACTGGAAGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCTTGCGTTAATCGTGTAATCATCACTTTGTTTTTACCACTGATTTGTTCAGGCGTGGCCTTCTATTCTCTCTACATCAATGTCGGAGATGTATTCTTTTAC > NC_000913/1325743‑1326209
|
gttttAAGGAAGGCGCGACCAGAAATAATGCGGTATTACTGCCCTCAGAGCAGTTAGTACTGGAAGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTAc < 2:110949/236‑1 (MQ=255)
aGGTGCGACCAGAAATAATGCGGTATTACTGCCCGCAGAGCAGTTATTACTGGAAGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGa < 2:326261/239‑1 (MQ=255)
aGGCGCGAACAGAAATAATGCGGTATTACTGCCCGAAGAGCAGTTATTACTGGAAGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACtt < 2:895634/237‑1 (MQ=255)
aaaaaTAATGGGGTATTACTGCCCGCAGGGCAGTTATTACTGGAAGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAgg < 1:475154/237‑1 (MQ=255)
aataatGGGGTATTACTGCCCGCAGAGCAGTTATTACTGGAAGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCt < 2:169315/238‑1 (MQ=255)
aagtcGGTATTACTGCCCGCAGAGCAGTTAATACTGGAAGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGc < 2:535000/235‑1 (MQ=255)
tGCGGTATTACTGCCCGCAGAGCAGTTATTACTGGAAGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCCTTTTTTTCTGTTAATTTGGTTCTGTAgggttgggag > 1:130515/1‑231 (MQ=255)
tGCGGTATTACTGCCCGCAGAGCAGTTATTACTGGAAGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTTCGGTAACTTTAGTCCTGTAAGCTGGGCAg > 2:372410/1‑239 (MQ=255)
tGCGGTATTACTGCCCGCAGAGCAGTTATTACTGGAAGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTTAATTGAGGTCTGTatgggggggag > 1:223226/1‑229 (MQ=255)
gTATTACTGCCCGCAGGGCAGTTATTACTGGAAGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGaa < 2:223226/238‑1 (MQ=255)
gTATTACTGCCCGCAGAGCAGTTATTACTGGAAGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCCTTTTTTACGGTAACTTTGGTCCTGTGGGCTtggggggaga > 2:110503/1‑232 (MQ=255)
gTATTACTGCCCGCAGAGCAGTTATTACTGGAAGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTTTTTTCGGTAAATTTAGTCCGCTAGGCTGGGGAGGAAt > 2:469181/1‑239 (MQ=255)
gTATTACTGCCCGCAGAGCAGTTATTACTGGAAGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGGAACATGAGACCTTTAGGCCGGGCAGGAAt > 2:424254/1‑239 (MQ=255)
gTATTACTGCCCGCAGAGCAGTTATTACTGGAAGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGACTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGGCATTCTTTACGGTAAAttctttctcttatacccatctccgc > 2:65866/1‑215 (MQ=255)
tATTGCTGGACGCAGAGAAGTTATTACTGGAAGCGTTATTTCGGAAAGGCGATAAGGTCGTTCTTAAGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCCTTCTTTACGGTAACTTGAGTCCTGTAGGATGGGCAGGAAt < 2:285797/238‑1 (MQ=255)
ttACTGCCCGCAGAGCAGTTATTACTGGAAGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTTAGTCCTGTAGGCTGGGCAGGAATGAg > 2:414085/1‑239 (MQ=255)
cccgcaaggtcgTTATTACTGGAAGCTTTATTTCGGAAAGGCGGAAAGGGCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGTCATTGTTACTGATGAAGAAATTTTATCTGCCACGTAAAAAGTCGTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCTGTCATTCTTTACGGTAACTGGAGTCCTGTAGGCTGGGCAGGAATGAGTCtggt < 1:898217/228‑1 (MQ=255)
cAGAGCAGTTATTACTGGAAGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAATTTGAGGCCTTTTGGCTTGGCAGGAAAGGGTCTGTTGGGc > 2:333111/1‑239 (MQ=255)
gggctgTTTTTTCTGGAAGGGTTTTTTCGTTAAGGCGATAAGGTCGTTTTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATTCTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGa < 1:310835/234‑1 (MQ=255)
ggaGTTTTTACTGGAACGGTTTTTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGa < 1:469181/235‑1 (MQ=255)
gCAGTTATTACTGGAAGCGTTAATTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGa < 2:753133/237‑1 (MQ=255)
cAGTTATTACTGGAAGGGTTATTTCGTAAAGGCGATAAGGTCGGTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGTATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGata < 2:426214/238‑1 (MQ=255)
aGTTAATAATGGAATCGTTATGTCGGAAAGGCGATAAGGTCGTTCTTACGGGGAGACGGAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGatat < 2:279055/238‑1 (MQ=255)
ttattaCTGGAAGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGGCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGCCGGCTACTCTTTTTTGTTACTTGTGGCCCGTGAGCTGGGGCGGaaggggatcggtgggggggatgtt > 1:413676/1‑217 (MQ=255)
attaCTGGAAGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAAt < 2:364553/216‑1 (MQ=255)
ttaCTGGAAGGTTTATTTCGTAAAGGCGATAAGGTCTTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTttat < 1:414085/239‑1 (MQ=255)
tGGAAGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTAAGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATg < 2:743070/239‑1 (MQ=255)
aaGCGTTATTTCGTAAAGGCGTTAAGGTCCTTCTTACGGGGAGCCGCAACAGGGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGGGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGAt < 1:611679/238‑1 (MQ=255)
aaGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTTCGGTAACTTTGGTCCCGTGGGCTGGGGAGGAATGGGGCTGGTGGGCGGTATGTTTTTTTTGAtt > 2:481130/1‑238 (MQ=255)
aaGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTTTAGGCTTGGCAGGAAATGGTCTTGTggggggttagtttttttttttt > 2:780355/1‑220 (MQ=255)
gCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCCATCTTTTTGGTTAATTGGGGCCCGTTGGCGGGGGAGGGAAGGGTTTggggggggtgtctttaaaaaaaattgt > 1:364553/1‑218 (MQ=255)
ttagggCTATAAGGTCGTTTTTACGGGGAGCCGCACCAGATTTTTACGCAGGGTATTTTTACGGATGCGGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTTCCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTc < 1:774096/235‑1 (MQ=255)
aaaGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTc < 2:140047/238‑1 (MQ=255)
cGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCtttt < 2:793162/238‑1 (MQ=255)
cGTTCTTACGGGGAGACCCAACAGAGTCTTAAGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGtt < 1:118128/239‑1 (MQ=255)
gTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGGCATTCTTTATGGTAAATTGAGTCCTGTGGTCTGGGCGGGGGTGAGTGTTGTGGGGGGTATATTTTTTTTTTTCTTCTG‑GGTTTTTCCtttttttttttttt > 1:14169/1‑238 (MQ=255)
ttCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTTAGTCCTGTAGGCTGGGCCGGAATTGGTTTGGGTGGGGATATGTTTTTTTTGGTTTTGTG‑GGTTTTTCCTTTTTTTTTTTTTTc > 2:805379/1‑238 (MQ=255)
cggggGACGCAACTGATTCTTTCGCAGGGCTTTTTTACGGGTGCAGAAATTTTAGCAGCCGCGTAAAAAGTTTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGc < 1:333111/238‑1 (MQ=255)
agaCGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTTTTTACGGTAAATTTAGTCCTGTAGGGTTGGGCGGGATGAGGCTGGTGGGGGGGATGTTTTTTTTGTATTGCGT‑GGTTATTTCTTTTTTTTTTTTTTTCCtttgggtttt > 1:300537/1‑231 (MQ=255)
aCGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGCCATTCTTTTCGGTAACTTGAGTCCTGTTGGTTGGGCAGGGAATAGGCTTGTGGGGGGTATGTTTTTTTTGAACTGCCG‑GATTTTTCCTTTTTTTTTGTGTTTCCtttggacttttt > 2:154505/1‑229 (MQ=255)
accgattttttccccgggTATTTTTACGGAGGCAGAATTTTTATCTGCCGCGTAAAAAGTTTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGcc < 1:481130/224‑1 (MQ=255)
tCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGCCATTCTTTACGGGAACTTTGGTCCTGTAGGCTGGGCAGGGATTGGTCTGGGGGGCGGTATGTTTTTTTTGGTCTGCTG‑GATTTTTTCTTTTTTTTTTTTTTCCCTTTAGGTTTTGTTTGTCCCCgat > 2:612765/1‑239 (MQ=255)
tacgaggggCATTTTTACGGATGCAGAAATTTTAATTGCCGGGTAAAAAGTCTTCGGTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCgatgat < 2:705112/233‑1 (MQ=255)
tACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTTTTTTTGGTAACTTTGGTTCCGTAGGGCGGGCCGGGATGAGTCTGGTGGGCGGTCTGTTTATTTTGTTTGGCTG‑GGTTTTTCCTTTTTTTATTTTTTCCCTTTTAGTTTTGTTTGtcccggggggg > 1:423365/1‑231 (MQ=255)
ggCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCCTTTTTTTTGGTAACTTGGGTCCTGTTGGCTGGGCGGGGATGGGGCTGGGGGGCGGATTGTTTTTTTTTGTTTGGTG‑GGTTTTTCCTTTTTTTTTTTGTTTCCTTTTGCttttttttttcctcgcgtgtgtaaaa > 1:550196/1‑220 (MQ=255)
ggCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGGAAATTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTTCCTTTAGCTTTTGTTTGCCCCCGATGATGGCaaa > 2:15690/1‑237 (MQ=255)
ggCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGATTTACCGGTCTGATACTTTTTTGCAATGGGGGGGACTGGCAATAATGTCGGCTATTCTTTTCTGGTACTTGGGTCACGTTGGCTTGGGCGGGCTGGGTCTGGGTGGGGGGATGTTTTTTTTTATATCCTGTGTTTTTTCTCTTTTTTTTTTTTCCCCATGGGCTTTTGTTTTccccgcgttttgtcca > 1:738162/1‑225 (MQ=255)
gttttttttCGGATGGAGAATTTTTATCTGCGGTGTTAAAAGTTTTCGTTTTACCGGTTTGATTTTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGc < 1:424254/235‑1 (MQ=255)
gCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTGTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGc < 2:364897/238‑1 (MQ=255)
ttttttAGGGATGCAGAAGTTTTATCTGCCGCGTAAAAAGTTTTGGTTTTACAGGTCTGATTCTTTTTTGCAATGGGGTGGACGGGCAATTGTGGCGGTCATTCTTTACGGTAACTTGAGTACTGTATGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTGTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCt < 1:119589/237‑1 (MQ=255)
tcgtattaaGAAATTTTATTGGTCGGGTAAAAAGTTTTCGTTTTACCGGTCTGATGCTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCTTGCGTTa < 1:173307/231‑1 (MQ=255)
gacgAAATTTTTTCTGGCGGGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCTTGCGTTAATCgt < 1:8777/235‑1 (MQ=255)
agcTGCCGGGTAAAAAGGTTTCGTTTTACCGGTGTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCTTGCGTTAATCGTGTAATCATCACt < 2:748131/237‑1 (MQ=255)
aTCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCTTGCGTTAATCGTGTAATCATCACt < 2:413676/239‑1 (MQ=255)
tCTTCGTTTTACCGGTTTGATTCTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCTTGCGTTAATCGTGTAATCATCACTTTGTTTTTACCACTGAt < 2:529134/239‑1 (MQ=255)
cTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCTTGCGTTAATCGTGTAATCATCACTTTGTTTTTACCACTGAt < 2:274124/238‑1 (MQ=255)
ggTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCTTGCGTTAATCGTGTAATCATCACTTTGTTTTTACCACTGATTTGTTCAGGCGTg < 2:130515/239‑1 (MQ=255)
cttgttcTTTTTGGCAATGGGGTTGACTGGCAATTTTGGCGGTCCTTCTTTACGGTAACTTGAGTACTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTAGTATGATCTGCTT‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCTTGCGTTAATCGTGTAATCATCACTTTGTTTTTACCACTGATTTGTTCAGGCGTGGc < 2:632583/232‑1 (MQ=255)
ttttGCAATGGGGTGGACTGGTAATATTGGGGGTCATTCTTTGCGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCTTGCGTTAATCGTGTAATCATCACTTTGTTTTTACCACTGATTTGTTCAGGCGTGGCCTTCTATtct < 1:540469/239‑1 (MQ=255)
ttGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTCACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTTGTGGGCGATCTGTTTATTATGATCTGGTG‑GGTTATTCCTTTTTTTTTTTTTTTCCCTTAGCTTTTTTTTGTCCCCGGTGATTACAAGCCTTTGGTTTATCCTGTTTTTATTCCTTTTTTTTTTCCACAGTTTTTTTTAGGCGGGGGCttttttttcc > 1:868295/1‑230 (MQ=255)
ggggTGGACTGGAAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCTTGCGTTAATCGTGTAATCATCACTTTGTTTTTACCACTGATTTGTTCAGGCGTGGCCTTCTATTCTCTCTACATc < 2:14169/239‑1 (MQ=255)
cTGGAAATTTTGGGGGTTATTCTTTTCGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTTTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCTTGCGTTAATCGTGTAATCATCACTTTGTTTTTACCACTGATTTGTTCAGGCGTGGCCTTCTATTCTCTCTACATCAATGTCg < 1:35320/238‑1 (MQ=255)
tGGGAATTTTGGCGGTCAATCTTTACGGTAACTTGAGTCCTGTAGGGTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCTTGCGTTAATCGTGTAATCATCACTTTGTTTTTACCACTGATTTGTTCAGGCGTGGCCTTCTATTCTCTCTACATCAATGTCgg < 2:423365/238‑1 (MQ=255)
aaTTTTGGGGTTTATTTTTTTCGGTAATTTGAGGCCTTTAGGGTGGGCAGGAATGGGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCTTGCGTTAATCGTGTAATCATCACTTTGTTTTTACCACTGATTTGTTCAGGCGTGGCCTTCTATTCTCTCTACATCAATGTCGGAGATg < 1:780355/239‑1 (MQ=255)
atatTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCTTGCGTTAATCGTGTAATCATCACTTTGTTTTTACCACTGATTTGTTCAGGCGTGGCCTTCTATTCTCTCTACATCAATGTCGGAGATg < 2:868295/238‑1 (MQ=255)
ttttgCGGTCTTTTTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCTTGCGTTAATCGTGTAATCATCACTTTGTTTTTACCACTGATTTGTTCAGGCGTGGCCTTCTATTCTCTCTACATCAATGTCGGAGATGTAt < 1:372410/235‑1 (MQ=255)
atTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCTTGCGTTAATCGTGTAATCATCACTTTGTTTTTACCACTGATTTGTTCAGGCGTGGCCTTCTATTCTCTCTACATCAATGTCGGAGATGTAt < 2:738162/239‑1 (MQ=255)
gttaTTTTTTTCGTTAACTTGTTTCCTGTAGGCTGGGCAGGAATGATTCTGGTGGGCGATATGTTTATTATGATCTTCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCTTGCGTTAATCGTGTAATCATCACTTTGTTTTTACCACTGATTTGTTCAGGCGTGGCCTTCTATTCTCTCTACATCAATGTCGGAGATGTATTCtttt < 1:805379/235‑1 (MQ=255)
tCATTGTTTACGGTAACGTTAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCTTGCGTTAATCGTGTAATCATCACTTTGTTTTTACCACTGATTTGTTCAGGCGTGGCCTTCTATTCTCTCTACATCAATGTCGGAGATGTATTCTTTTa < 2:216897/238‑1 (MQ=255)
taTTGTTTGCGGTAACTTGAGTCCTGTAGGCTGGGCATGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCTTGCGTTAATCGTGTAATCATCACTTTGTTTTTACCACTGATTTGTTCAGGCGTGGCCTTCTATTCTCTCTACATCAATGTCGGAGATGTATTCTTTTAc < 2:468653/237‑1 (MQ=255)
cATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCTTGCGTTAATCGTGTAATCATCACTTTGTTTTTACCACTGATTTGTTCAGGCGTGGCCTTCTATTCTCTCTACATCAATGTCGGAGATGTATTCTTTTAc < 2:300537/238‑1 (MQ=255)
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GTGTTAATGAAGGCGCGACCAGAAATAATGCGGTATTACTGCCCGCAGAGCAGTTATTACTGGAAGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTACGCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTCGTTTTACCGGTCTGATACTTTTTTGCAATGGGGTGGACTGGCAATATTGGCGGTCATTCTTTACGGTAACTTGAGTCCTGTAGGCTGGGCAGGAATGAGTCTGGTGGGCGATATGTTTATTATGATCTGCTG‑GATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACAAGCCTTGCGTTAATCGTGTAATCATCACTTTGTTTTTACCACTGATTTGTTCAGGCGTGGCCTTCTATTCTCTCTACATCAATGTCGGAGATGTATTCTTTTAC > NC_000913/1325743‑1326209
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
