Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F17 I0 R1
|
155 |
84.1 |
1797446 |
90.9% |
1633878 |
230.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,383,720 |
G→A |
15.4% |
S81F (TCT→TTT) |
ycjW ← |
LacI family putative transcriptional repressor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,383,720 | 0 | G | A | 15.4%
| 129.4
/ 2.1
| 66 | S81F (TCT→TTT) | ycjW | LacI family putative transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base G (43/11); new base A (3/8); total (47/19) |
| Fisher's exact test for biased strand distribution p-value = 1.39e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GGCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACAC‑TTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTA > NC_000913/1383488‑1383953
|
ggCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCCTTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCCGCTTTGGCGGTGATTGCA‑TGCAAAACTT‑CAG‑Gaaaaa > 1:615087/1‑239 (MQ=255)
ggCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTTTAATATACCGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGTTGGCA‑AGCAAAACTT‑CAG‑Gaaaaa > 1:779213/1‑239 (MQ=255)
ggCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGaaaa < 2:109612/239‑1 (MQ=255)
ggCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAAGGaaaa > 2:101414/1‑239 (MQ=255)
ggCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATG‑CTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGaaaaa > 2:576300/1‑239 (MQ=255)
gtaatttggcgcgcAAATTTGGCAAACCCCCACACCGTAAAAACATATTTAACGGGTTGGTGAAAAAATG‑ACTCACCCGGTCGCGAA‑CTGAGCAAAATAATGCCGTTAATCATTGTCTGCTTGATTTTGCTTTCGCATTATTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAAGATCACGTCGAAACCTTTTCCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGaaat < 1:876428/225‑2 (MQ=255)
cTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGGGGTGTTGGCA‑TGCAAAACTT‑CCGTGAAAAACGG‑ATTAcc > 2:860136/1‑238 (MQ=255)
cTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGCGAAAAACGG‑ATTAcc > 2:75375/1‑238 (MQ=255)
cTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑CTTAccc > 2:895305/1‑239 (MQ=255)
cTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATA‑ACACATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATAATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTTTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGGTGGCA‑TGCAAAAATT‑CAGGAAAAAACGG‑ATAAcc > 1:580351/1‑238 (MQ=255)
cAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGTTGGCA‑TCCAAAACTT‑CAGAGAAAAACGG‑ATTAcccccc > 2:36968/1‑239 (MQ=255)
aaCTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTTTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGTTGGCA‑TGCAAAACTT‑CAGAGAAAAAAAG‑ATTACccgccg > 1:691890/1‑239 (MQ=255)
ttGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCCAAACTT‑CAGGGAAAAACGG‑ATTACCCGCCGTAGt > 2:641509/1‑239 (MQ=255)
tGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGGGGTGGCA‑TGCAAAACTT‑TCAAAAAAAACGG‑GTTACCCGCCGGAGtt > 1:678136/1‑239 (MQ=255)
gCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑ATCAAAACTT‑TAGAGAAAAACGG‑TTTACCCCCCGCAGttt > 1:80512/1‑239 (MQ=255)
ccaccGGAATATCATTTTTAACGAGTTGGGAAAAAAATG‑CCTCACCCGCTGGCGAC‑CTGAGCATATTAATGCTTTTAATCATTTTCTGTTTAATTTTGCTTCCGCATTTTGGCAGATTTTCGGCCGGATTGGGGGACGTTTTTAATATCACGTCGAACCCTTCTTCTTCAGCTTTGGCGGTGATGGAA‑GGAAAAACTT‑AAGAAAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑gg < 2:863133/239‑1 (MQ=255)
gAATATCATATTTATCGAGTTGGGCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGTAGTTTTGTTCGAAC‑GGGCAGaa > 2:43203/1‑239 (MQ=255)
gAATATAATATTTATCGAGTTGGGCAAAAAATG‑ACTCATCCGCTGGCGCA‑CTGAGCATAATAATGCCTTTAATCATTTTCAGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTACTATCCAGTCGAAAACTTCTTCTTCAGCTTTGTCGGTCA‑GGCACTTCAAAATCT‑CGTGGCAAAACGG‑ACTACACCCCGTAGTTTTGGTGGacacggcagaa > 1:289040/1‑229 (MQ=255)
atattatttttttgggTTTGGAAAAAAATGCACTC‑TCCCGTGGGGAACCTGGGCATAAAAATCCTTTTAATTTTTTTCTTTTTATTTTTTCTTTCGCTTTTTTGCAGATCTTCTGCGGGTTTGTGGGCTGTTGGTAATATCACGTCGAACCCTTCTTCTTCAGCTTGGGCGGTGATGGCA‑TGCAAAACTT‑CAAAAAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAAt < 1:101414/224‑1 (MQ=255)
tCATATTTATCGAGTTGGGCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATTACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑TTTAACCGCCGGAGTTTTGGTAGAAA‑GGGGACAAATCAc > 1:626806/1‑239 (MQ=255)
tCATATTTATCGAGTTGGGCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTGGAAATcc > 2:895955/1‑237 (MQ=255)
tatTCATCGAGTTGGGCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGGAGTTTTGGTCGAAC‑GGGTAGaaacaggc > 2:594041/1‑232 (MQ=255)
ttATCGAGTTGGGCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTACTTAATTTTGCTTTCGAATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATAACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGTTGGCA‑TGCAAACTTT‑CAGAGGAAAACGG‑ATACACCACCGTTGTTTTGGGGGAAA‑GGGGAAAAAACaaccaaaa > 1:320842/1‑232 (MQ=255)
aTCGAGTTGGGCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGGGATGGCA‑TGCAAAACTT‑CAAAGAAAAACGG‑ATTACCCGCCGCAGTTTTGGTCGAAA‑GGGTAAAAAacacaaaaaaag > 1:208990/1‑231 (MQ=255)
ttGGGCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATAACCATAATGGCATCaa > 2:650533/1‑239 (MQ=255)
ggCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGGGAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCaaaa > 2:758791/1‑238 (MQ=255)
aCTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGCAGAGGTc > 2:67328/1‑239 (MQ=255)
aCTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCCCCGTAGTTTTGTTCGAAC‑GGGTAAAAATCACCCTAATGGCAACAAAACCCCAAAAggga > 1:784748/1‑237 (MQ=255)
aTCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGCTTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAACATT‑CAGAGAAAAACGG‑ATTACCCTCCCGAGTTTTGGTCGACC‑GGGTGGCAATAACCATAAATGCACAAAAACCCaaaagggaaaaca > 1:491077/1‑229 (MQ=255)
gAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGACCGGGGTAGAAAT‑ACCAAAATGGCCTCAAAACCCCAAAAGGCCAACGC‑G‑GGGGCCAg > 1:741725/1‑239 (MQ=255)
tGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGCTGGCA‑TGCAAAACTT‑CAGAGAAAAACCG‑ATTACCCGCCGGCGTTTTGGTCGAAC‑CGGTAGAAATCAACACAATGGCTCCAAAAACCCAAGAGGTACGCGG‑G‑GGGGCAACCTTGGTTAGCTgcaca > 1:30213/1‑235 (MQ=255)
tGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGTGGGTTTTGTCGAAC‑GGGTAGAAATCACCCTAATGGCATCAAAAACCGAAGAGGGCGCGGG‑G‑CGGGCCAGCGTGTTGGGCGGATaa > 1:755104/1‑238 (MQ=255)
tGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCCTAAAGGCATCAAAACCCGAAGAGGCAAAGGC‑G‑CGGGACAACTTGTTTGGCTGAAAc > 1:463026/1‑239 (MQ=255)
tGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAAAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTgct > 2:294638/1‑235 (MQ=255)
tGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAAAGGTCAG‑GC‑GACAGAGCACCTTCTTTGGCTGATAc > 2:826559/1‑239 (MQ=255)
cttttAAACTTTTCTTGTTTATTTTTTGTTTCGTTTTTTTGAAGTTTTTCTGCGGGTTTGTGCGTCTTTTTAAAAATCACGGCGAAACCTTCTTCTTCAGTTTTGGCGGTAATGGCA‑TGAAAAACTT‑AAAAAAAAAACGG‑ATTCCCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATACTg < 2:691890/237‑1 (MQ=255)
ccTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCCTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAACAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGTTACTg > 2:69128/1‑239 (MQ=255)
ttAATTATTCTGTGGTAAATTTTTCTTTCGCTTTTTTGCAGATTTTCTGCGGGTTTGGGCAACTTTTTAAATACCACGTCAAACCCTTCTTCTTCAGCTTGGGGGGTGATGGAA‑GGCAAACCTT‑AAGAGAAAAACGG‑ATTCCCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATACTGTaa < 2:741725/239‑1 (MQ=255)
ttAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTAAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGAAAcaggaa > 1:68303/1‑234 (MQ=255)
aaTCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGC‑C‑CGGGCCAGCTTGTTTGGCTGTAACAGTAAtt > 2:319407/1‑239 (MQ=255)
ttttCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACATCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATAACCATAATGGCATCAAAACCCGAAGAGGCCAGCGG‑G‑CGGGCCAGCTTGTTTGGCTGAAACTTGAATTTTTCa > 1:326086/1‑239 (MQ=255)
cTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCCGAGTTTTGGTCGAAC‑GGTGAGAAATCACCACAATGGCCTCAAAACCCCAAAAGGTCA‑CGCAC‑CGGGCCCACTGTGTTGGCTGGAACTGAAATTCTTACATGGccc > 1:409180/1‑239 (MQ=255)
tAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATACTTTAATTCTTCAATTGCCCgg > 2:153124/1‑238 (MQ=255)
tCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCACAACCCGAAGAGGTCAGCGG‑C‑CGGGCCCGCTTGTTTGGTGGATACTGTAATTCTTCAATGGCCCGGAAAAC‑tttttt > 1:664902/1‑238 (MQ=255)
aTTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑CTTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGCAAAGGGCAGAGC‑G‑CGGGCCCGCTTGTTTGGGTGATACTGTAATTTTTCAATGGCCCGGAACAC‑ATTTTCCCGCGCTTCCGGGGAGGTATTAAttt > 1:642940/1‑239 (MQ=255)
tgCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGCAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTACCAC‑TTTTTCGCGCGCTTCCGGGGAGGTATTAGTTTGCtt > 2:8559/1‑239 (MQ=255)
gCGACGTTTGTAATATCGCGGCAAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAACCTG‑CAGAAAAAAACGG‑TTTCCCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACAC‑TTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTa < 2:678136/239‑1 (MQ=255)
tggtaaacacACGGCAAACCCTTTTTCTACGGCTTGGGGGGGGTTGGAA‑TGAAAAACTA‑AAGAGAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACAC‑TTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGc < 2:784748/229‑1 (MQ=255)
tCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGt > 2:39231/1‑130 (MQ=255)
cGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCaa > 2:686554/1‑171 (MQ=255)
cGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACAC‑TTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGGGATACg > 2:815219/1‑239 (MQ=255)
cGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGGAACACTTTTTTTGCGC‑CTTCCGGGGGGATATTAATTTGGTTTTTCAGCAcgcgggcaagg > 1:80482/1‑232 (MQ=255)
cGAACCTTTCTTCTCCTCTTTGGGGGGTGATGGCA‑‑GCAAAAATTGAAAAGAAAGACGG‑ATTCCCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACAC‑TTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGt < 2:615087/238‑1 (MQ=255)
ttctccAGCTTGGGGGTTGAGGGTA‑TCAAAACCTA‑CAGAGAAAACCGT‑ATGACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGC‑G‑CGGGCCAGCTTGGTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACCC‑TTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATa < 2:715918/239‑1 (MQ=255)
aGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCCCCGTAGTTTTGGTCGAAC‑CGGTTGAAATCACCATAATGGCATCAAAACCCGCAGAGGTCACCGC‑G‑CGGGCCAGCTTGTTTGGCTGGTACTGTAATTCTTCAATGGCCCCGACAAC‑TTTTTCGCGGGCTCCCGGGGGGGTATTAAGTTGCTTATTCAGCACGCTGGAAACCGTGGTTTTTGGTAAGCCt > 1:197398/1‑238 (MQ=255)
gCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTACCAC‑CTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGGGATACGGGGGATTTTGGTACGCCTGc > 1:213304/1‑239 (MQ=255)
tgggggggaggtcA‑TGCAAAACTG‑CAAAAAAAAACGG‑ATTCCCCGCCGTAGGTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAACCCCGAAGAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACTC‑TTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAAcc < 2:352831/227‑1 (MQ=255)
gTGATGGCA‑TGAAAAACTT‑CAGAAAAAAGCGG‑TTTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACAC‑TTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTgg < 2:326086/238‑1 (MQ=255)
gagggaa‑TGAAAAACTT‑AAGAAAAAAACGG‑ATTCCCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACAC‑TTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa < 2:554025/232‑1 (MQ=255)
gATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGC‑G‑CGGGCCCGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACAC‑TTTTTTGCGCGCTTCCGGGGGGGTTTTAGTTTGCTTATTCCGACCGCGTGATACGGGGGATTTTGATAACCCTGCAACCCTGGCaa > 1:554025/1‑239 (MQ=255)
gtggccaagaaaaaCTT‑CAGAAAAAACTGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACAC‑TTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa < 2:580351/228‑1 (MQ=255)
ggggaaattgaaaaCTG‑AAAAGAAAAACGG‑TTGCCCCGCCGGAGGTTTGGTCGGAC‑GGGTCAAAATACCCATAATGGAATCAAACCCCGAAGAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACAC‑TTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa < 1:100592/228‑1 (MQ=255)
gatggaaggaaaatcgttagaaAAACACGG‑TGTACCCGCCTTAGTTTTGGCCGATC‑GGGTAGAAATCACCCTAATGGCATCAAAACCCGAGGAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACAC‑TTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa < 2:409180/220‑1 (MQ=255)
gatggaagaaaaaCTT‑AAAAAAAAAAGGGTATTCCCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACAC‑TTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa < 2:68303/229‑1 (MQ=255)
aataaaaaaCTT‑CAAAAAAAAACGA‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACAC‑TTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATc < 2:80512/233‑1 (MQ=255)
acaaaatcgcAGAAAAACACGG‑ATCTCCCGCCTTAGTTTTGGGCGAAC‑GGGTAGGAAGCCACATAATGGCCTCAAAACCCGAAGATGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATTCTGTAATTTTTCAATGGCCCGTAACAC‑TTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATa < 2:851291/229‑1 (MQ=255)
ttt‑CAAAAAAAAAGGG‑ATTACCCGCCGTAGTTTTGGTGGAAC‑GGGTAGAAATCGCCATAATGGCATCAAAACCCGAAGAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACAC‑TTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAAtagta < 1:576300/238‑1 (MQ=255)
|
GGCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATG‑ACTCATCCGCTGGCGAA‑CTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCA‑TGCAAAACTT‑CAGAGAAAAACGG‑ATTACCCGCCGTAGTTTTGGTCGAAC‑GGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGC‑G‑CGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACAC‑TTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTA > NC_000913/1383488‑1383953
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
